Commit Graph

37 Commits

Author SHA1 Message Date
Neuron 6934a0e889 chore: the compiler is a build input too, and regenerate under the fixed elc
Neuron Soul CI / build (push) Failing after 14m28s
Neuron Soul CI / deploy (push) Has been skipped
Installing the fixed compiler exposed a blind spot in this gate. On clean main,
with no source changed, soulc-stamp reported OK while the committed amalgam had
gone stale by a line — because the fingerprint covered .el sources and not the
toolchain that turns them into dist/soul.c. That is exactly the class of silent
divergence the gate was written to close, and it had it.

The stamp now fingerprints the elc binary alongside the sources. Demonstrated: with
the old stamp the gate passed after a compiler swap; with this change the same
condition fails, naming __compiler__.

dist/soul.c regenerated under the installed compiler (1,205,027 bytes) and verified:
builds from its own committed input, the declared principal is present in the
resulting binary, interface 110 routes in / 110 out.

Differential evidence that the new compiler is a strict superset — same sources,
both compilers:
  neuron soul        1 differing line, the el_cgi_init emission
  engram server.el   0 differing lines
  mcp-wrapper        0 differing lines
  mcp-proxy          0 differing lines

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
2026-08-09 13:56:11 -05:00
Neuron 2018036bce fix(soul): restore the soul_identity producer — the chat system prompt has been empty for three months (#137)
Five sites in chat.el read state_get("soul_identity") and splice the result into
the system prompt, beside the voice, security and capability rules:

  chat.el:737, 1745, 2620, 3425, 3480

Nothing has written that key since b163fa6. The producer was added 2026-05-02 in
601e0fe and deleted by the awareness refactor days later. Every chat turn since has
built its system prompt with an EMPTY identity section, and nothing reported it.

Found by the #132 state-key gate, which treats a read with no producer as a build
error rather than a silence. That is the entire argument for that gate.

RESTORED VERBATIM, NOT IMPROVED. soul_identity is an env-configurable persona LINE.
It is not soul_identity_context — the graph-derived
[INTELLECTUAL-DNA]/[VALUES]/[MEMORY-PHILOSOPHY] block written at soul.el:184.
Repointing the five reads at that block would have substituted different content and
called it a repair. Whether the chat prompt should ALSO carry the graph-derived block
is a real question and a separate one; it is not smuggled in here.

Verified by the gate that found it: dead reads 6 -> 1, and it now reports the
chat.el baseline entry as STALE — 'entries that no longer match anything; delete
them'. The remaining one is studio.el's soul_principal, untouched by this change.

Rung: BUILT, gate-verified, boots. NOT end-to-end chat-verified — proving the
prompt now carries the line needs a live provider call, which I have not run.

Refs #137, #132

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
2026-08-09 12:18:16 -05:00
Tim Lingo 7b86e6f72c feat(soul): Stage 1 structural audit as a real route — an annotated characterization, not a score (#91)
`runStructuralAudit` has been an advertised MCP tool with nothing behind it: the
dispatcher GET'd /session/begin and returned that unrelated session digest under
an audit tool's name. Meanwhile the failure the audit would have caught ran
silently for about three weeks — the soul reporting 103,089 nodes while the
engram, which OWNS persistence, held ~79,900, a crash discarding the difference,
and every boot reporting green throughout, because nothing in the system ever
compared the two sides.

WHAT THE PATENT SPECIFIES, AND HOW IT SHAPED THIS
  CGI provisional, 05-detailed-description.md, "Stage 1: Structural audit 430".
  Two clauses did the design work. First the four things the module evaluates:
  the density and typed distribution of causal edges; value/execution-record
  consistency; the richness and connectivity of the self-model; and wonder-
  manifest authenticity. Second, and decisively: it "produces a coherence
  assessment 432 — NOT A BINARY SCORE but an annotated characterization of the
  graph's structural properties."

  So every finding carries its numbers AND a plain-language note saying what
  they mean and how they were obtained. There is no pass/fail and no composite
  health figure, and `"score":null` is emitted explicitly so a reader cannot
  mistake its absence for an omission.

WHAT IS IN STAGE 1 (four findings)
  owner_runtime_divergence   — the motivating case. Runtime counts vs the owner's
      own GET /api/stats, the delta, and the trend against the previous audit, so
      a second call answers "is the gap growing?" rather than restating it.
  self_model_connectivity    — the three identity pillars plus the self root:
      present, content length, one-hop degree. This RETIRES the Claude-side vitals
      identity block, which lived outside the system it was checking and went on
      reporting green while the memory-philosophy pillar was absent from the live
      graph. Asking the running soul is the designed mechanism; a shell probe was
      the fourth patch on the same hole.
  typed_edge_distribution    — exact counts against the claim-10 vocabulary, plus
      density, plus a separate count of LOWERCASE near-misses ("causes" vs
      "Causes"): "the vocabulary is unused" and "the vocabulary is misspelled by
      the write paths" are different defects with different fixes.
  orphans_and_dangling_edges — the tool's own long-standing promise.

