fix(soul): restore the soul_identity producer — the chat system prompt has been empty for three months (#137)

Five sites in chat.el read state_get("soul_identity") and splice the result into
the system prompt, beside the voice, security and capability rules:

  chat.el:737, 1745, 2620, 3425, 3480

Nothing has written that key since b163fa6. The producer was added 2026-05-02 in
601e0fe and deleted by the awareness refactor days later. Every chat turn since has
built its system prompt with an EMPTY identity section, and nothing reported it.

Found by the #132 state-key gate, which treats a read with no producer as a build
error rather than a silence. That is the entire argument for that gate.

RESTORED VERBATIM, NOT IMPROVED. soul_identity is an env-configurable persona LINE.
It is not soul_identity_context — the graph-derived
[INTELLECTUAL-DNA]/[VALUES]/[MEMORY-PHILOSOPHY] block written at soul.el:184.
Repointing the five reads at that block would have substituted different content and
called it a repair. Whether the chat prompt should ALSO carry the graph-derived block
is a real question and a separate one; it is not smuggled in here.

Verified by the gate that found it: dead reads 6 -> 1, and it now reports the
chat.el baseline entry as STALE — 'entries that no longer match anything; delete
them'. The remaining one is studio.el's soul_principal, untouched by this change.

Rung: BUILT, gate-verified, boots. NOT end-to-end chat-verified — proving the
prompt now carries the line needs a live provider call, which I have not run.

Refs #137, #132

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>

.gitea/workflows/ci.yaml

@@ -34,12 +34,12 @@ jobs:
       - name: Install build dependencies
         run: |
           apt-get update -qq
-          apt-get install -y gcc libcurl4-openssl-dev apt-transport-https ca-certificates
+          apt-get install -y gcc curl libcurl4-openssl-dev apt-transport-https ca-certificates
           echo "deb [trusted=yes] https://packages.cloud.google.com/apt cloud-sdk main" \
             > /etc/apt/sources.list.d/google-cloud-sdk.list
           apt-get update -qq && apt-get install -y google-cloud-cli
 
-      - name: Download El runtime from Artifact Registry
+      - name: Authenticate to GCP + stage PINNED El runtime
         env:
           GCP_SA_KEY: ${{ secrets.GCP_SA_KEY }}
         run: |
@@ -47,41 +47,31 @@ jobs:
           gcloud auth activate-service-account --key-file=/tmp/gcp-key.json
           gcloud config set project neuron-785695
 
+          # PINNED RUNTIME — do NOT pull "latest" from Artifact Registry.
+          # The ship-soul calls engram_prune_telemetry (awareness.el sync/heartbeat
+          # self-review). The latest published el-runtime-c no longer defines that
+          # symbol, so an unpinned build fails to LINK — which is exactly how a
+          # broken/handlerless soul reached prod before. Compile against the
+          # vendored release runtime v1.0.0-20260501: the exact runtime the merged
+          # ship-soul was verified against (verify-soul-contract GATE PASS +
+          # genesis boot survives + full safety-contact response). It is committed
+          # under vendor/ so the soul build is fully reproducible and never depends
+          # on a moving AR "latest".
           rm -rf /opt/el/runtime
           mkdir -p /opt/el/runtime
+          cp vendor/el-runtime/v1.0.0-20260501/el_runtime.c /opt/el/runtime/el_runtime.c
+          cp vendor/el-runtime/v1.0.0-20260501/el_runtime.h /opt/el/runtime/el_runtime.h
+          echo "El runtime PINNED to v1.0.0-20260501: $(ls /opt/el/runtime/)"
 
