8cae0f94eb
The nomic-embed-text space over the corpus is strongly anisotropic (mean pairwise cosine ~0.55), which compresses cosine-based domain separation almost to nothing so the design-doc s5 operators (distance/overlap/Wasserstein) cannot discriminate. Subtracting the global mean of the normalized embeddings restores isotropy (mean pairwise cosine ~0) and sharpens the operators. - add GeoMeanCache (engram_geo_mean_build / _maybe_refresh / _vec / _free): a store-derived centering offset over the embed-eligible set, cached and refreshed on significant drift; lives in geometry.c, not the store. - engram_geometry_descriptor gains an optional global_mean: when supplied the centroid, per-member cosine distance, and co-registration run in centered space (GM=zeros reproduces the legacy raw path exactly). - co-registration choice (b): the ANN query stays in raw unit space (index unchanged) since centering is a rigid translation that ~preserves neighborhood membership; only the descriptor statistics move to the centered frame. Covariance/axes/radius are translation-invariant and therefore unchanged. - test: synthetic ground-truth suite stays green (PERF + ASan/UBSan), plus new centered/raw/mean-cache assertions. - add bench_discrimination.c (env-gated, read-only, skips in CI): on a copy of the real store the two-domain overlap operator drops 1.13 -> 0.008 and cross-centroid cosine 0.899 -> 0.003 after centering, Euclid distance unchanged (translation-invariant control). No change to activation/retrieval behavior; wiring geometry into retrieval is a separate, behavior-changing cutover.
150 lines
7.4 KiB
C
150 lines
7.4 KiB
C
/* bench_discrimination.c — M9 REFINEMENT bench: measures whether mean-centering
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* the anisotropic nomic-embed-text space sharpens the §5 geometry operators on
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* REAL data. Read-only over a COPY of the live store (never the live file).
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*
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* usage: bench_discrimination [store.egm]
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* (or set ENGRAM_BENCH_STORE). If no store is given/openable it prints
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* SKIP and exits 0 — so it is safe in CI without live data.
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*
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* It picks two semantically distinct cohorts by keyword (domain A vs domain B),
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* computes the global mean over the embed-eligible set (via engram_geo_mean_build
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* — the same offset the descriptor uses), then reports BEFORE (raw unit space)
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* vs AFTER (mean-centered space):
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* - cross-centroid cosine (lower = better separated)
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* - cross-centroid Euclid dist (translation-invariant: a control)
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* - intra-cohesion per domain (member cos to own centroid)
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* - overlap operator (cross_cos / sqrt(intraA*intraB): ~1 = domains
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* indistinguishable, ~0 = cleanly separated)
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* - angular separation ratio z (centroid angle / summed angular spread)
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* - mean pairwise cosine sample (the anisotropy headline; ~0.55 raw -> ~0 ctr)
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*
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* Pure C11; links engram_store.c + engram_geometry.c; -lm.
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*/
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#include "engram_store.h"
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#include "engram_geometry.h"
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#include <stdio.h>
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#include <stdlib.h>
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#include <string.h>
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#include <strings.h>
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#include <math.h>
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#define CAP_DOMAIN 400
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#define CAP_SAMPLE 800
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typedef struct { float** v; int n, cap, dim; } VecSet;
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static void vs_init(VecSet* s){ s->v=NULL; s->n=0; s->cap=0; s->dim=0; }
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static void vs_push(VecSet* s, const float* e, int dim, int cap){
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if(s->n>=cap) return;
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if(s->dim==0) s->dim=dim;
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if(s->n==s->cap){ int nc=s->cap?s->cap*2:64; s->v=realloc(s->v,(size_t)nc*sizeof*s->v); s->cap=nc; }
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float* c=malloc((size_t)dim*sizeof(float));
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double nn=0; for(int d=0;d<dim;d++) nn+=(double)e[d]*e[d]; nn=sqrt(nn);
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if(nn<1e-12){ free(c); return; }
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for(int d=0;d<dim;d++) c[d]=(float)(e[d]/nn); /* L2-normalized copy */
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s->v[s->n++]=c;
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}
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static void vs_free(VecSet* s){ for(int i=0;i<s->n;i++) free(s->v[i]); free(s->v); }
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typedef struct { VecSet A, B, S; long idx; } Coh;
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static int has(const char* h, const char* n){ return h && strcasestr(h,n)!=NULL; }
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static void cb(const StoreNode* n, void* ctx){
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Coh* c=ctx;
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if(!(n->emb && n->emb_dim>0)) return;
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/* every 5th embedded node -> isotropy sample */
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if((c->idx++ % 5)==0) vs_push(&c->S, n->emb, n->emb_dim, CAP_SAMPLE);
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const char* t=n->content; const char* g=n->tags;
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int A = has(t,"quantiz")||has(g,"quantiz")||has(t,"lorablation")||has(t,"70B")||has(t,"LoRA merge");
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int B = has(t,"kubernetes")||has(t,"terraform")||has(t,"argo")||has(g,"infrastructure")||has(t,"vault")||has(t,"cloudflare");
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if(A && !B) vs_push(&c->A, n->emb, n->emb_dim, CAP_DOMAIN);
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else if(B && !A) vs_push(&c->B, n->emb, n->emb_dim, CAP_DOMAIN);
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}
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/* mean of a VecSet into out (dim doubles). */
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static void mean_of(const VecSet* s, const float* gm, double* out){
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int dim=s->dim; for(int d=0;d<dim;d++) out[d]=0;
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for(int i=0;i<s->n;i++) for(int d=0;d<dim;d++) out[d]+=(double)s->v[i][d]-(gm?gm[d]:0.0);
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if(s->n) for(int d=0;d<dim;d++) out[d]/=s->n;
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}
