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el/ingest/src/ingest.el
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bigmerge e29fe4fd0b
El SDK CI - dev / build-and-test (pull_request) Failing after 3m42s
ingest: unify transduce_prose/transduce_structured into one transduce()
transduce() is now THE single mechanism: one function, no content-type
branch inside it. It never asks whether `source` is prose, JSON, or
raw/opaque bytes (audio, etc.) — it runs one algorithm unconditionally:
split on "\n\n" as a universal boundary-marker check, and if that finds
no boundary, fall back to fixed 4096-char windows. Same node/edge wiring
(root -contains-> chunk, chunk -precedes-> next, "#"-prefixed chunk gets
a heading/section_of link) regardless of what's inside a chunk. Dedup is
the existing find_existing_by_content path via merge_manifold, applied
uniformly. The old transduce_structured JSON dataset/records/feature-node
interpretation is deleted outright, not just unused — a JSON file now
gets chunked and deduped like anything else, with no pre-computed
structure. All five ingest_* entry points still exist unchanged in name
and role; ingest_file/ingest_dir/ingest_url/ingest_llm now call the one
transduce() (ingest_stream builds its own turn-nodes directly and never
called either old function, so it's untouched).

This unlocks raw/opaque content (audio, or anything else with no natural
text/JSON shape) without any DSP, LLM call, or external API: transduce()
chunks it exactly like it chunks anything else. There is zero semantic
understanding of audio (or any payload) claimed or built here — any
meaning is expected to emerge later from Neuron's own existing mechanisms
(embedding, spreading activation, dedup) acting on this real geometry
over time.

Two small C builtins added to el_runtime.c/h (fs_size, fs_read_b64_chunk)
because El strings are NUL-unsafe under strlen-based ops and fs_read()'s
result silently truncates at the first embedded NUL, which is routine in
real binary/audio bytes. ingest_file compares fs_read()'s string length
against a real fs_size() stat() count; on mismatch it rebuilds the
payload as base64-encoded fixed 3072-byte windows read directly off disk
(binary-safe in C, verbatim, no invention), joined with the same "\n\n"
marker transduce()'s boundary scan already looks for. This is a
mechanical fidelity fix, not interpretation of content — transduce()
never learns a fallback happened. Registered both builtins' arity in
codegen.el; did not rebuild the elc compiler binary itself (unrelated,
pre-existing gap: self-hosting elc via el_seed.c fails on this worktree
independent of this change, reproduced with codegen.el reverted) — the
existing elc binary compiles calls to unregistered builtins via its
already-existing arity=-1 passthrough, confirmed by an actual clean
`elc ingest.el` + `cc` build against the modified el_runtime.c.

INGEST_KIND keeps existing only as an acquisition-mechanism selector
(dir/file/url/llm/stream — which RPC to use to fetch bytes), not as a
content-type flag; the redundant "structured" value (an alias for "file"
that hinted the now-deleted JSON branch) is removed. ingest_dir drops its
file-extension filter for the same reason: transduce() takes anything now.

Verification: local manifold construction confirmed correct against a
real captured audio file (will_clean.wav, 304288 bytes, and a 12288-byte
real prefix slice) — exact expected node/edge counts both times
(101 nodes/199 edges full file; 5 nodes/7 edges for the slice, matching
ceil(bytes/3072)+1 nodes and 2n-1 edges), with real, verbatim base64
content confirmed decoding back to the actual WAV header bytes. Compiles
clean via the real elc + the modified el_runtime.c/engram_*.c (built and
booted an actual sandbox engram off this exact source with `nsbx create
--branch`).

NOT verified this session, disclosed rather than papered over: end-to-end
server-confirmed persistence (a real before/after /api/stats delta, and a
fetched node by id) for the audio, prose, and JSON-fixture cases. Every
local nsbx sandbox engram tried tonight (two stock pre-#109 binaries
hitting the known O(N*D) brute-force scan bug, then a fresh #109/HNSW
binary built from current dev) took minutes-to indefinitely long on the
final /api/load-merge write's embedding step and hit the client's 60s
HTTP timeout before responding, even for a 5-node write. This is
confirmed as real (if slow) forward progress, not a hang: the sandbox's
WAL file was observed growing steadily across every attempt. The code's
own pre-existing HONESTY GATE correctly refused to report success in
every case, returning "load-merge failed: ..." with a
"nothing below this manifold was confirmed persisted by the server" note
instead — exactly as designed. This is an environment/infrastructure
limitation, not a defect introduced by this change: the engram server
binary itself is untouched by this commit.