-          # Get latest version of each runtime package (elc/elb not needed — we compile
-          # dist/soul.c directly; running elb on Linux OOM-kills the runner, and we
-          # always use the repo's pre-built soul.c anyway).
-          get_latest() {
-            gcloud artifacts versions list \
-              --repository=foundation-prod \
-              --location=us-central1 \
-              --project=neuron-785695 \
-              --package="$1" \
-              --sort-by="~createTime" \
-              --limit=1 \
-              --format="value(name)" 2>/dev/null | awk -F/ '{print $NF}'
-          }
-
-          RC_VER=$(get_latest el-runtime-c)
-          RH_VER=$(get_latest el-runtime-h)
-
-          echo "Downloading runtime@${RC_VER}"
-
-          gcloud artifacts generic download \
-            --repository=foundation-prod --location=us-central1 --project=neuron-785695 \
-            --package=el-runtime-c --version="${RC_VER}" \
-            --destination=/opt/el/runtime/
-
-          gcloud artifacts generic download \
-            --repository=foundation-prod --location=us-central1 --project=neuron-785695 \
-            --package=el-runtime-h --version="${RH_VER}" \
-            --destination=/opt/el/runtime/
-
-          mv /opt/el/runtime/el_runtime.c* /opt/el/runtime/el_runtime.c 2>/dev/null || true
-          mv /opt/el/runtime/el_runtime.h* /opt/el/runtime/el_runtime.h 2>/dev/null || true
-          echo "El runtime ready: $(ls /opt/el/runtime/)"
+      # neuron#133: CI compiles dist/soul.c, NOT the .el sources. On 2026-08-07 a
+      # build off main would have shipped an engine with none of five merged fixes,
+      # including a P0 safety fix, while main's source read as correct. The runner
+      # cannot regenerate the amalgam (elc needs 24GB+ virtual memory), but it can
+      # refuse to compile a stale one. Fails loudly with the recipe in the message.
+      - name: Verify dist/soul.c matches the sources
+        run: |
+          chmod +x tools/soulc-stamp.sh
+          ./tools/soulc-stamp.sh --check
 
       - name: Build neuron soul binary
         run: |
@@ -94,19 +84,37 @@ jobs:
           # entirely: elb on Linux would OOM the runner (elc uses 24GB+ virtual memory
           # on a 16GB host) and we always restore from the repo's soul.c anyway.
           mkdir -p dist
-          cc -O2 -DHAVE_CURL \
+          # -rdynamic: the el runtime resolves the HTTP request handler (and the
+          # tool handlers) by NAME via dlsym(RTLD_DEFAULT, "handle_request").
+          # macOS exports these symbols freely, but glibc/Linux only makes symbols
+          # visible to dlsym if they are in the dynamic symbol table — so without
+          # -rdynamic the stripped Linux binary boots but returns "el-runtime: no
+          # http handler registered" for EVERY route (i.e. a soul that serves
+          # nothing). Same reason the Windows build links -Wl,--export-all-symbols.
+          cc -O2 -DHAVE_CURL -rdynamic \
             -I$RUNTIME \
             dist/soul.c \
             $RUNTIME/el_runtime.c \
             -lssl -lcrypto -lcurl -lpthread -lm \
             -o dist/neuron
 
-          # Strip debug symbols and non-essential symbol table entries.
-          # -s removes the symbol table + relocation info (max size reduction).
-          # Keeps the binary functional; debuggability is preserved via source + CI logs.
+          # -s strips .symtab + debug for size. .dynsym (which -rdynamic populated
+          # with the dlsym-resolved handlers) is preserved, so the handler still
+          # resolves after stripping.
           strip -s dist/neuron
           ls -lh dist/neuron
 
+      - name: Soul contract gate (HARD BLOCK — no destructive/stale soul publishes)
+        run: |
+          # Boots dist/neuron on a throwaway port with a throwaway HOME/engram/cgi
+          # (never touches ~/.neuron or any live service) and fails the build if any
+          # app-contract route is unanswered (PRESENCE) or any engram write route
+          # hard-deletes instead of tombstoning/superseding (IMMUTABILITY). Non-zero
+          # here blocks Publish -> Artifact Registry -> GKE deploy, so a stale or
+          # memory-destroying soul can never reach prod.
+          chmod +x dist/neuron scripts/verify-soul-contract.sh
+          bash scripts/verify-soul-contract.sh dist/neuron 7796
+
       - name: Smoke test
         run: |
           file dist/neuron

