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fix(routes): /api/graph/edges must not write the canonical snapshot

This route called engram_save() over ~/.neuron/engram/snapshot.json — the
engram server's CANONICAL store — then fs_read it back, to answer a READ
query. A read route overwriting the persistence owner's file.

This defect was fixed once before (export redirected to a scratch path). It
came back tonight in the @route dispatch conversion: the hand-written dispatch
block held the FIXED version, the @route-decorated copy held the unfixed one,
and the merge kept the decorated copy. Calling the endpoint afterward
overwrote the canonical snapshot and immediately preceded an engram crash.

Now calls engram_edges_json(limit, offset) — the builtin the route's own TODO
asked for — which reads g->edges directly. No file is written or read.
Bounded: limit defaults to 1000, offset supported, so the whole-graph read
that fell over is not reachable by default.

Verified: same request that previously rewrote snapshot.json now leaves it
byte-identical (sha256 unchanged before/after), and returns real edge records
with every persisted field.

2026-08-15 20:13:46 -05:00

.gitea/workflows

ci: relax DHARMA soul-contract proof gate to non-blocking during cultivation

2026-08-15 12:32:39 -05:00

cli

feat(cli): Claude-as-Neuron CLI tooling + soul-side handoff

2026-06-09 20:36:38 -05:00

connectd

fix(build): close real local-build gaps found in a hands-on build/run audit

2026-08-15 17:54:30 -05:00

council

feat(council): anti-confabulation voting layer for memory writes

2026-06-29 12:38:24 -05:00

dist

Merge remote-tracking branch 'refs/remotes/origin/main' into fix/mcp-wrapper-agentic-routing

2026-08-15 19:36:41 -05:00

docs

docs(architecture): record the 2026-08-14 deep-night sessions

2026-08-15 19:39:50 -05:00

mcp-proxy

feat: add mcp-proxy and mcp-wrapper source (MCP front-door for Claude Code)

2026-06-10 17:44:01 -05:00

mcp-wrapper

fix(mcp-wrapper): route agentic ops to the engram, and stop fabricating a cause

2026-08-15 19:35:06 -05:00

neuron-dev-setup

harden(neuron-dev-setup): fix 7 fresh-Mac onboarding installer bugs (#99 )

2026-07-22 21:49:30 +00:00

scripts

feat(gate): make a state_get with no producer a build error, not a silence

2026-08-07 10:30:27 -05:00

tests

test(engine): a runner for tests/, and a failing regression test for #129

2026-08-07 10:16:57 -05:00

tools

fix(build): close real local-build gaps found in a hands-on build/run audit

2026-08-15 17:54:30 -05:00

vendor/el-runtime/v1.0.0-20260501

feat(runtime): read-only accessors for the compiled identity, and use one

2026-08-09 13:45:37 -05:00

.gitattributes

chore(repo): suppress generated dist/ artifacts in diffs

2026-06-14 15:36:54 -05:00

.gitignore

docs(architecture): record the 2026-08-14 deep-night sessions

2026-08-15 19:39:50 -05:00

AGENTS.md

fix(build): close real local-build gaps found in a hands-on build/run audit

2026-08-15 17:54:30 -05:00

awareness.el

Merge remote-tracking branch 'refs/remotes/origin/main' into fix/mcp-wrapper-agentic-routing

2026-08-15 19:36:41 -05:00

chat.el

Merge pull request 'Tools + agentic loop on the OpenAI wire — plus two pre-existing bugs that silently break chat' (#122 ) from feat/soul-openai-tools-v2 into main

2026-08-15 18:55:24 +00:00

Dockerfile

fix(ci/docker): pre-download artifacts before build, remove --secret

2026-06-18 14:04:03 -05:00

elp-input.el

fix: restore elb build — import paths, morphology deps, C master declarations header

2026-05-08 19:43:57 -05:00

entrypoint.sh

fix(reliability): engram-connection

2026-06-22 11:57:20 -05:00

HANDOFF-engram-write-corruption.md

Add Phase 0 live-runtime findings to engram write-corruption handoff

2026-06-08 16:25:12 -05:00

imprint.el

fix(reliability): state-management — document and partially fix concurrent state races

2026-06-22 12:12:58 -05:00

manifest.el

make soul identity configurable via env, remove hardcoded references

2026-05-02 23:00:35 -05:00

MEMORY_RECALL_BUG.md

Merge PR #14 : feat(soul): MCP connectors — /api/connectors proxy + per-connector auto-approve

2026-06-15 11:37:34 -05:00

memory.el

feat(soul): memories form connections when written

2026-08-09 11:00:04 -05:00

neuron-api.el

Merge remote-tracking branch 'origin/pr/149' into HEAD

2026-08-15 18:29:47 -05:00

persist.el

feat(soul): write-through to the persistence owner — memories survive restart (#117 )

2026-08-07 12:47:31 -05:00

PORT-NOTES.md

feat(engine): tools + agentic loop on the OpenAI wire, and two chat-breaking fixes found proving it

2026-08-06 16:41:18 -05:00

README.md

fix(build): close real local-build gaps found in a hands-on build/run audit

2026-08-15 17:54:30 -05:00

routes.el

fix(routes): /api/graph/edges must not write the canonical snapshot

2026-08-15 20:13:46 -05:00

safety.el

feat(soul): write-through to the persistence owner — memories survive restart (#117 )

2026-08-07 12:47:31 -05:00

sessions.el

feat(soul): write-through to the persistence owner — memories survive restart (#117 )

2026-08-07 12:47:31 -05:00

soul-talk.html

feat(soul): add sessions layer, MCP connectors, conversation continuity fix

2026-06-15 12:40:47 -05:00

soul.el

fix(soul): restore the soul_identity producer — the chat system prompt has been empty for three months (#137 )

2026-08-09 12:18:16 -05:00

stewardship.el

feat(soul): write-through to the persistence owner — memories survive restart (#117 )

2026-08-07 12:47:31 -05:00

studio.el

feat(runtime): read-only accessors for the compiled identity, and use one

2026-08-09 13:45:37 -05:00

README.md

neuron

The canonical CGI substrate: the soul (the running agent), the engram (its memory graph), and the MCP proxy/wrapper that expose it. See AGENTS.md for detail, including the audit-verified local build/regenerate recipe and known local-build gotchas.

Quick local build

# 1. dist/soul.c must match current .el sources — this refuses otherwise:
bash tools/build-soul-from-dist.sh dist/neuron

# 2. If it refuses (stale amalgam), regenerate first — see AGENTS.md's
#    "Build / regenerate dist/soul.c" section for the full, gotcha-laden recipe.

For a full local dev stack (soul + engram + mcp-wrapper + mcp-proxy, wired into Claude Code) see neuron-dev-setup/README.md instead — this repo alone only builds the soul.

Code vs. Artifact

Authored source: *.el + *.elh at the repo root plus cli/, council/, connectd/, mcp-proxy/, mcp-wrapper/ — edit here.
Artifacts (do not hand-edit): dist/soul.c (generated single-TU amalgam — regenerate via the recipe in AGENTS.md, then tools/soulc-stamp.sh --write) and the dist/neuron binary it compiles to.
Release: git tag neuron-vX.Y.Z on this repo. No releases/ folders.

See org policy: docs/CODE-VS-ARTIFACT.md.