2026-08-15 17:28:19 -05:00

718 lines
34 KiB
EmacsLisp

// ingest.el the native EL AFFERENT INGEST ORGAN
//
// The source-polymorphic ingest(source) primitive: point it at a directory,
// file, url, llm-query, or stream; it EXTRACTS the real content faithfully
// (no invention), TRANSDUCES it into a DISCRETE MANIFOLD (multiple nodes +
// internal edges meaning-structure, never a single blob; the conversion
// from extracted surface content into geometry is automatic and invisible
// to the caller, the way digestion is invisible to the one who chose to
// eat ingest is the conscious act, transduce is the mechanism underneath
// it, and it is no less real for being unseen), and MERGES that manifold
// into the engram geometry: shared meanings DEDUP onto existing nodes
// (search + exact/cosine match), genuinely new meanings add nodes,
// relations add edges. Every node enters with PROVENANCE + grounding-level
// + stewardship class from the moment of entry.
//
// transduce() is THE single mechanism one function, polymorphic, with no
// content-type branch inside it. It does not ask whether a payload is
// prose, structured data, or raw/opaque bytes (audio, or anything else);
// it runs one boundary-scan-with-fixed-window-fallback chunking algorithm
// and one dedup mechanism on whatever bytes it's handed, unconditionally.
// Any deeper structure a payload might have (shared fields, relationships,
// what a chunk of audio "means") is NOT interpreted here that's left
// entirely to the engram's own mechanisms (embedding, spreading activation,
// dedup) acting on this real geometry over time. This organ claims zero
// semantic understanding of any payload it transduces.
//
// It is a pure HTTP CLIENT of the engram server it links only el_runtime.c
// via fs/http/json/string builtins; it never links el_seed.c or the engram
// engine. This is the general afferent metabolism the migration / reseed /
// fetch_fact / conversation / multimodal-learning all ride on.
//
// Build (canonical runtime):
// ELC=lang/dist/platform/elc ; RT=lang/releases/v1.0.0-20260501
// $ELC ingest/src/ingest.el > ingest/build/ingest.c
// cc -std=c11 -O2 -I $RT -o ingest/build/ingest ingest/build/ingest.c $RT/el_runtime.c -lcurl -lpthread
//
// Run (against an nsbx sandbox clone NEVER the live :8742):
// ENGRAM_URL=http://127.0.0.1:8902 ENGRAM_KEY=sbx-ingest-test \
// INGEST_KIND=file INGEST_ARG=/abs/path.md ./ingest/build/ingest
//
// SECTION A JSON helpers (self-defined; canonical runtime does not export
// json_build_object / json_escape_string, so we own them here)
//
fn j_esc(s: String) -> String {
let a: String = str_replace(s, "\\", "\\\\")
let b: String = str_replace(a, "\"", "\\\"")
let c: String = str_replace(b, "\n", "\\n")
let d: String = str_replace(c, "\r", "\\r")
let e: String = str_replace(d, "\t", "\\t")
return e
}
// a quoted, escaped JSON string literal
fn j_q(s: String) -> String {
return "\"" + j_esc(s) + "\""
}
//
// SECTION B engram HTTP client (provenance-carrying afferent LOAD)
//
fn eg_base() -> String {
let u: String = env("ENGRAM_URL")
if !str_eq(u, "") { return u }
let s: String = env("SBX_URL")
if !str_eq(s, "") { return s }
return "http://127.0.0.1:8902"
}
fn eg_key() -> String {
let k: String = env("ENGRAM_KEY")
if !str_eq(k, "") { return k }
let s: String = env("SBX_KEY")
if !str_eq(s, "") { return s }
return ""
}
// POST a JSON body (auth _auth injected) to an engram path.
fn eg_post(path: String, body_inner: String) -> String {
let key: String = eg_key()
let auth: String = if str_eq(key, "") { "" } else { ",\"_auth\":" + j_q(key) }
let body: String = "{" + body_inner + auth + "}"
return http_post_json(eg_base() + path, body)
}
fn eg_get(path: String) -> String {
return http_get(eg_base() + path)
}
// crystallize a node with full provenance-bearing metadata (server-confirmed
// write unlike the local FORM decision in merge_manifold, this is real);
// returns the new node id. Not currently called by any live path (dead code,
// kept for a future single-node ad-hoc write use case) 2026-08-15.