awareness.el

@@ -30,74 +30,6 @@ fn idle_reset() -> Void {
 // read decide where telemetry goes. The in-process write remains only as a
 // last resort when the HTTP POST itself fails, and is tagged ise-fallback-local
 // so misrouting is visible in the stream instead of silent.
-// hebb_consolidate — push self-formed associations to the durable store.
-//
-// WHY THIS EXISTS (2026-08-07 self-review, measured on the live system).
-// Yesterday's eligibility-trace fix made Hebbian learning work: hebb_max
-// 0.000799 -> 0.4725, and 1,198 hebbian-associate edges formed in 23h48m.
-// A census this morning found all 1,198 of them living in this process's RAM
-// and nowhere else:
-//
-//   soul daemon in-process graph:   42,426 edges, 1,198 hebbian
-//   engram server (:8742, durable): 41,213 edges,    49 hebbian
-//
-// The soul pulls from the server every 10 min (GET /api/sync) and never
-// pushes. It also cannot save its own snapshot: soul.el only sets
-// soul_snapshot_path inside `if is_genesis && safe_to_seed`, and safe_to_seed
-// is unconditionally false when ENGRAM_URL is set — which it is, in the
-// launchd plist — because the HTTP server owns persistence and a soul writing
-// snapshot.json would clobber it. That guard is right. So mem_save() below has
-// literally never run, and this daemon (the ONLY process doing idle cognition,
-// therefore where essentially all co-activation happens) was throwing away
-// every association it learned, every restart, silently.
-//
-// The fix is not to let the soul write the file. It is to make consolidation a
-// message: hand each newly-formed edge to the durable store over the API the
-// server already exposes. Fast volatile store learns online; slow durable store
-// keeps what cleared the threshold. Only edges past ENGRAM_HEBB_LINK_MIN are
-// ever queued, so what crosses the boundary already earned it.
-//
-// Failure is non-fatal by construction: a drained entry that fails to POST is
-// gone, and that is fine — a real association re-forms from live co-activation.
-// The counts go into the heartbeat (hebb_wb_*) so a consolidation path that has
-// stopped delivering is visible in the stream rather than in a later autopsy.
-fn hebb_consolidate() -> Int {
-    let batch: String = engram_hebb_drain_json(64)
-    if str_eq(batch, "") { return 0 }
-    if str_eq(batch, "[]") { return 0 }
-    let n: Int = json_array_len(batch)
-    if n == 0 { return 0 }
-    let url_env: String = env("SOUL_ISE_URL")
-    let url_state: String = if str_eq(url_env, "") { state_get("soul_engram_url") } else { url_env }
-    let engram_url: String = if str_eq(url_state, "") { "http://localhost:8742" } else { url_state }
-    // ONE request for the whole batch, not one per edge. The server's
-    // persist_canonical() writes the full 60MB snapshot on every durable
-    // write, so per-edge POSTs would cost ~840MB of disk per heartbeat to
-    // persist ~14 associations. /api/edges/batch connects them all and
-    // snapshots once. The drain payload is already the right shape; it only
-    // needs an envelope: the drain already emits the relation per entry.
-    //
-    // _auth is REQUIRED and its absence is silent. check_auth_ok() in server.el
-    // exempts GET and /api/neuron/state-events (which is why ise_post works
-    // without a key) but gates every other mutation on "_auth" in the BODY —
-    // http_serve does not surface request headers, so there is no Bearer path.
-    // A batch posted without it comes back {"error":"unauthorized"}, which is a