WHAT IS DEFERRED, AND WHY IT IS DATA RATHER THAN A COMMENT
  Value/execution-record consistency and wonder-manifest authenticity ship as a
  `deferred` array that MEASURES the populations they would need (Prediction and
  WonderQuestion nodes) and reports those counts as the reason. Both are ~0 today
  — WonderQuestion because of a known write/read node-type mismatch. Asserting
  value coherence or a pull-weight correlation on an empty population would be a
  fabricated result, which is worse than a stated gap.

MEASUREMENT HONESTY: EXACT WHERE CHEAP, SAMPLED WHERE NOT, ALWAYS LABELLED
  Counts, edge typing and self-model connectivity are exact. Orphan and dangling
  rates are sampled, because engram_find_node_index is a linear scan — an
  exhaustive dangling check is O(nodes x edges), ~2.2e9 string compares at today's
  scale. Samples are UNIFORM across the whole population (str_index_of_all gives
  every edge offset in one pass, so any index is O(1); json_array_get would have
  been O(n^2)), never head-of-list, and each figure ships with its own sampled /
  population / exhaustive fields. ?edge_sample= and ?node_sample= at population
  size run either check exhaustively. The real fix is an id index in the runtime.

ONE BUG THIS FOUND IN ITSELF, CAUGHT IN TEST
  http_get does not return "" when the owner is unreachable — it returns a JSON
  error object. Testing only for "" made a DEAD owner read as reachable with
  node_count 0, so the audit reported 100% divergence and named it data loss.
  Reachability is now proved by the presence of the node_count field, and the
  owner's raw reply is attached. A confident wrong answer is exactly what this
  route exists to stop.

  Edge findings need relation labels and the runtime has no edge-enumeration
  builtin, so they use the same scratch export GET /api/graph/edges already uses
  (engram_save to TMPDIR, never the owner's canonical file — #117). That is a
  large write on a large graph, so this is a manual route, not a timer; ?edges=0
  skips it.

  neuron-api.el:900-1273  handler + helpers
  routes.el:567,752       GET and POST /api/neuron/audit/structural
  mcp-wrapper/src/main.el:113,682  tool description + dispatch off /session/begin
  dist/soul.c             regenerated (1255 bodies)

Rung: E2E-VERIFIED. Soul built from this branch (gen-soul-amalgam + cc-brain,
921,192 bytes, 16 warnings, 0 errors), booted on throwaway ports 7893/7896/7897
with throwaway HOMEs against a stub owner on 7894. Three scenarios pass: owner
reachable (runtime 62 vs owner 42, delta 20 / 32.2%, trend flat on the second
call; 12/20 edges claim-10 typed, 3 lowercase near-misses; 50/62 orphans, 3/20
dangling — every figure matches the fixture by construction), owner unreachable
(reported as a finding with the raw reply, not a crash), and file mode (owner
"none", divergence undefined). Reached end-to-end through the MCP tool via a
locally built wrapper. verify-soul-contract.sh: GATE PASS, 27/27 routes +
immutability. No process left running; live :7770 and :8742 untouched (GET only).

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
2026-08-09 11:54:42 -05:00
Neuron 9fd8c11670 chore(engine): make dist/soul.c drift a build failure instead of a silent ship (#133)
#133 regenerated the amalgam once and said so itself: 'Nothing in the tree
regenerates this file. Only a human running the recipe. It lags in batches, never
per-change, and it will drift again.'

It drifted again. Every binary deployed on 2026-08-09 was built by build-soul.sh
from a scratch amalgam that never touches dist/soul.c, so the committed build
input fell 2,761 bytes behind the sources by a different route than #133 describes.

Auto-regeneration is not available: the CI workflow records that elc needs 24GB+
of virtual memory and would OOM the runner. So the build cannot regenerate the
file. It can refuse to compile a stale one, for free and with no compiler.

tools/soulc-stamp.sh records a content fingerprint of every .el source at the
moment the amalgam is generated. --check recomputes and compares; divergence exits
1 and names the changed files and the recipe. Wired into CI ahead of the compile.

dist/soul.c regenerated from current sources: 1,176,361 -> 1,179,122 bytes, 1,247
inlined bodies (gate wants >=1200), and verified to compile clean at 903,552 bytes.

Demonstrated to FAIL on the bad input, per postmortem 0004's rule that a gate which
only passes on good input proves nothing:
  fresh stamp        -> OK,   exit 0
  one .el modified   -> FAIL, exit 1, names memory.el
  source restored    -> OK,   exit 0

Refs #133, #111

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
2026-08-09 11:32:56 -05:00
Tim Lingo dd952c0e46 feat(soul): write-through to the persistence owner — memories survive restart (#117)
Neuron Soul CI / build (pull_request) Failing after 14m57s
Neuron Soul CI / deploy (pull_request) Failing after 14m39s
The soul obeys half of its own ownership rule. soul.el:571-573 says "when
ENGRAM_URL is set the HTTP Engram owns persistence — the soul must NEVER write
to the local snapshot", and it doesn't. But nothing was ever built to hand the
soul's writes TO that owner: sync is pull-only (/api/sync -> engram_load_merge),
so every node created inside the soul lived in process RAM and was shed on
restart. Measured live 2026-08-07: soul node_count=102184, engram 79197.