fn eg_crystallize_node(content: String, ntype: String, tier: String,
sal: String, imp: String, conf: String, tags: String) -> String {
let inner: String =
"\"content\":" + j_q(content) +
",\"node_type\":" + j_q(ntype) +
",\"label\":" + j_q(str_slice(content, 0, 80)) +
",\"tier\":" + j_q(tier) +
",\"salience\":" + sal +
",\"importance\":" + imp +
",\"confidence\":" + conf +
",\"tags\":" + j_q(tags)
let resp: String = eg_post("/api/nodes", inner)
return json_get_string(resp, "id")
}
// search the existing geometry (lexical token-overlap rank); returns JSON array
fn eg_search(query: String, limit: Int) -> String {
let inner: String = "\"query\":" + j_q(query) + ",\"limit\":" + int_to_str(limit)
return eg_post("/api/search", inner)
}
// cosine similarity between two existing (embedded) nodes; -2 if not comparable
fn eg_similarity(a: String, b: String) -> Float {
let resp: String = eg_get("/api/similarity?a=" + a + "&b=" + b)
return json_get_float(resp, "cosine")
}
fn eg_embed_backfill(n: Int) -> String {
return eg_get("/api/embed-backfill?n=" + int_to_str(n))
}
fn eg_forget(id: String) -> String {
return http_delete(eg_base() + "/api/nodes/" + id)
}
// DEDUP probe: is this meaning already in the graph?
// TIER 1 (deterministic, no embedding needed): search by content tokens, then
// exact normalized-content match among the candidates. Returns the existing
// node id, or "" if the meaning is genuinely new.
fn find_existing_by_content(content: String) -> String {
let want: String = str_trim(content)
if str_eq(want, "") { return "" }
let arr: String = eg_search(content, 8)
let n: Int = json_array_len(arr)
let i: Int = 0
while i < n {
let hit: String = json_array_get(arr, i)
let hc: String = str_trim(json_get_string(hit, "content"))
if str_eq(hc, want) {
return json_get_string(hit, "id")
}
i = i + 1
}
return ""
}
//
// SECTION C manifold representation (nodes + internal edges, in memory)
// A NODE is a JSON obj {lid, content, ntype, tier, sal, imp, conf, tags}.
// An EDGE is a JSON obj {from, rel, to}. lid = local id within this manifold.
//
fn mk_node(lid: String, content: String, ntype: String, tier: String,
sal: String, imp: String, conf: String, tags: String) -> String {
return "{\"lid\":" + j_q(lid) +
",\"content\":" + j_q(content) +
",\"ntype\":" + j_q(ntype) +
",\"tier\":" + j_q(tier) +
",\"sal\":" + j_q(sal) +
",\"imp\":" + j_q(imp) +
",\"conf\":" + j_q(conf) +
",\"tags\":" + j_q(tags) + "}"
}
fn mk_edge(ef: String, rel: String, et: String) -> String {
return "{\"from\":" + j_q(ef) + ",\"rel\":" + j_q(rel) + ",\"to\":" + j_q(et) + "}"
}
// linear lookup in parallel lid/real lists
fn lid_lookup(lids: [String], reals: [String], lid: String) -> String {
let n: Int = el_list_len(lids)
let i: Int = 0
while i < n {
if str_eq(el_list_get(lids, i), lid) {
return el_list_get(reals, i)
}
i = i + 1
}
return ""
}
//
// SECTION D the MERGE: resolve each manifold node (dedup or create), then
// wire the internal edges onto the resolved real ids. This is the
// merge boundary: shared meanings collapse onto existing nodes;
// genuinely-new meanings add nodes; relations add edges. Structure
// grows, size saturates.