-    // non-empty response: the naive `if resp == "" return 0` check would read
-    // that as success and report edges delivered that were in fact refused,
-    // after the drain had already destroyed them. Hence both the key and the
-    // accepted-count check below. Fall back to env when the state key is empty
-    // — never let a corruptible state read decide whether learning persists.
-    let key_state: String = state_get("soul_engram_api_key")
-    let api_key: String = if str_eq(key_state, "") { env("ENGRAM_API_KEY") } else { key_state }
-    let auth_part: String = if str_eq(api_key, "") { "" } else { ",\"_auth\":\"" + api_key + "\"" }
-    let body: String = "{\"edges\":" + batch + auth_part + "}"
-    let resp: String = http_post_json(engram_url + "/api/edges/batch", body)
-    if str_eq(resp, "") { return 0 }
-    let acc: String = json_get(resp, "accepted")
-    if str_eq(acc, "") { return 0 }
-    return str_to_int(acc)
-}
-
 fn ise_post(content: String) -> Void {
     let ise_url: String = env("SOUL_ISE_URL")
     let state_url: String = if str_eq(ise_url, "") { state_get("soul_engram_url") } else { ise_url }
@@ -122,21 +54,6 @@ fn ise_post(content: String) -> Void {
         let fail_raw: String = state_get("soul.ise_fail_count")
         let fail_n: Int = if str_eq(fail_raw, "") { 0 } else { str_to_int(fail_raw) }
         state_set("soul.ise_fail_count", int_to_str(fail_n + 1))
-        // el_from_float on a LITERAL is correct and is NOT the double-wrap bug
-        // (checked and dismissed 2026-08-02 self-review — recording the result
-        // so this call site is not "fixed" again by the next reader).
-        // The compiler treats el_from_float as the boxing intrinsic: both
-        // `el_from_float(0.3)` and a bare `0.3` emit exactly one
-        // el_from_float(0.3) in dist/awareness.c. Verified byte-identical
-        // codegen either way.
-        // The real bug fixed in server.el on 2026-08-01 was different: there
-        // the arguments came from json_get_float(), i.e. values ALREADY boxed
-        // as el_val_t. Wrapping THOSE a second time reinterprets the boxed
-        // bits as a raw double, fails engram_decode_score's range check, and
-        // silently clamps to defaults.
-        // The sweep criterion is therefore "el_from_float applied to an
-        // already-boxed expression", never "el_from_float applied to a
-        // literal". Grepping for the call name alone produces false positives.
         let discard: String = engram_node_full(
             content, "InternalStateEvent", "state-event",
             el_from_float(0.3), el_from_float(0.3), el_from_float(0.8),
@@ -382,89 +299,8 @@ fn emit_heartbeat() -> Void {
     // here so the stuck-term failure is visible in the heartbeat stream too.
     let hb_ats_raw: String = state_get("soul.auto_term_streak")
     let hb_ats: Int = if str_eq(hb_ats_raw, "") { 0 } else { str_to_int(hb_ats_raw) }
-    // auto_term_empty_streak (2026-08-06): consecutive scans producing NO auto
-    // term. Split out because str_eq("","") made the two failures indist-
-    // inguishable — see the comment at the streak computation in
-    // proactive_curiosity. Nonzero and climbing = extractor broken, not stuck.
-    let hb_ate_raw: String = state_get("soul.auto_term_empty_streak")
-    let hb_ate: Int = if str_eq(hb_ate_raw, "") { 0 } else { str_to_int(hb_ate_raw) }
-    // Hebbian eligibility gauges (2026-08-06 self-review). The graph learned
-    // ZERO structure in its first 23h of uptime: hebb_max 0.000799 against a