SCOPE CORRECTION vs the earlier internal spec: engram provisional claim 17's
"pull-then-push" is a PEER-ENGRAM to PEER-ENGRAM protocol (claims 15-18 say so
explicitly). The soul is a CALLER of the database API, not a peer. Claim 17 is
NOT authority for a soul<->engram contract and is no longer cited as such. The
design here follows from the ownership rule alone.

Mechanism: a new Accessor, persist.el, is the single boundary. Writes stage a
delta to a filesystem spool and are pushed to the owner via POST /api/load-merge
— NOT POST /api/nodes, which mints a new server-side id (breaking dedup and
edges) and drops label/tier/tags/importance/confidence (verified in a sandbox:
a tier "Canonical" probe came back "Working"). load-merge preserves the id and
every field, dedups nodes by id and edges by (from,to,relation) so retries are
no-ops, and calls persist_canonical() so THE OWNER writes its own file — the
ownership rule is honoured rather than worked around.

Spool-and-drain rather than push-per-write: measured ~0.38s per load-merge at
live scale (79k nodes/176MB), and a chat turn writes 5-7 nodes. The spool is on
disk, not in process state, because the soul serves each connection on its own
pthread and a shared buffer would lose entries to a read-modify-write race. That
also buys crash recovery: writes orphaned by kill -9 are drained on next boot.

Honesty: api_persisted (the gate all 10 MCP write handlers pass through) and
mem_store now assert AT THE OWNER instead of reading back the soul's own RAM.
With the owner down a write returns {"ok":false,"error":"write_not_persisted"}
and the delta is queued — where main returns {"ok":true} for a write that dies.

Coverage: 35 node sites + 9 edge sites routed through the boundary. Deliberately
excluded, with reasons in persist.el: 4 InternalStateEvent sites (Will's own
telemetry carve-out), the boot counter and the persona (both already have
bespoke owner-side write-backs), and soul.el's 54 genesis identity edges
(file-mode only). engram_strengthen and engram_forget are NOT propagated —
load-merge cannot update or delete, and hard-deleting at the owner would fail
verify-soul-contract.sh section B.

Also fixed here:
- routes.el GET /api/graph/edges engram_save()'d straight over the owner's
  canonical snapshot.json — a read route, in a non-owner process, clobbering the
  canonical on every call. Same defect class Will removed from the engram in el
  dc39a61. Now exports to a scratch path. With this gone the soul writes nothing
  at all in HTTP mode.
- persist.el must clear the runtime's _tl_fs_read_len hint after every fs_read.
  In vendored runtime v1.0.0-20260501 that hint becomes the NEXT response's
  Content-Length, so reading a spool file mid-request made an 86-byte reply go
  out as 497 bytes with 411 bytes of adjacent heap trailing it. Caught and fixed
  at our boundary; the runtime class was fixed upstream in el 43636ae, which is
  not the pinned runtime here.

Rung: E2E-VERIFIED, discriminating. Same harness, same engram binary:
  write-through: LEG 1 PRESENT at owner, LEG 2 SURVIVED kill -9 + restart
  main:          LEG 1 ABSENT  at owner, LEG 2 LOST
verify-soul-contract.sh: GATE PASS on both builds (27/27 routes, immutability).

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
2026-08-07 12:47:31 -05:00
Tim Lingo 710761e2d5 fix(engine): send tool_choice.disable_parallel_tool_use on agentic loop (STOPGAP)
The agentic loop keeps only the FIRST tool_use block per round (chat.el:2281,
"Capture first tool_use block only"). Anthropic lets a model emit several
tool_use blocks in one message and requires a tool_result for every one, so a
parallel-tool turn is answered once, the rest are dropped, and the next request
dies with:

  tool_use ids were found without tool_result blocks immediately after

(neuron#78 quotes this as "tool_use ids found without tool_result"; the above is
the API's actual wording - recorded so the next person's grep matches.)

This constrains the wire to match what the loop can assemble:
  "tool_choice":{"type":"auto","disable_parallel_tool_use":true}

STOPGAP - AND THE DURABLE FIX ALREADY EXISTS. A correct multi-tool loop is
already in Will's EL runtime, in C, and the soul does not call it. Verified on
el:origin/main lang/el-compiler/runtime/el_runtime.c: llm_register_tool:9616,
llm_build_tool_results:9743 - which walks EVERY content block, emits one
tool_result per tool_use, and sets is_error for an unregistered tool -
llm_call_agentic:9817 calling it at :9918, iteration cap 10 at :9847. Will's
commit 12d5e77 (2026-04-30). grep for llm_call_agentic/llm_register_tool across
every neuron/*.el returns nothing; dist/soul.c has zero references. chat.el
hand-rolls its own single-tool loop instead, and that is the one that breaks.

The durable fix is therefore to register the soul's tools via llm_register_tool
and call llm_call_agentic - deleting a loop, not writing one. See ADR 0005.

Our own approved spec called this seven weeks ago:
docs/research/agentic-tool-approval-design.md (2026-06-12, "Approved for build"),
line 20 on the defect, line 30 on the goal ("Execute all tool_use blocks in a
turn (one result per block)").

