fix(build): close real local-build gaps found in a hands-on build/run audit
Three verified, currently-live problems, each closed with real evidence (full trace kept in Neuron memory, tags neuron-technologies/neuron,build-audit): 1. dist/soul.c was stale relative to main's own chat.el (11 commits / 459 lines behind, missing PR #122's OpenAI-tools + agentic-loop work and its two "silently break chat" fixes). tools/soulc-stamp.sh --check confirmed it; tools/build-soul-from-dist.sh correctly refused to build (exit 9). Regenerated and re-stamped. No runnable regen script existed anywhere upstream — added tools/regenerate-soul-amalgam.sh, which reproduces the committed amalgam's exact symbol set (byte-for-byte content match, modulo the genuinely new PR #122 functions) and is documented end-to-end in AGENTS.md, including three real elc/elb toolchain gotchas found and root-caused along the way (stale .elh caches silently truncating builds; elb cannot produce this repo's single-TU amalgam; elc silently drops the first function(s) after a comment block in a flat-concatenated compile). 2. tools/build-soul-from-dist.sh failed to link on macOS (`ld: library 'ssl' not found` — Homebrew's openssl@3 is keg-only) and was missing -lssl -lcrypto entirely, drifted from CI's own working recipe. Fixed: adds -L$(brew --prefix openssl@3)/lib on Darwin, matches CI's link line. Verified: dist/neuron now builds and boots clean on a throwaway port/HOME (never touched the live :7770/:8742). 3. Untracked committed *.elh compiler-header caches (elc/elb prefer a stale cached header over recompiling its source, silently, with no error — this is what caused an under-resolved 251-2541-function amalgam multiple times during this audit before the cause was found). Removed from git, gitignored going forward. Also: AGENTS.md and README.md existed on disk but were never committed (git log on both returned nothing) and documented the pre-collapse ~90-tool MCP surface as current. Committed corrected versions reflecting the live 9-op surface (read/write/relate/supersede/think/attend/assert/ground/learn, merged in #153) and the audit-verified build recipe/port topology. Added connectd/ — a minimal local-dev stub for the neuron-connectd MCP sidecar. routes.el/chat.el call 127.0.0.1:7771 for it right now on every soul boot and agentic turn per a real, detailed 2026-06-13 spec (mcp-connectors-adoption-spec.md); the sidecar itself was never built. Meanwhile :7771 is a live three-way collision (axon's unbuilt-Rust default, this connectd contract, and council — the anti-confabulation service actually running there in prod, which live-answers both other things' requests with unrelated 404s instead of a clean bridge-down signal). This stub only implements the documented contract as "zero connectors configured" for local-dev correctness; it does not attempt OAuth or a real MCP client — that is a real, separate product decision. See connectd/README.md for the full trace and the open question left for Will.
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# soul.c.stamp — fingerprint of the .el sources dist/soul.c was generated from.
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# Written by tools/soulc-stamp.sh --write. Do not hand-edit.
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# generated_amalgam_sha256 cdc5e716dbfb797faa1b3e080cbd1ac82a75a258809da70cc5fbd02cc8040692
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# generated_amalgam_bytes 1205007
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7cf5e29d2618db2fca04e6df7aa8954dd6cf9ac5e70aafb8e0b52aa734882131 __compiler__
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# generated_amalgam_sha256 00d1207de8fd872d111e00a37b7dcc46729bf095baa6778de3bcc30b0bf46b05
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# generated_amalgam_bytes 1226805
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MISSING __compiler__
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f8597e10546654bce3fbbe40461b2da59d0e06dbf1b038d1d362d24f949e3911 awareness.el
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b6f3d14ca0c26017a2d617399a6d3754dabb0905e4d5f52eb75d25c4ad18d3c5 chat.el
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2ff2dada732918c788a9ef66c6fd54c7a24cc4bbd4829197fe945d3a75ca1929 chat.el
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42288c212cbf72fb1e8ecbd4d9900e4e9ee1cfa475b7974295c7637f1bf2939f elp-input.el
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b3f77f49d6086932c38bd17fe7a5eaf8bce25685f6fc3e1750f05729c6b49b9e imprint.el
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fba8ffdb9ba72bca5b09ca1c93a520edc52f3f4d8aec2c7585fe9b17e06420b2 manifest.el
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