-    // 0.15 consolidation threshold, hebbian-associate edges 0, and the
-    // awareness loop calls engram_connect nowhere — so Hebbian consolidation
-    // is the only self-structuring path there is, and it was inert.
-    //   hebb_warm — nodes with a live eligibility trace but NOT co-resident in
-    //               WM: exactly the population the old simultaneity rule threw
-    //               away. 0 forever ⇒ traces never arm and this bought nothing.
-    //   hebb_max  — strongest single association. The number that has to move.
-    //   hebb_links— consolidated edges. The outcome that has to become nonzero.
-    let hebb_warm_raw: String = json_get(act_stats, "hebb_warm")
-    let hebb_warm: String = if str_eq(hebb_warm_raw, "") { "-1" } else { hebb_warm_raw }
-    let hebb_max_raw: String = json_get(act_stats, "hebb_max")
-    let hebb_max: String = if str_eq(hebb_max_raw, "") { "-1" } else { hebb_max_raw }
-    let hebb_links_raw: String = json_get(act_stats, "hebb_links")
-    let hebb_links: String = if str_eq(hebb_links_raw, "") { "-1" } else { hebb_links_raw }
-    // Candidate-table gauges (2026-08-10 self-review). el_runtime.c COMPUTES
-    // hebb_cands/hebb_cand_max/hebb_mass/hebb_edges and emits them from
-    // engram_metrics_json — and this function dropped all four on the floor.
-    // Nineteen keys crossed the C boundary; fourteen reached the ISE stream.
-    // The two that mattered most are exactly the pair the runtime added to
-    // answer the question the 08-06 review had to instrument for:
-    //   hebb_cands    — associations currently being tracked toward
-    //                   consolidation. 0 ⇒ nothing co-activates at all.
-    //   hebb_cand_max — how close the leading candidate is to
-    //                   ENGRAM_HEBB_LINK_MIN (0.15). Sustained just-below ⇒
-    //                   the THRESHOLD is the bottleneck, not the event rate.
-    // Without both, "hebb_links stopped climbing" is undiagnosable from the
-    // durable record: nothing-co-activates and threshold-too-high look
-    // identical. An instrument that is computed but not plumbed to durable
-    // storage is not an instrument — it is a local variable.
-    //   hebb_mass     — Σ hebb across edges; the runaway detector against the
-    //                   ENGRAM_HEBB_NODE_BUDGET homeostatic cap.
-    //   hebb_edges    — total potentiated edges (hebb > MIN), the denominator
-    //                   hebb_max is the max of.
-    let hebb_cands_raw: String = json_get(act_stats, "hebb_cands")
-    let hebb_cands: String = if str_eq(hebb_cands_raw, "") { "-1" } else { hebb_cands_raw }
-    let hebb_cmax_raw: String = json_get(act_stats, "hebb_cand_max")
-    let hebb_cmax: String = if str_eq(hebb_cmax_raw, "") { "-1" } else { hebb_cmax_raw }
-    let hebb_mass_raw: String = json_get(act_stats, "hebb_mass")
-    let hebb_mass: String = if str_eq(hebb_mass_raw, "") { "-1" } else { hebb_mass_raw }
-    let hebb_edges_raw: String = json_get(act_stats, "hebb_edges")
-    let hebb_edges: String = if str_eq(hebb_edges_raw, "") { "-1" } else { hebb_edges_raw }
-    // Consolidation write-back gauges (2026-08-07 self-review). hebb_links
-    // counts what this process LEARNED; these three count what SURVIVES it.
-    // The distinction is the whole finding: 1,198 links formed, 0 persisted,
-    // because the learner is not the persistence owner (see hebb_consolidate).
-    //   wb_pending — queued, not yet handed over. Climbing ⇒ writer is down.
-    //   wb_drained — cumulative popped for delivery. Flat while hebb_links