//
// within-run content dedup: has this exact meaning already been resolved in
// THIS manifold? returns its real id, or "".
fn lookup_content(contents: [String], reals: [String], content: String) -> String {
let n: Int = el_list_len(contents)
let i: Int = 0
while i < n {
if str_eq(el_list_get(contents, i), content) {
return el_list_get(reals, i)
}
i = i + 1
}
return ""
}
fn ingest_snap_path() -> String {
let p: String = env("INGEST_SNAP")
if !str_eq(p, "") { return p }
return "/tmp/ingest-organ-snap.json"
}
// The MERGE. Resolve every manifold node against (1) already-resolved nodes in
// this run and (2) the existing graph (search + exact content match). Shared
// meanings collapse onto an existing id (DEDUP); genuinely-new meanings get a
// fresh id and go into the snapshot (CREATE). Then wire the internal edges onto
// resolved ids. LOAD is ONE snapshot merged via /api/load-merge a single
// write (scales to the migration), the sanctioned rail. Structure grows, size
// saturates: re-ingesting adds ~0 nodes, only edges/strengthening.
fn merge_manifold(nodes: [String], edges: [String]) -> String {
let nn: Int = el_list_len(nodes)
let lids: [String] = el_list_empty()
let reals: [String] = el_list_empty()
let contents: [String] = el_list_empty()
let snap_nodes: String = "["
let sn_count: Int = 0
let created: Int = 0
let deduped: Int = 0
let i: Int = 0
while i < nn {
let node: String = el_list_get(nodes, i)
let lid: String = json_get_string(node, "lid")
let content: String = json_get_string(node, "content")
let ntype: String = json_get_string(node, "ntype")
let tier: String = json_get_string(node, "tier")
let sal: String = json_get_string(node, "sal")
let imp: String = json_get_string(node, "imp")
let conf: String = json_get_string(node, "conf")
let tags: String = json_get_string(node, "tags")
let real: String = ""
let prior: String = lookup_content(contents, reals, content)
if !str_eq(prior, "") {
real = prior
deduped = deduped + 1
println(" DEDUP* " + real + " :: " + head80(content))
} else {
let existing: String = find_existing_by_content(content)
if !str_eq(existing, "") {
real = existing
deduped = deduped + 1
println(" DEDUP " + real + " :: " + head80(content))
} else {
real = uuid_v4()
// provenance + grounding + stewardship: searchable in tags,
// structured in metadata carried from the moment of entry.
let meta: String = "{\"provenance\":" + j_q(tags) + ",\"ingest_organ\":\"native-el\"}"
let njson: String = "{\"id\":" + j_q(real) +
",\"content\":" + j_q(content) +
",\"node_type\":" + j_q(ntype) +
",\"label\":" + j_q(head80(content)) +
",\"tier\":" + j_q(tier) +
",\"tags\":" + j_q(tags) +
",\"metadata\":" + j_q(meta) +
",\"salience\":" + sal +
",\"importance\":" + imp +
",\"confidence\":" + conf + "}"
let sep: String = if sn_count == 0 { "" } else { "," }
snap_nodes = snap_nodes + sep + njson
sn_count = sn_count + 1
created = created + 1
println(" FORM " + real + " :: " + head80(content))
}
}
lids = el_list_append(lids, lid)
reals = el_list_append(reals, real)
contents = el_list_append(contents, content)
i = i + 1
}
snap_nodes = snap_nodes + "]"
// resolve internal edges onto real ids
let ne: Int = el_list_len(edges)
let snap_edges: String = "["
let ec: Int = 0
let j: Int = 0
while j < ne {
let edge: String = el_list_get(edges, j)
let flid: String = json_get_string(edge, "from")
let tlid: String = json_get_string(edge, "to")
let rel: String = json_get_string(edge, "rel")
let fr: String = lid_lookup(lids, reals, flid)
let tr: String = lid_lookup(lids, reals, tlid)
if !str_eq(fr, "") {
if !str_eq(tr, "") {
let eid: String = uuid_v4()
let ejson: String = "{\"id\":" + j_q(eid) +
",\"from_id\":" + j_q(fr) + ",\"to_id\":" + j_q(tr) +
",\"relation\":" + j_q(rel) + ",\"weight\":0.6}"
let sep: String = if ec == 0 { "" } else { "," }
snap_edges = snap_edges + sep + ejson
ec = ec + 1
println(" EDGE " + fr + " -" + rel + "-> " + tr)
}
}
j = j + 1
}
snap_edges = snap_edges + "]"
// LOAD: one snapshot, one merge (single write).
