fix(instance): restore InstanceBootstrap init parameter for non-Effec… (#25449)

Co-authored-by: Dax Raad <d@ironbay.co>

packages/opencode/src/server/routes/instance/middleware.ts

@@ -1,6 +1,6 @@
 import type { MiddlewareHandler } from "hono"
 import { Instance } from "@/project/instance"
-import { AppRuntime } from "@/effect/app-runtime"
+import { getBootstrapRunEffect } from "@/effect/app-runtime"
 import { AppFileSystem } from "@opencode-ai/core/filesystem"
 import { WorkspaceContext } from "@/control-plane/workspace-context"
 import { WorkspaceID } from "@/control-plane/schema"
@@ -23,6 +23,7 @@ export function InstanceMiddleware(workspaceID?: WorkspaceID): MiddlewareHandler
       async fn() {
         return Instance.provide({
           directory,
+          init: await getBootstrapRunEffect(),
           async fn() {
             return next()
           },

packages/opencode/src/server/routes/instance/project.ts

@@ -8,7 +8,7 @@ import z from "zod"
 import { ProjectID } from "@/project/schema"
 import { errors } from "../../error"
 import { lazy } from "@/util/lazy"
-import { AppRuntime } from "@/effect/app-runtime"
+import { getBootstrapRunEffect } from "@/effect/app-runtime"
 import { jsonRequest, runRequest } from "./trace"
 
 export const ProjectRoutes = lazy(() =>
@@ -82,7 +82,7 @@ export const ProjectRoutes = lazy(() =>
           Project.Service.use((svc) => svc.initGit({ directory: dir, project: prev })),
         )
         if (next.id === prev.id && next.vcs === prev.vcs && next.worktree === prev.worktree) return c.json(next)
-        await InstanceStore.reloadInstance({ directory: dir, worktree: dir, project: next })
+        await InstanceStore.reloadInstance({ directory: dir, worktree: dir, project: next, init: await getBootstrapRunEffect() })
         return c.json(next)
       },
     )