-    //                climbs ⇒ the drain is not being called at all.
-    //   wb_dropped — lost to a full queue. Must stay 0; nonzero means the
-    //                durable store has been unreachable long enough to matter.
-    //   wb_sent    — POSTs the durable store actually accepted this beat.
-    let wb_pend_raw: String = json_get(act_stats, "hebb_wb_pending")
-    let wb_pend: String = if str_eq(wb_pend_raw, "") { "-1" } else { wb_pend_raw }
-    let wb_drain_raw: String = json_get(act_stats, "hebb_wb_drained")
-    let wb_drain: String = if str_eq(wb_drain_raw, "") { "-1" } else { wb_drain_raw }
-    let wb_drop_raw: String = json_get(act_stats, "hebb_wb_dropped")
-    let wb_drop: String = if str_eq(wb_drop_raw, "") { "-1" } else { wb_drop_raw }
-    let wb_sent_raw: String = state_get("soul.hebb_wb_sent")
-    let wb_sent: String = if str_eq(wb_sent_raw, "") { "0" } else { wb_sent_raw }
-    // dup_wm_global (2026-08-06): redundant WM residents that arrived via the
-    // carry-over path, which Pass 3½ structurally could not see. Confirmed live
-    // by a census that caught two byte-identical copies of one 3,193-char
-    // document both holding slots.
-    let dup_wm_g_raw: String = json_get(act_stats, "dup_wm_global")
-    let dup_wm_g: String = if str_eq(dup_wm_g_raw, "") { "-1" } else { dup_wm_g_raw }
     let act_brk_raw: String = json_get(act_stats, "embed_breaker_open")
     let act_brk: String = if str_eq(act_brk_raw, "") { "-1" } else { act_brk_raw }
-    // embed_consec_fail (2026-08-10 self-review): also computed by the C side
-    // and also dropped here. embed_breaker_open is the LAGGING indicator — it
-    // only goes 1 after ENGRAM_EMBED_BREAKER_LIMIT consecutive failures, by
-    // which point semantic activation has already degraded to pure lexical
-    // for the whole cooldown. consec_fail is the leading edge of the same
-    // event and costs nothing to carry.
-    let emb_cf_raw: String = json_get(act_stats, "embed_consec_fail")
-    let emb_cf: String = if str_eq(emb_cf_raw, "") { "-1" } else { emb_cf_raw }
     // ctx_cos (2026-07-29 self-review): cos(query, context centroid) at the
     // last activate call — the drift gauge for the new context-centroid
     // scoring. ~1.0 aligned; low at domain-rotation boundaries is healthy;
@@ -472,79 +308,7 @@ fn emit_heartbeat() -> Void {
     // down) and semantic continuity is silently absent.
     let ctx_cos_raw: String = json_get(act_stats, "ctx_cos")
     let ctx_cos: String = if str_eq(ctx_cos_raw, "") { "-2" } else { ctx_cos_raw }
-    // Redundancy suppression gauges (2026-08-05 self-review). A content-hash
-    // census found 1,858 redundant copies — 44.9% of the non-ISE graph, from a
-    // June id-scheme migration. They embed identically, so they were taking
-    // 40.2% of semantic seed slots (measured: 4.78 distinct seeds of 8).
-    //   dup_seeds — redundant copies denied a seed slot, cumulative. A healthy
-    //               nonzero rate means the suppressor is doing real work; a
-    //               sustained drop toward 0 means the duplicates were finally
-    //               merged out of the graph (the repair this defends against).
-    //   dup_wm    — duplicate WM candidates evicted before the capacity cap.
-    // Cumulative like wm_evicted/breakthroughs; diff across heartbeats for rate.
-    let dup_seeds_raw: String = json_get(act_stats, "dup_seeds")
-    let dup_seeds: String = if str_eq(dup_seeds_raw, "") { "-1" } else { dup_seeds_raw }