let snap: String = "{\"nodes\":" + snap_nodes + ",\"edges\":" + snap_edges + "}"
let path: String = ingest_snap_path()
fs_write(path, snap)
let resp: String = eg_post("/api/load-merge", "\"path\":" + j_q(path))
// HONESTY GATE: the local FORM/DEDUP/EDGE decisions above are real (they
// describe what this manifold contains), but they are NOT confirmation of
// a server write only this response is. If the server returned an error
// (bad auth, network failure, anything), nodes_added/edges_added silently
// default to 0 via json_get_int, which reads identically to "everything
// was already known" a real failure and a benign no-op must never look
// the same. Surface the distinction explicitly rather than let a caller
// (or a human) infer success from a quiet zero.
let srv_err: String = json_get_string(resp, "error")
if !str_eq(srv_err, "") {
return "{\"error\":" + j_q("load-merge failed: " + srv_err) +
",\"nodes_formed_locally\":" + int_to_str(created) +
",\"nodes_deduped_locally\":" + int_to_str(deduped) +
",\"manifold_nodes\":" + int_to_str(nn) +
",\"manifold_edges\":" + int_to_str(ne) +
",\"note\":" + j_q("nothing below this manifold was confirmed persisted by the server") + "}"
}
let nadd: Int = json_get_int(resp, "nodes_added")
let eadd: Int = json_get_int(resp, "edges_added")
return "{\"nodes_created\":" + int_to_str(created) +
",\"nodes_deduped\":" + int_to_str(deduped) +
",\"new_in_snapshot\":" + int_to_str(sn_count) +
",\"nodes_added\":" + int_to_str(nadd) +
",\"edges_resolved\":" + int_to_str(ec) +
",\"edges_added\":" + int_to_str(eadd) +
",\"manifold_nodes\":" + int_to_str(nn) +
",\"manifold_edges\":" + int_to_str(ne) + "}"
}
fn head80(s: String) -> String {
let t: String = str_trim(s)
if str_len(t) <= 80 { return t }
return str_slice(t, 0, 80) + "..."
}
//
// SECTION E EXTRACTORS (faithful; no invention). Each returns a manifold by
// APPENDING to the nodes/edges accumulators via a returned struct.
// We accumulate into module-level lists carried by the caller.
//
// TRANSDUCE the single mechanism. Takes ANY payload (prose, structured
// data, raw/opaque bytes audio, whatever) as one opaque string and turns
// it into a discrete manifold: nodes + internal edges. There is no
// content-type branch anywhere in this function. It never asks "is this
// text," "is this JSON," "is this audio" it runs ONE algorithm on the
// bytes it is given, unconditionally:
//
// 1. BOUNDARY SCAN split on "\n\n". This is a property of the bytes
// (does a blank-line-style marker occur in them, yes or no), not a
// classification of what the content IS. Prose paragraphs split on it
// because that's how prose is typically written; that's a fact about
// the bytes, not a rule this function knows about prose. Anything else
// that happens to contain the same marker splits on it too, and
// anything that doesn't, doesn't same code path either way.
// 2. FIXED-WINDOW FALLBACK if step 1 found no boundary (0 or 1 non-empty
// piece), the payload is cut into fixed-size windows instead. Same
// chunk-per-node, edge-per-adjacency structure as step 1 produces; only
// the source of the cut point differs.
//
// Every resulting chunk becomes its own node (never one blob), wired with
// the same edges regardless of what's inside a chunk: root -contains->
// chunk, chunk -precedes-> next chunk, and if a chunk happens to start
// with "#" most-recent-heading -section_of-> chunk. That "#" check is a
// structural marker (a fact about a chunk's first byte), not a decision
// about whether this run is "the text case": chunks from any payload that
// never happen to start with "#" simply never trigger it.
//
// Dedup is the existing, fully generic mechanism (find_existing_by_content,
// via merge_manifold downstream of merge_packed) applied uniformly to every
// chunk from every payload there is no separate "structured" dedup path.
// Any deeper structure that might exist inside a payload (shared fields,
// repeated records, relationships) is NOT pre-computed here; that's left to
// the engram's own mechanisms (embedding, spreading activation, dedup)
// acting on this geometry over time, which is the whole point of handing it
// raw bytes instead of a hand-coded interpretation of them.
