Tim Lingo 5ddb860201 fix(soul): ratio guard against genesis seeding over a populated engram ...

Genesis boot previously seeded a fresh identity and saved it over snapshot.json
whenever the in-memory graph looked empty. Replace the fixed node-count threshold
with a ratio guard: refuse to seed when the on-disk snapshot is large
(>200KB) but the loaded graph is sparse (< disk/16000 nodes).

KNOWN LIMITATION: this gates only the seed/pre-serve-save path. The deeper cause
is a non-atomic engram_save (fopen wb truncates to 0 before writing 47MB), which
creates a window where a concurrent load reads an empty file -> genesis -> and if
guard_disk is read in that same window the guard passes. The real fix is an
atomic engram_save (temp + fsync + rename) in el_runtime.c, tracked separately.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

2026-06-17 13:18:35 -05:00

.gitea/workflows

fix(ci): use soul.c-first link with --allow-multiple-definition

2026-06-12 12:22:55 -05:00

cli

feat(cli): Claude-as-Neuron CLI tooling + soul-side handoff

2026-06-09 20:36:38 -05:00

dist

fix(soul): ratio guard against genesis seeding over a populated engram

2026-06-17 13:18:35 -05:00

docs

docs: add architecture, R&D, and patent strategy docs

2026-06-10 17:31:07 -05:00

mcp-proxy

feat: add mcp-proxy and mcp-wrapper source (MCP front-door for Claude Code)

2026-06-10 17:44:01 -05:00

mcp-wrapper

feat: add mcp-proxy and mcp-wrapper source (MCP front-door for Claude Code)

2026-06-10 17:44:01 -05:00

scripts

feat(gke): add Dockerfile, deploy scripts, and GKE CI workflow

2026-05-09 20:30:05 -05:00

tests

fix(chat): harden bridge_save/agentic_resume against empty and corrupt state

2026-06-17 13:07:43 -05:00

.gitattributes

chore(repo): suppress generated dist/ artifacts in diffs

2026-06-14 15:36:54 -05:00

awareness.el

self-review 2026-06-11: add WM-autobiographical curiosity seed

2026-06-11 08:45:55 -05:00

awareness.elh

feat(soul): add sessions layer, MCP connectors, conversation continuity fix

2026-06-15 12:40:47 -05:00

chat.el

fix(chat): harden bridge_save/agentic_resume against empty and corrupt state

2026-06-17 13:07:43 -05:00

chat.elh

feat(soul): add safety module, expand connectors API, memory-recall bug notes

2026-06-17 13:18:35 -05:00

Dockerfile

fix: build engram from source in Docker image

2026-05-11 12:39:36 -05:00

elp-input.el

fix: restore elb build — import paths, morphology deps, C master declarations header

2026-05-08 19:43:57 -05:00

elp-input.elh

feat(soul): add safety module, expand connectors API, memory-recall bug notes

2026-06-17 13:18:35 -05:00

entrypoint.sh

feat(docker): switch soul image to engram HTTP mode with entrypoint script

2026-05-09 20:46:17 -05:00

HANDOFF-engram-write-corruption.md

Add Phase 0 live-runtime findings to engram write-corruption handoff

2026-06-08 16:25:12 -05:00

imprint.el

fix(soul): address review issues in feat/layer-imprint

2026-06-11 11:46:31 -05:00

imprint.elh

feat(soul): Layer 3 — imprint.el with bounded API surface

2026-06-11 11:30:30 -05:00

manifest.el

make soul identity configurable via env, remove hardcoded references

2026-05-02 23:00:35 -05:00

MEMORY_RECALL_BUG.md

Merge PR #14: feat(soul): MCP connectors — /api/connectors proxy + per-connector auto-approve

2026-06-15 11:37:34 -05:00

memory.el

soul loop-1: identity loading, boot counter, internal state events, richer awareness

2026-05-06 22:02:05 -05:00

memory.elh

feat(soul): add safety module, expand connectors API, memory-recall bug notes

2026-06-17 13:18:35 -05:00

neuron-api.el

feat(soul): add safety module, expand connectors API, memory-recall bug notes

2026-06-17 13:18:35 -05:00

neuron-api.elh

feat(neuron-api): add identity/values write protection

2026-05-13 11:47:54 -05:00

routes.el

feat(soul): add safety module, expand connectors API, memory-recall bug notes

2026-06-17 13:18:35 -05:00

routes.elh

feat(soul): add safety module, expand connectors API, memory-recall bug notes

2026-06-17 13:18:35 -05:00

safety.el

feat(soul): add safety module, expand connectors API, memory-recall bug notes

2026-06-17 13:18:35 -05:00

safety.elh

feat(soul): add safety module, expand connectors API, memory-recall bug notes

2026-06-17 13:18:35 -05:00

sessions.el

Merge pull request 'fix(sessions): unify dual suspension systems, wire approve to agentic_resume' (#18) from fix/agentic-tool-approval-unification into main

2026-06-17 18:06:01 +00:00

sessions.elh

feat(soul): add sessions layer, MCP connectors, conversation continuity fix

2026-06-15 12:40:47 -05:00

soul-talk.html

feat(soul): add sessions layer, MCP connectors, conversation continuity fix

2026-06-15 12:40:47 -05:00

soul.el

fix(soul): ratio guard against genesis seeding over a populated engram

2026-06-17 13:18:35 -05:00

soul.elh

feat(soul): add safety module, expand connectors API, memory-recall bug notes

2026-06-17 13:18:35 -05:00

stewardship.el

feat(steward): behavioral profiling and continuity detection — drift, discontinuity, identity anomaly

2026-06-11 11:58:43 -05:00

stewardship.elh

feat(steward): behavioral profiling and continuity detection — drift, discontinuity, identity anomaly

2026-06-11 11:58:43 -05:00

studio.el

fix: restore elb build — import paths, morphology deps, C master declarations header

2026-05-08 19:43:57 -05:00

studio.elh

feat(soul): add safety module, expand connectors API, memory-recall bug notes

2026-06-17 13:18:35 -05:00

S

Description

Neuron - the canonical CGI substrate. Real soul.el lives here.

16 MiB

Languages

Emacs Lisp 91.1%

Python 3.9%

Shell 2.1%

HTML 1.5%

Dockerfile 1.4%