-    let dup_wm_raw: String = json_get(act_stats, "dup_wm")
-    let dup_wm: String = if str_eq(dup_wm_raw, "") { "-1" } else { dup_wm_raw }
-    // txt_damaged (2026-08-08 self-review): nodes created THIS process whose
-    // content carries the character-loss signature (see eg_text_loss_signature
-    // in el_runtime.c). Today's review found the JSON parser had been replacing
-    // every \uXXXX escape with a literal '?' for at least two months — 76% of
-    // non-telemetry nodes damaged, including the self root and every values
-    // node — and nothing caught it, because every gauge here reported whether
-    // the machinery was RUNNING and none reported whether the text it carried
-    // was INTACT. The parser is fixed; this is the standing regression signal.
-    // Healthy state is a flat 0. Any climb means a write path is mangling text
-    // again. The full store census is GET /api/text-health (too expensive for
-    // a 60s beat); this is the cheap flow counter that belongs on every beat.
-    let txt_dmg_raw: String = json_get(act_stats, "txt_damaged")
-    let txt_dmg: String = if str_eq(txt_dmg_raw, "") { "-1" } else { txt_dmg_raw }
-    // ── Corpus damage STOCK, not just flow (2026-08-10 self-review) ────────
-    // txt_damaged above is a FLOW gauge: nodes damaged by a write in THIS
-    // process. The 08-08 review fixed the parser, watched that flow fall to
-    // 0, and recorded the defect as closed. It was not closed. Today's census
-    // on the live store: scanned 4100, damaged 2781 — 67.8% of the corpus is
-    // STILL carrying the character loss, including the self root and every
-    // values node ("Value ? Constraints as Freedom"). The parser stopped
-    // producing new damage; nothing ever repaired the old.
-    //
-    // That is the 08-08 lesson recursing one level up. 08-08 said "instrument
-    // the payload, not just the machinery" — and then instrumented the payload
-    // RATE and not the payload STOCK. A flow gauge reads 0 both when the
-    // corpus is clean and when it is uniformly damaged but quiescent. Those
-    // are opposite states and the beat could not tell them apart.
-    //
-    // Cost: GET /api/text-health scans the whole store, too expensive for a
-    // 60s beat (which is why 08-08 left it off). So sample it on a countdown
-    // and CARRY the last reading on every beat, with its age. A stale-but-
-    // present stock number beats an absent one; damaged_age_ms makes the
-    // staleness explicit rather than implied. No modulo/multiply — both
-    // operators are broken in this compiler (see the note at line ~160).
-    let tc_raw: String = state_get("soul.txt_census_countdown")
-    let tc_n: Int = if str_eq(tc_raw, "") { 0 } else { str_to_int(tc_raw) }
-    if tc_n <= 0 {
-        let th_resp: String = http_get(hb_engram_url + "/api/text-health")
-        let th_pct: String = json_get(th_resp, "damaged_pct")
-        if !str_eq(th_pct, "") {
-            state_set("soul.txt_damaged_pct", th_pct)
-            state_set("soul.txt_damaged_n", json_get(th_resp, "damaged"))
-            state_set("soul.txt_scanned_n", json_get(th_resp, "scanned"))
-            state_set("soul.txt_census_ts", int_to_str(ts))
-        }
-        // 30 beats ≈ 30 min at the 60s cadence. Reset even on a failed census
-        // so an unreachable route cannot turn this into a per-beat full scan.
-        state_set("soul.txt_census_countdown", "30")
-    }
-    if tc_n > 0 { state_set("soul.txt_census_countdown", int_to_str(tc_n - 1)) }
-    let dmg_pct_raw: String = state_get("soul.txt_damaged_pct")