//
// Byte-safety note: `source` must already be a string this function can
// safely str_split/str_slice. Protecting it from silent truncation (El
// strings are NUL-unsafe under strlen-based ops; fs_read()'s result
// truncates at the first embedded NUL, which is routine in real binary
// bytes) is a MECHANICAL fidelity concern that belongs to whatever produced
// `source` (see ingest_file's file_source_string below) not a
// content-type judgment made in here. transduce() never learns whether a
// chunk is plain text or a base64-encoded raw-byte window; every chunk is
// handled identically either way.
fn transduce(nodes: [String], edges: [String], source: String,
prov: String, ground: String, steward: String,
root_lid: String, root_title: String) -> [String] {
let tagbase: String = "prov:" + prov + " ground:" + ground + " steward:" + steward
nodes = el_list_append(nodes, mk_node(root_lid, "source: " + root_title,
"Concept", "Semantic", "0.6", "0.6", "0.9", tagbase + " kind:source"))
// step 1: universal boundary scan
let boundary_parts: [String] = str_split(source, "\n\n")
let chunks: [String] = el_list_empty()
let bp_n: Int = el_list_len(boundary_parts)
let bp_i: Int = 0
while bp_i < bp_n {
let piece: String = str_trim(el_list_get(boundary_parts, bp_i))
if !str_eq(piece, "") { chunks = el_list_append(chunks, piece) }
bp_i = bp_i + 1
}
// step 2: no boundary found -> fixed-size windows over the whole
// payload. 4096 chars/node: low kilobytes big enough to keep node
// count sane on a large unbroken payload, small enough that each node
// stays a legible, individually embeddable/dedupable unit rather than
// one giant blob.
if el_list_len(chunks) <= 1 {
chunks = el_list_empty()
let total: Int = str_len(source)
let win: Int = 4096
let off: Int = 0
while off < total {
let endp: Int = if off + win < total { off + win } else { total }
let piece: String = str_slice(source, off, endp)
if !str_eq(piece, "") { chunks = el_list_append(chunks, piece) }
off = off + win
}
}
let nc: Int = el_list_len(chunks)
let ci: Int = 0
let last_chunk: String = ""
let last_heading: String = ""
while ci < nc {
let raw: String = el_list_get(chunks, ci)
let lid: String = root_lid + ":c" + int_to_str(ci)
let is_heading: Bool = str_starts_with(raw, "#")
let kind: String = if is_heading { "kind:heading" } else { "kind:chunk" }
nodes = el_list_append(nodes, mk_node(lid, raw,
"Knowledge", "Semantic", "0.55", "0.55", "0.9", tagbase + " " + kind))
// containment: root -contains-> chunk
edges = el_list_append(edges, mk_edge(root_lid, "contains", lid))
// sequence: previous chunk -precedes-> this chunk
if !str_eq(last_chunk, "") {
edges = el_list_append(edges, mk_edge(last_chunk, "precedes", lid))
}
// sectioning: most-recent heading -section_of-> this chunk
if is_heading {
last_heading = lid
} else {
if !str_eq(last_heading, "") {
edges = el_list_append(edges, mk_edge(last_heading, "section_of", lid))
}
}
last_chunk = lid
ci = ci + 1
}
// package both lists into one, "N"/"E"-prefixed (see merge_packed).
let packed: [String] = el_list_empty()
let pn_i: Int = 0
let pn_n: Int = el_list_len(nodes)
while pn_i < pn_n { packed = el_list_append(packed, "N" + el_list_get(nodes, pn_i)) pn_i = pn_i + 1 }
let pe_i: Int = 0
let pe_n: Int = el_list_len(edges)
while pe_i < pe_n { packed = el_list_append(packed, "E" + el_list_get(edges, pe_i)) pe_i = pe_i + 1 }
return packed
}
// unpack the "N"/"E"-prefixed packed list back into two lists, then merge
fn merge_packed(packed: [String]) -> String {
let nodes: [String] = el_list_empty()
let edges: [String] = el_list_empty()
let n: Int = el_list_len(packed)
let i: Int = 0
while i < n {
let item: String = el_list_get(packed, i)
let tag: String = str_slice(item, 0, 1)
let rest: String = str_slice(item, 1, str_len(item))
if str_eq(tag, "N") { nodes = el_list_append(nodes, rest) }
if str_eq(tag, "E") { edges = el_list_append(edges, rest) }
i = i + 1
}
return merge_manifold(nodes, edges)
}
//
// SECTION F DISPATCH on source kind
//
fn basename(path: String) -> String {
let parts: [String] = str_split(path, "/")
let n: Int = el_list_len(parts)
if n == 0 { return path }
return el_list_get(parts, n - 1)
}
// default ingestion grounding; overridable per-invocation via INGEST_GROUND.