Two edits, because dist/soul.c cannot be regenerated here (Will's gated elc/elb
toolchain is not on this machine):
  (a) chat.el:2255 - source of truth, so a later regen carries the fix.
      One edit covers all three routes: agentic_loop is called from chat.el:2152
      (/api/chat agentic), :2676 (dharma room) and :2496 (agentic_resume).
  (b) dist/soul.c:28173 - generated form, hand-spliced. Line 27624 is the
      non-agentic/OpenAI-compat req_body (no tools) and was left untouched.
Prior art reused rather than reinvented: soul-narrated-runs-20260713.patch
(27,824 bytes) line 78 spliced this same string into the same concat chain on
2026-07-13.

Deliberately NOT ported from that patch, having read it: max_tokens is not
changed by it (16384 sits on both sides of the hunk; our main's 4096 is a
separate output-truncation concern), and its pause_turn pairing fix - same
defect class - is unreachable today because no server-side web_search is wired
(agentic_tools_with_web at chat.el:1418 is never called), so it is untestable
and logged instead.

Proven E2E on a scratch profile and port 7791, never the live chain. A/B against
a pristine origin/main control built from the same vendored runtime: fixed
completed the mission (tools_used read_file x3, 4 iterations, correct answer);
control failed 3/3. Direct API probe confirmed the mechanism - without the field
the model emits 3 parallel tool_use blocks and replaying the unfixed loop's next
turn returns HTTP 400; with it, exactly 1 block.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
2026-08-03 17:07:04 -05:00
will.anderson e610a412b9 regen soul.c from reconciled tree + harden contract gate (#199 by-id, isolation)
Neuron Soul CI / build (pull_request) Failing after 12m40s
Neuron Soul CI / deploy (pull_request) Failing after 14m47s
dist/soul.c: regenerated amalgamation (1.15MB) from the reconciled sources via
the hide-.elh + elc --target=c recipe, so the shipped translation unit CI
compiles now actually carries every landed fix — genesis-boot SIGSEGV (#150),
safety-contact 988 truncation (#96), url-decode multi-word search, honest
receipts (#100/#101), immutability arc (#83), and the bounded payloads (#103).

verify-soul-contract.sh, two non-weakening fixes (both false-NEGATIVE bugs that
spuriously failed a CORRECT soul; neither relaxes what fails a defective one):
 1. #199 by-id gate: verify tombstone/KEPT via /api/neuron/graph?id=<id>&depth=1
    (a compact neighborhood) instead of grepping engram_scan_nodes_json(9999,0)
    — a multi-MB, salience-ordered, 9999-capped whole-graph dump in which the
    salience-0.01 tombstone marker sorts past the cap and vanished.
 2. Isolation: pin SOUL_ISE_URL to the dead axon port. Unsetting ENGRAM_URL was
    not enough — the periodic engram sync defaults its source to the LIVE engram
    (http://localhost:8742), so the 'isolated' gate pulled the operator's real
    brain (56 -> 12k nodes in seconds), which both broke Section B determinism
    and read live state. Now the soul stays on its own store.

Verified GREEN on a throwaway port/HOME (live :7770/:8742/~/.neuron untouched):
gate PASS x3 (presence 27/27, immutability all 5 KEPT); safety-contact POST 218B
/ GET 208B full untruncated; multi-word search (%20 and +) returns ranked hits
with an all-gibberish control at 0; bounded session/begin 1370B; honest ok:false
on a missing-id delete; genesis (ntn-genesis) boots clean through mem_save with
no SIGSEGV.
2026-08-03 11:01:46 -05:00
will.anderson 9bbb4f2af8 Bound beginSession/compileCtx payloads to a compact digest
Neuron Soul CI / build (pull_request) Successful in 4m19s
Neuron Soul CI / deploy (pull_request) Has been skipped
Port the payload-bounding fix (PR #102, commit 872120c) onto main. The
session-init endpoints projected unbounded engram nodes (~900KB), closing
the MCP client socket on every beginSession. Cap the lists (8 activated /
10 recent for begin_session, 10/20 for compile_ctx) and project each node
to a light identity + a bounded, UTF-8-safe content snippet via
api_compact_node / api_compact_activated / api_utf8_trunc. Response drops
~900KB -> ~12KB; full content stays available via recall/fetch/inspectGraph.

Regenerate dist/soul.c (the CI-built amalgamation) and dist/neuron-api.c
from source. The soul.c regen also compiles in already-merged source the
previously-committed soul.c was stale against (agent write/edit receipt
fixes, #100/#101); verified via scripts/verify-soul-contract.sh
(PRESENCE + IMMUTABILITY PASS) and a clean CI-style cc build.
2026-08-01 11:37:04 -05:00
will.anderson 3ae07cc7b0 harden(neuron-dev-setup): fix 7 fresh-Mac onboarding installer bugs (#99)
Neuron Soul CI / build (pull_request) Has been cancelled
Neuron Soul CI / deploy (pull_request) Has been cancelled
Co-authored-by: Neuron <will.anderson@neurontechnologies.ai>
Co-committed-by: Neuron <will.anderson@neurontechnologies.ai>
2026-07-22 21:49:30 +00:00
will.anderson 40d800195a Tombstone the remaining forget paths (close the immutability arc)
Phase 1 tombstoned memory/delete + node/delete, but the generic forget
path was still destructive. This routes every forget through the same
tombstone semantics so nothing in the daemon can hard-delete an engram
node anymore.