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static double dnorm(const double* a, int dim){ double s=0; for(int d=0;d<dim;d++) s+=a[d]*a[d]; return sqrt(s); }
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static double dcos(const double* a, const double* b, int dim){
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double na=dnorm(a,dim), nb=dnorm(b,dim); if(na<1e-12||nb<1e-12) return 0;
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double s=0; for(int d=0;d<dim;d++) s+=a[d]*b[d]; double c=s/(na*nb);
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if(c>1)c=1; if(c<-1)c=-1; return c;
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}
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static double deuclid(const double* a, const double* b, int dim){
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double s=0; for(int d=0;d<dim;d++){ double x=a[d]-b[d]; s+=x*x; } return sqrt(s);
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}
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/* mean cosine of members (minus gm) to centroid c (already gm-subtracted). */
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static double cohesion(const VecSet* s, const float* gm, const double* c){
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int dim=s->dim; double nc=dnorm(c,dim); if(nc<1e-12||s->n==0) return 0;
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double acc=0; for(int i=0;i<s->n;i++){
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double dot=0, nv=0;
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for(int d=0;d<dim;d++){ double v=(double)s->v[i][d]-(gm?gm[d]:0.0); dot+=v*c[d]; nv+=v*v; }
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nv=sqrt(nv); if(nv<1e-12) continue; double cc=dot/(nv*nc);
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if(cc>1)cc=1; if(cc<-1)cc=-1; acc+=cc;
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}
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return acc/s->n;
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}
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/* mean pairwise cosine over a sample (isotropy metric). */
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static double mean_pairwise_cos(const VecSet* s, const float* gm){
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int dim=s->dim; if(s->n<2) return 0; double acc=0; long np=0;
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for(int i=0;i<s->n;i++) for(int j=i+1;j<s->n;j++){
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double dot=0, na=0, nb=0;
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for(int d=0;d<dim;d++){ double a=(double)s->v[i][d]-(gm?gm[d]:0.0), b=(double)s->v[j][d]-(gm?gm[d]:0.0);
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dot+=a*b; na+=a*a; nb+=b*b; }
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na=sqrt(na); nb=sqrt(nb); if(na<1e-12||nb<1e-12) continue;
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double c=dot/(na*nb); if(c>1)c=1; if(c<-1)c=-1; acc+=c; np++;
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}
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return np? acc/np : 0;
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}
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static void report(const char* label, Coh* c, const float* gm){
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int dim=c->A.dim; double* ca=malloc((size_t)dim*sizeof(double)); double* cb=malloc((size_t)dim*sizeof(double));
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mean_of(&c->A, gm, ca); mean_of(&c->B, gm, cb);
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double xcos=dcos(ca,cb,dim), xeuc=deuclid(ca,cb,dim);
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double cohA=cohesion(&c->A,gm,ca), cohB=cohesion(&c->B,gm,cb);
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double overlap = (cohA>0&&cohB>0)? xcos/sqrt(cohA*cohB) : xcos;
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double theta = acos(xcos<-1?-1:(xcos>1?1:xcos));
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double sig = acos(cohA<-1?-1:(cohA>1?1:cohA)) + acos(cohB<-1?-1:(cohB>1?1:cohB));
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double z = (sig>1e-9)? theta/sig : 0;
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double mpc = mean_pairwise_cos(&c->S, gm);
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printf(" [%s]\n", label);
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printf(" cross-centroid cosine = %+.4f (lower = better separated)\n", xcos);
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printf(" cross-centroid Euclid = %.4f (translation-invariant control)\n", xeuc);
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printf(" intra-cohesion A / B = %.4f / %.4f\n", cohA, cohB);
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printf(" OVERLAP operator = %.4f (~1 = indistinguishable, ~0 = clean)\n", overlap);
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printf(" angular separation z = %.3f (centroid-angle / summed spread; >1 = separated)\n", z);
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printf(" mean pairwise cosine = %+.4f (isotropy: ~0.55 anisotropic -> ~0 isotropic)\n", mpc);
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free(ca); free(cb);
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}
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int main(int argc, char** argv){
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const char* path = (argc>1)? argv[1] : getenv("ENGRAM_BENCH_STORE");
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if(!path){ printf("SKIP: no store path (arg or ENGRAM_BENCH_STORE)\n"); return 0; }
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EngramPagedStore* st=store_open(path);
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if(!st){ printf("SKIP: could not open %s\n", path); return 0; }
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Coh c; vs_init(&c.A); vs_init(&c.B); vs_init(&c.S); c.idx=0;
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store_scan_nodes(st, cb, &c);
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printf("=== two-domain discrimination bench (real store copy) ===\n");
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printf("domain A (quantization) n=%d ; domain B (infrastructure) n=%d ; sample n=%d ; dim=%d\n",
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c.A.n, c.B.n, c.S.n, c.A.dim);
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if(c.A.n<3 || c.B.n<3){ printf("SKIP: a cohort is too small to be meaningful\n");
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vs_free(&c.A); vs_free(&c.B); vs_free(&c.S); store_close(st); return 0; }
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GeoMeanCache* mc=engram_geo_mean_build(st);
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const float* gm=engram_geo_mean_vec(mc);
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printf("global-mean cache: dim=%d over %llu embedded nodes\n\n",
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engram_geo_mean_dim(mc), (unsigned long long)engram_geo_mean_count(mc));
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printf("BEFORE (raw anisotropic unit space):\n");
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report("RAW", &c, NULL);
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printf("\nAFTER (mean-centered isotropic space):\n");
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report("CENTERED", &c, gm);
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engram_geo_mean_free(mc);
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vs_free(&c.A); vs_free(&c.B); vs_free(&c.S);
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store_close(st);
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return 0;
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}
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