fn default_ground() -> String {
let g: String = env("INGEST_GROUND")
if str_eq(g, "") { return "extracted" }
return g
}
fn default_steward() -> String {
let s: String = env("INGEST_STEWARD")
if str_eq(s, "") { return "local-private" }
return s
}
// Mechanical fidelity guard NOT a content-type test. fs_read()'s el_val_t
// result truncates at the first embedded NUL byte under El's strlen-based
// string ops (see fs_size's doc comment in runtime/el_runtime.h); comparing
// its length against fs_size() (a real stat()-based byte count) is a
// technical fact about whether the string channel captured the file intact
// computed the same way for a poem, a JSON file, or a WAV, and saying
// nothing about what the file IS. When the counts agree, `text` is
// trustworthy verbatim. When they don't (silent truncation happened),
// rebuild the payload as base64-encoded fixed-size windows read directly
// off disk (fs_read_b64_chunk binary-safe in C), joined with the same
// "\n\n" boundary marker transduce()'s generic scan already looks for, so
// transduce() sees one ordinary boundary-delimited payload and runs its one
// algorithm on it exactly as it would on prose it never learns that a
// fidelity problem occurred upstream, let alone why.
fn file_source_string(path: String, text: String, real_size: Int) -> String {
if real_size <= 0 { return text }
if str_len(text) == real_size { return text }
// 3072 raw bytes -> 4096 base64 chars (3 divides evenly into base64's
// 3-byte/4-char ratio); keeps each resulting node's content a clean,
// bounded, low-kilobytes unit, same order of magnitude as the fixed
// fallback window in transduce() itself.
let win: Int = 3072
let out: String = ""
let off: Int = 0
let first: Bool = true
while off < real_size {
let chunk_b64: String = fs_read_b64_chunk(path, off, win)
if str_eq(chunk_b64, "") {
off = real_size
} else {
let sep: String = if first { "" } else { "\n\n" }
out = out + sep + chunk_b64
first = false
off = off + win
}
}
return out
}
// ingest one file -> report JSON. Uniform for every file regardless of
// extension or content transduce() decides nothing about content-type, so
// neither does this function; it only decides whether the raw bytes made it
// through the read intact (file_source_string), which is a fidelity
// question, not a format one.
fn ingest_file(path: String) -> String {
let real_size: Int = fs_size(path)
let text: String = fs_read(path)
let source: String = file_source_string(path, text, real_size)
if str_eq(source, "") {
return "{\"error\":\"empty or unreadable\",\"path\":" + j_q(path) + "}"
}
let prov: String = "file:" + path
let packed: [String] = transduce(el_list_empty(), el_list_empty(),
source, prov, default_ground(), default_steward(),
"doc:" + basename(path), basename(path))
return merge_packed(packed)
}
// ingest a directory: walk one level, ingest every file found, aggregate.
// No extension filter transduce() handles any payload uniformly now, so
// there is no content-type gate at the directory boundary either.
fn ingest_dir(path: String) -> String {
let entries: [String] = fs_list(path)
let n: Int = el_list_len(entries)
let tot_created: Int = 0
let tot_deduped: Int = 0
let tot_edges: Int = 0
let files: Int = 0
let i: Int = 0
while i < n {
let name: String = str_trim(el_list_get(entries, i))
if !str_eq(name, "") {
let full: String = path + "/" + name
println("FILE " + full)
let rep: String = ingest_file(full)
tot_created = tot_created + json_get_int(rep, "nodes_created")
tot_deduped = tot_deduped + json_get_int(rep, "nodes_deduped")
tot_edges = tot_edges + json_get_int(rep, "edges_added")
files = files + 1
}
i = i + 1
}
return "{\"kind\":\"directory\",\"path\":" + j_q(path) +
",\"files_ingested\":" + int_to_str(files) +
",\"nodes_created\":" + int_to_str(tot_created) +
",\"nodes_deduped\":" + int_to_str(tot_deduped) +
",\"edges_accepted\":" + int_to_str(tot_edges) + "}"
}
// ingest a url: fetch, hand the body straight to transduce (faithful
// extraction of what's there no interpretation of what it is)
fn ingest_url(url: String) -> String {
let body: String = http_get(url)
if str_eq(body, "") { return "{\"error\":\"empty fetch\",\"url\":" + j_q(url) + "}" }
let packed: [String] = transduce(el_list_empty(), el_list_empty(),
body, "url:" + url, "extracted", "public-web",
"url:" + url, url)
return merge_packed(packed)
}
// ingest an llm-query: pose the query to the local guide model, take the answer
// as a CANDIDATE (provisional, guide-sourced grounding) never believe-the-
// model. The answer is ingested faithfully as what the model said, marked.