Canonical helper: mem_tombstone (memory.el, imported first so every module
can call it) — keep the node + its edges, record a Tombstone marker, never
engram_forget. neuron-api's tombstone_node now delegates to it (single
source of truth).

Per-path before -> after:
- memory.el `mem_forget`      hard delete (engram_forget) -> tombstone. This
  alone fixes both callers: the /api/neuron/memory/forget route
  (handle_api_forget) and the cultivate op=="forget".
- awareness.el autonomous `forget` action  engram_forget -> mem_tombstone.
  The soul can no longer autonomously hard-delete a memory.
- mcp-wrapper tool_forget  was a FAKE no-op that returned {"ok","deleted"}
  without deleting OR tombstoning -> now routes to the soul's tombstoning
  /api/neuron/memory/delete; tool description fixed to say it
  supersedes/tombstones (recoverable), not "Remove a node".

Left intentionally as hard deletes (internal GC / lifecycle, not user
memory, all call engram_forget directly): session-summary replace
(chat.el), mem_consolidate dedup (memory.el), session-start telemetry
pruning (soul.el), session lifecycle (sessions.el).

Regenerated both ship paths under a 3GB physical-RSS watchdog (peak ~32MB):
dist/soul.c (single-TU amalgamation, macOS/Linux) and the per-module
dist/{memory,awareness,neuron-api}.c (Windows/Linux build). Verified: no
forget handler calls engram_forget; a forget leaves the node present +
tombstone marker. Gate (neuron-ui verify-soul-contract.sh, new memory-forget
row): PRESENCE + IMMUTABILITY PASS.
2026-07-18 13:22:43 -05:00
will.anderson d337fcb265 Make engram deletes/updates immutable (tombstone + supersede)
The soul was hard-deleting engram nodes: memory/delete and node/delete
called engram_forget (frees the node and drops its incident edges), and
node/update created a replacement then forgot the original with no link
back. That violates the day-one rule that engram nodes are immutable —
memory could be silently, irrecoverably destroyed via the API.

Convert the three destructive handlers to Will's immutability semantics,
mirroring the pattern memory/update and knowledge evolve/promote already
use:

- node/update  -> create the new node, wire a "supersedes" edge new->old,
  KEEP the original. No engram_forget. (Was: create + forget old, no edge.)
- memory/delete and node/delete -> TOMBSTONE: keep the node AND its edges,
  create a Tombstone marker node (content = target id, label
  "tombstone:<id>") wired with a "tombstones" edge. Never engram_forget.
  Default bounded list reads (handle_api_list_typed / the memory list) hide
  tombstoned nodes and the markers; ?include_deleted=1 returns them, and
  internal cognition + /api/graph/nodes still traverse them. memory/update
  was already correct and is unchanged.

Full-graph hiding on /api/graph/nodes is deliberately NOT done at the el
layer: json_array_get is O(index), so filtering that endpoint (called with
limit up to 999999) would be O(n^2). That hide needs a runtime scan filter
and is a separate follow-up; nodes there remain traversable, tagged
status:deleted via the marker edge.

Regenerated dist/soul.c from these sources (flat single-TU amalgamation,
compiled under a 3GB physical-RSS watchdog, peak ~32MB). Verified with
scripts/verify-soul-contract.sh in neuron-ui: PRESENCE passes (all 27
routes) and IMMUTABILITY passes (all four mutation routes KEPT; deletes
produce a real tombstone marker and hide from the default list).
2026-07-17 16:42:30 -05:00
will.anderson 1011d8e5be regen dist: rebuild soul.c from corrected sources (OOM gone, Track B compiled in)
Neuron Soul CI / build (pull_request) Successful in 4m12s
Neuron Soul CI / deploy (pull_request) Has been skipped
Regenerates the combined dist/soul.c and per-module dist/*.c from the current
El sources, on top of the elc-source-typo fixes (PR #77) and the Track B
threat-to-others routing (PR #76), both already on this branch.

Validated end to end under a physical-RSS watchdog (macOS silently ignores
ulimit -v / RLIMIT_AS, so every elc/elb run was RSS-polled and kill -9'd at a
3GB ceiling, one module at a time):

- OOM is GONE. The stale dist/soul-with-nlg.el (which still carries the
  malformed string literals) explodes to 3.3GB+ and is watchdog-killed at ~90%.
  With the typos fixed, every one of the 48 modules compiles at <=18MB peak RSS,
  and the full flat amalgamation compiles as a single translation unit at ~68MB.
  The 700GB pathology was purely the unbounded-parser-on-malformed-literal loop;
  no malformed construct means no loop.
- The regenerated soul.c contains Track B: safety_classify_hard_bell ->
  threat_other -> safety_hard_directive routes credible threat-to-others to 911
  and explicitly NOT to 988 / the safety contact. Verified in source, in the
  emitted C, and in the linked binary's strings. Track A (abuse / self_harm)
  is unchanged and still checked first.
- The regenerated soul links to a working native arm64 binary and boots: serves
  on a throwaway port, /health returns 200, awareness loop runs.

Also fixes one source blocker discovered during regen (unrelated to the typos
or Track B): chat.el handle_chat_agentic left a void `if { println(...) }` in
value position, which the current elc lowers to `_if_result = (println(...))`
(assigning void) -> invalid C. Bound an explicit Bool so the branch is
non-void; behavior unchanged (still only logs on persist failure).

NOTE (runtime dependency, for controlled deploy): this branch's chat.el calls
engram_get_node_by_label, which the canonical el-compiler/runtime does not yet
declare/define (the release runtime v1.0.0-20260501 has it; the newest runtime
has arena + http_serve_async but not this). Building the soul requires a runtime
that has all three. Land engram_get_node_by_label into the runtime package
before this soul.c can be built in CI.

Do not merge — regen + Track B going live is a controlled-deploy call.
2026-07-14 18:45:14 -05:00
will.anderson c8cb425412 soul: per-tick arena bracketing in awareness_run + hand-patched dist/soul.c
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awareness_run's while-loop ran outside any request arena, so every
allocation in every 1s tick (search JSON, heartbeat payloads, curiosity
activations) was treated as permanent by the runtime — 7.5GB RSS in
under a minute. Bracket each iteration with el_arena_push/el_arena_pop
(same pattern the compiler emits for scoped blocks; state_set/state_get
persist separately via el_strdup_persist and are unaffected).

dist/soul.c carries the same change hand-patched at the compiled
awareness_run site — elc is currently unsafe to run locally (pathological
memory on sessions.el), so the generated C was patched to match the
source, verified line-for-line against the compiler's own conventions.

MUST be paired with el repo PR #64 (el_strdup_persist for stored engram
fields): per-tick arena reclamation widens the write-corruption window
without it. Verified together: 5h live soak on the recovered production
snapshot, flat RSS, write-field-integrity clean.

Note: dist/soul.c still needs a full elc regen to pick up PR #73's
source changes (consent tiers) — tracked separately; this patch does not
regress that (those changes were never in dist).
2026-07-13 16:24:15 -05:00
will.anderson 2688cb722a chore(dist): update soul.c with PR #63/#65/#66 + Task 1 chat.el changes
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Manually adds compiled C equivalents for:
- distill_transcript() — last-3-messages extractor; wires into
  handle_dharma_room_turn and handle_dharma_room_turn_agentic
- current_engine_note() — appended to system prompt in handle_chat
  so Neuron can answer 'what model am I running on?' truthfully (PR #66)
- llm_base_url / llm_wire_format / json_escape / openai_chat_complete —
  OpenAI-compatible provider path in handle_chat_agentic (PR #65)
- flag_true() — tolerant agentic flag check (PR #63)

Compile verified: 6 pre-existing warnings, 0 errors.
2026-07-01 11:42:56 -05:00
will.anderson 51bea5507b prevent engram corruption: idempotent boot seeding, session-start event cap
Fix 1: mem_boot_count_inc prunes all existing soul:boot_count nodes before
        inserting the new one — keeps exactly one boot counter node instead
        of accumulating a new node per boot. Also fixes a latent ordering
        bug where engram_search_json oldest-first results caused the counter
        to read stale (low) values once >3 copies accumulated.

Fix 3: handle_api_node_delete comment clarified — the no-verify exception
        is correct for deletes (not a write path); read-back-verify is for
        writes only.

Fix 4: emit_session_start_event prunes old session-start InternalStateEvent
        nodes after each boot, keeping the 10 most recent and forgetting
        older ones. Prevents unbounded accumulation of ~120+ copies.
2026-06-29 11:09:01 -05:00
will.anderson 933547265e chore(dist): compile PRs #60/#61 into soul.c
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- PR #60: inject operator home dir into system prompt (#30)
  Adds OPERATOR IDENTITY section so the LLM correctly resolves
  'my files/notes/desktop' to the actual running user's $HOME.
  Prevents identity confusion between imprint author and operator.

- PR #61: plan-mode endpoint POST /api/chat {mode:'plan'} (#27)
  Adds handle_chat_plan — returns {steps:[{id,title,detail}]} JSON.
  Wired into all three /api/chat route handlers. Grounds the plan
  via engram_compile (same as agentic path) for context awareness.

dist changes:
  - soul.c: both PRs compiled in; build_system_prompt updated to
    2-param signature (ctx, chat_mode); handle_chat_plan added
  - chat.c/routes.c/chat.elh: individual module outputs updated
  - elp-c-decls.h: remove stale 1-param build_system_prompt decl,
    add handle_chat_plan declaration
  - soul.elh.c: new soul header declarations file (from PR #60)

Compile verified: cc -O2 -DHAVE_CURL soul.c el_runtime.c -lcurl
Binary: 805K arm64, smoke test passes (port in use = expected).
2026-06-29 08:17:45 -05:00
will.anderson a77578e243 chore(dist): compile PRs #56/#57/#58 into soul.c
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- PR #56: vision in agentic chat path (image content block)
- PR #57: /api/connectors/call route — proxy connector tool calls
- PR #58: /api/neuron/list/<type> off-by-one fix (str_slice 16->17)