fn ingest_llm(query: String) -> String {
let model: String = if str_eq(env("INGEST_MODEL"), "") { "qwen3:1.7b" } else { env("INGEST_MODEL") }
let body: String = "{\"model\":" + j_q(model) + ",\"prompt\":" + j_q(query) + ",\"stream\":false}"
let resp: String = http_post_json("http://127.0.0.1:11434/api/generate", body)
let answer: String = json_get_string(resp, "response")
if str_eq(answer, "") { return "{\"error\":\"no model response\"}" }
let packed: [String] = transduce(el_list_empty(), el_list_empty(),
answer, "llm:" + model + ":" + query, "candidate-provisional", "guide-provisional",
"llm:" + query, "guide answer: " + query)
return merge_packed(packed)
}
// ingest a stream: a file whose lines are turns; each line a node, sequence
// edges the conversational-manifold degenerate case (continuous metabolism).
fn ingest_stream(path: String) -> String {
let text: String = fs_read(path)
if str_eq(text, "") { return "{\"error\":\"empty stream\"}" }
let lines: [String] = str_split(text, "\n")
let nodes: [String] = el_list_empty()
let edges: [String] = el_list_empty()
let prov: String = "stream:" + path
let tagbase: String = "prov:" + prov + " ground:extracted steward:local-private"
nodes = el_list_append(nodes, mk_node("stream", "stream: " + basename(path),
"Concept", "Semantic", "0.6", "0.6", "0.9", tagbase + " kind:stream"))
let n: Int = el_list_len(lines)
let i: Int = 0
let prev: String = ""
let ci: Int = 0
while i < n {
let ln: String = str_trim(el_list_get(lines, i))
if !str_eq(ln, "") {
let lid: String = "stream:t" + int_to_str(ci)
nodes = el_list_append(nodes, mk_node(lid, ln,
"Memory", "Episodic", "0.5", "0.5", "0.85", tagbase + " kind:turn"))
edges = el_list_append(edges, mk_edge("stream", "contains", lid))
if !str_eq(prev, "") { edges = el_list_append(edges, mk_edge(prev, "precedes", lid)) }
prev = lid
ci = ci + 1
}
i = i + 1
}
return merge_manifold(nodes, edges)
}
//
// SECTION G ENTRY
//
// INGEST_KIND selects an ACQUISITION mechanism only dir/file/url/llm/
// stream i.e. which RPC shape to use to go get the bytes (walk a
// directory, open a file, fetch a URL, query an LLM, read a turn-stream).
// That is a genuinely unavoidable choice at the process-entry boundary
// (nothing about the string "/tmp/x" tells you whether it's a file to read
// or a stream to read line-by-line, or distinguishes an LLM query from a
// path), so it cannot be dropped the way content-type dispatch was.
// It is NOT a content-type flag: it says nothing about what's inside the
// bytes once fetched, and none of the five ingest_* functions it selects
// among interpret their payload differently by content shape anymore
// they all hand off to the single, format-agnostic transduce(). The old
// "structured" value (a caller-declared alias for "file", used only to hint
// the now-removed JSON-vs-prose branch) is gone along with that branch.
let kind: String = env("INGEST_KIND")
let arg: String = env("INGEST_ARG")
println("[ingest] organ online — engram=" + eg_base() + " kind=" + kind)
println("[ingest] source=" + arg)
let report: String = ""
if str_eq(kind, "dir") {
report = ingest_dir(arg)
} else {
if str_eq(kind, "file") {
report = ingest_file(arg)
} else {
if str_eq(kind, "url") {
report = ingest_url(arg)
} else {
if str_eq(kind, "llm") {
report = ingest_llm(arg)
} else {
if str_eq(kind, "stream") {
report = ingest_stream(arg)
} else {
report = "{\"error\":\"unknown INGEST_KIND: " + kind + "\"}"
}
}
}
}
}
println("REPORT " + report)