Live-verified: list/BacklogItem returns 50 nodes (was 0 before #58 fix).
Binary size: 3.8MB.
2026-06-28 12:29:52 -05:00
will.anderson 2589183775 Expose node/create endpoint and respect label field in memory writes 2026-06-27 11:49:09 -05:00
will.anderson dcc0bf550a Add Ollama provider, portable memory, cultivation digest, refugee importer, GLM-OCR spike
- P0: unified soul binary with engram_node_full fix, read-back-verify, search fix
- P0: move API keys from plaintext plists to macOS Keychain
- P0: fix MCP backend URL (port 8742 → 7770)
- P1.6: memory-export/import scripts (AES-256-CBC, versioned .neuronmem format)
- P1.7: nightly cultivation digest with sharpness metric (launchd at 23:55)
- P2.10: Ollama provider in agentic loop (SOUL_LLM_PROVIDER=ollama)
- P3.12: refugee importer for ChatGPT/Screenpipe/generic formats
- P3.13: GLM-OCR spike — SHIP IT (mlx-vlm, 1.59GB, photo-to-memory.sh)
2026-06-27 11:46:30 -05:00
will.anderson bdc07be344 chore(dist): compile EL recall/dedup/session-continuity fixes to C
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Updates soul.c and all per-module .c files with:
- parse_float_x100() engram score fix
- id_in_seen dedup wiring across session_preload
- session-end summary hook + session-start recall
- Emergency structural repair (no duplicate fns, all callsites wired)
2026-06-23 13:04:06 -05:00
Tim Lingo f6c4ea70a0 fix(chat): forbid fake tool calls in tool-less (Just chat) mode
Neuron Soul CI / build (pull_request) Successful in 4m47s
REPRODUCED: in the non-agentic path (Tools off / 'Just chat'), asking for
tool-work makes the model role-play tool use — it emits a fake ```json {...}```
'tool call' and says 'let me search/query/pull your sessions' while NOTHING
runs. Reads as a broken/lying app. (The agentic path is fine: verified it
calls search_memory and reports honestly.)

Root cause: build_system_prompt (handle_chat, the tool-less path) never told
the model it has no tools this turn, so it fabricated.

Fix: add a NO-TOOLS directive to the non-agentic system prompt — never emit
tool calls / JSON tool blocks / 'let me pull...' narration; answer from context
only; if a tool is truly needed, say so in one sentence and tell the user to
turn Tools on. Applied to chat.el (source) AND dist/soul.c (the curated TU the
CI compiles), so the CI-built binary carries it.

Verified the FABRICATION repro on the live local soul; could not verify the
patched binary locally (no matching el-runtime version on this machine — a
hand-link against origin/main runtime 404s on all routes). Builds correctly via
CI, which links soul.c against the pinned runtime.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-21 11:57:24 -05:00
will.anderson ceef82464a chore(dist): update pre-compiled soul.c to patched4
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Incorporates PRs #22/#23/#24:
- agentic_tools_all dedup fix (no duplicate web_search tool)
- workspace scope functions (agent_workspace_root, path_within_root, resolve_in_root)
- updated dispatch_tool with workspace confinement
- canonical-self bridge (ensure_self_canonical_bridge)

Also incorporates CI link fix from PR #26 (soul.c is self-contained, no
other dist/*.c needed). Fixes the CI build step which was compiling the
old June-16 soul.c that predated all these changes.
2026-06-18 12:19:54 -05:00
Tim Lingo 5ddb860201 fix(soul): ratio guard against genesis seeding over a populated engram
Genesis boot previously seeded a fresh identity and saved it over snapshot.json
whenever the in-memory graph looked empty. Replace the fixed node-count threshold
with a ratio guard: refuse to seed when the on-disk snapshot is large
(>200KB) but the loaded graph is sparse (< disk/16000 nodes).

KNOWN LIMITATION: this gates only the seed/pre-serve-save path. The deeper cause
is a non-atomic engram_save (fopen wb truncates to 0 before writing 47MB), which
creates a window where a concurrent load reads an empty file -> genesis -> and if
guard_disk is read in that same window the guard passes. The real fix is an
atomic engram_save (temp + fsync + rename) in el_runtime.c, tracked separately.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-17 13:18:35 -05:00
Tim Lingo 6d8a992716 feat(soul): add safety module, expand connectors API, memory-recall bug notes
- safety.el/.elh: new safety module
- neuron-api.el, routes.el, soul.el, chat.el: connectors API expansion
- regenerated dist/ C artifacts
- MEMORY_RECALL_BUG.md: investigation notes

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-17 13:18:35 -05:00
will.anderson 00f15b094b feat(soul): add sessions layer, MCP connectors, conversation continuity fix
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- sessions.el: new sessions module with session management and approval gate
- routes.el: wire /api/sessions routes (list, get, create, approve, tool_result)
- chat.el: thread-aware activation — short messages anchor to last reply
  before engram compilation so follow-ups stay on-topic
- chat.el: agentic path tracks per-session history (session_hist_{id})
  instead of shared conv_history, seeding each turn with prior context
- chat.el: add call_neuron_mcp, dispatch_tool, is_builtin_tool, next_bridge_id
  agentic_loop, bridge_save, agentic_resume, handle_tool_result
- dist/soul: rebuild with all of the above
2026-06-15 12:40:47 -05:00
will.anderson 0bd8e0a2cd soul: persist sessions across restarts via local snapshot
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On startup, prefer the local engram snapshot if it has >50 nodes.
HTTP Engram is only used on first boot (no snapshot yet). This means
sessions, conversation history, and in-process state survive daemon
restarts.

awareness.el: sync source with compiled binary (periodic mem_save
on heartbeat was already in the binary but not in source).

Rebuilds soul.c with the new startup logic and ships updated binary.
2026-06-05 11:35:07 -05:00
will.anderson b163fa6b85 feat(awareness): route ISE writes to HTTP Engram, configurable tick and heartbeat interval, http_serve_async for concurrent awareness loop 2026-05-13 15:45:31 -05:00
will.anderson 48ecd83421 fix: restore elb build — import paths, morphology deps, C master declarations header
- Fix wrong ELP import paths in soul.el, elp-input.el, studio.el
  (../foundation/elp/src → ../foundation/el/elp/src)
- Add missing import "morphology.el" to all 29 language morphology modules
- Recompile all affected dist/*.c with correct cross-module declarations
- Add dist/elp-c-decls.h: C-level master forward declarations for ELP package
  (enables elb --force-include to resolve undeclared cross-module calls)
2026-05-08 19:43:57 -05:00
will.anderson ffadafb0bf soul: native cognitive API — port all MCP logic to soul daemon
neuron-api.el is a new first-class El module that implements all Neuron
cognitive API handlers natively — no HTTP round-trips, no MCP wrapper,
direct engram builtin calls. All capabilities that previously lived in
the MCP wrapper adapter now live here in the soul.

Handlers: begin_session, compile_ctx, remember, recall, search_knowledge,
browse_knowledge, capture_knowledge, evolve_knowledge, promote_knowledge,
browse_processes, define_process, log_state_event, list_state_events,
inspect_config, tune_config, inspect_graph, link_entities, list_typed,
consolidate.

Routes wired in routes.el under /api/neuron/* (GET + POST).

Also compiles all loop-1/loop-2 .el source changes into dist/*.c and
rebuilds the binary. memory.elh and neuron-api.elh updated with new exports.
2026-05-06 22:27:34 -05:00
Will Anderson bc025d52e7 Add agentic tool access for Neuron in DHARMA rooms
Adds handle_dharma_room_turn_agentic to chat.el — same full tool loop
as handle_chat_agentic but reads transcript directly (not message), and
returns {response, cgi_id, tools_used} to match the dharma room shape.

Registers dharma_room_turn_agentic as a new event type in routes.el so
the studio can dispatch @neuron turns through this dedicated path.
2026-05-03 21:47:42 -05:00
Will Anderson 2665810962 soul: parameterize CGI ID + add dharma_room_turn handler
- soul.el: SOUL_CGI_ID, SOUL_ENGRAM_PATH, SOUL_IDENTITY env vars;
  state_set("soul_snapshot_path") so callers can find it; only call
  init_soul_edges() when cgi_id == "ntn-genesis"
- chat.el: handle_dharma_room_turn — soul builds its own context from its
  own engram, assembles system prompt, calls LLM, persists episodic memory;
  also fix is_new_tool scoping bug in handle_chat_agentic (use has_tool)
- routes.el: wire dharma_room_turn event type before chat_as_soul branch
- rebuild dist/neuron: handle_dharma_room_turn now compiled in
2026-05-03 17:55:37 -05:00
Will Anderson d500415316 Fix agentic tool loop: El scoping rules, json_get_raw for array/object fields, result truncation 2026-05-03 12:36:42 -05:00
Will Anderson e299c92662 Fix engram_compile: fetch pinned nodes directly when vector search empty
Replace scan-by-offset fallback with engram_get_node_json calls for the
known high-salience identity nodes (family, origin). Offset-based scanning
is order-dependent and unreliable; direct ID fetch is stable regardless of
snapshot position. Ensures biographical context (Fox, Bobby, etc.) is
always in the system prompt when vector search returns nothing.
2026-05-03 11:19:14 -05:00
Will Anderson 71ab7eafde add chat_as_soul handler for multi-soul rooms
Routes a new event_type "chat_as_soul" through dharma/recv. The Studio
preassembles the system_prompt + transcript and dispatches per-speaker;
the soul-binary just performs the LLM call as the requested speaker_slug.
No engram_compile here — each soul has its own engram (88xx) and the
Studio queries it before composing the prompt.

Also: track the previously-untracked split source modules (chat, routes,
memory, awareness, studio) and add build.sh so the binary can be rebuilt
without the studio’s concat trick. elb resolves the import graph and
emits one .c per .el; we link them together with cc. dist/soul-el now
points at dist/neuron via symlink (matching the launchctl plist).
2026-05-03 04:17:02 -05:00
Will Anderson 5cb9c39b18 build soul with fixed elc v1.2.0 2026-05-03 00:27:54 -05:00
Will Anderson 601e0febf5 make soul identity configurable via env, remove hardcoded references 2026-05-02 23:00:35 -05:00
Will Anderson 64053851db Compile soul.el to native El binary for the first time
- Remove duplicate unix_timestamp() definition from soul.el that
  conflicted with the runtime builtin
- Add dist/soul-el: El-compiled native binary (~387K)
- Add dist/soul: symlink to dist/soul-el (replaces neuron-wrk path)
- Add dist/soul.c and dist/soul-with-decls.c: generated C intermediates
2026-05-02 14:44:08 -05:00