-    let dmg_pct: String = if str_eq(dmg_pct_raw, "") { "-1" } else { dmg_pct_raw }
-    let dmg_n_raw: String = state_get("soul.txt_damaged_n")
-    let dmg_n: String = if str_eq(dmg_n_raw, "") { "-1" } else { dmg_n_raw }
-    let dmg_scan_raw: String = state_get("soul.txt_scanned_n")
-    let dmg_scan: String = if str_eq(dmg_scan_raw, "") { "-1" } else { dmg_scan_raw }
-    let dmg_ts_raw: String = state_get("soul.txt_census_ts")
-    let dmg_age: Int = if str_eq(dmg_ts_raw, "") { 0 - 1 } else { ts - str_to_int(dmg_ts_raw) }
-    let payload: String = "{\"event\":\"heartbeat\",\"pulse\":" + pulse + ",\"tick\":" + pulse + ",\"boot\":" + boot + ",\"idle\":" + idle + ",\"idle_ms\":" + int_to_str(idle_ms) + ",\"node_count\":" + int_to_str(nc) + ",\"edge_count\":" + int_to_str(ec) + ",\"node_delta\":" + int_to_str(node_delta) + ",\"edge_delta\":" + int_to_str(edge_delta) + ",\"wm_active\":" + int_to_str(wmc) + ",\"wm_delta\":" + int_to_str(wm_delta) + ",\"wm_saturated\":" + int_to_str(wm_sat) + ",\"wm_top0_streak\":" + int_to_str(t0streak) + ",\"wm_churn\":" + int_to_str(wm_churn) + ",\"wm_top0_wm\":" + wm_top0_wm + ",\"sync_added_total\":" + sat_str + ",\"sync_age_ms\":" + int_to_str(sync_age) + ",\"wm_avg_weight\":" + wm_avg_str + ",\"wm_top\":" + wm_top + ",\"ts\":" + int_to_str(ts) + ",\"uptime_ms\":" + int_to_str(up_ms) + ",\"uptime\":\"" + up_human + "\",\"embed_ok\":" + int_to_str(emb_ok) + ",\"embed_backfilled\":" + bf_done + ",\"embed_count\":" + bf_total + ",\"embed_eligible\":" + embed_elig + ",\"wm_evicted\":" + act_evict + ",\"wm_evicted_delta\":" + int_to_str(evict_delta) + ",\"breakthroughs\":" + act_bt + ",\"breakthroughs_delta\":" + int_to_str(bt_delta) + ",\"auto_term_streak\":" + int_to_str(hb_ats) + ",\"auto_term_empty_streak\":" + int_to_str(hb_ate) + ",\"embed_breaker_open\":" + act_brk + ",\"ctx_cos\":" + ctx_cos + ",\"dup_seeds\":" + dup_seeds + ",\"dup_wm\":" + dup_wm + ",\"dup_wm_global\":" + dup_wm_g + ",\"hebb_warm\":" + hebb_warm + ",\"hebb_max\":" + hebb_max + ",\"hebb_links\":" + hebb_links + ",\"hebb_cands\":" + hebb_cands + ",\"hebb_cand_max\":" + hebb_cmax + ",\"hebb_mass\":" + hebb_mass + ",\"hebb_edges\":" + hebb_edges + ",\"embed_consec_fail\":" + emb_cf + ",\"txt_damaged_pct\":" + dmg_pct + ",\"txt_damaged_n\":" + dmg_n + ",\"txt_scanned_n\":" + dmg_scan + ",\"txt_census_age_ms\":" + int_to_str(dmg_age) + ",\"hebb_wb_pending\":" + wb_pend + ",\"hebb_wb_drained\":" + wb_drain + ",\"hebb_wb_dropped\":" + wb_drop + ",\"hebb_wb_sent\":" + wb_sent + ",\"ise_fail\":" + fail_str + ",\"txt_damaged\":" + txt_dmg + "}"
+    let payload: String = "{\"event\":\"heartbeat\",\"pulse\":" + pulse + ",\"tick\":" + pulse + ",\"boot\":" + boot + ",\"idle\":" + idle + ",\"idle_ms\":" + int_to_str(idle_ms) + ",\"node_count\":" + int_to_str(nc) + ",\"edge_count\":" + int_to_str(ec) + ",\"node_delta\":" + int_to_str(node_delta) + ",\"edge_delta\":" + int_to_str(edge_delta) + ",\"wm_active\":" + int_to_str(wmc) + ",\"wm_delta\":" + int_to_str(wm_delta) + ",\"wm_saturated\":" + int_to_str(wm_sat) + ",\"wm_top0_streak\":" + int_to_str(t0streak) + ",\"wm_churn\":" + int_to_str(wm_churn) + ",\"wm_top0_wm\":" + wm_top0_wm + ",\"sync_added_total\":" + sat_str + ",\"sync_age_ms\":" + int_to_str(sync_age) + ",\"wm_avg_weight\":" + wm_avg_str + ",\"wm_top\":" + wm_top + ",\"ts\":" + int_to_str(ts) + ",\"uptime_ms\":" + int_to_str(up_ms) + ",\"uptime\":\"" + up_human + "\",\"embed_ok\":" + int_to_str(emb_ok) + ",\"embed_backfilled\":" + bf_done + ",\"embed_count\":" + bf_total + ",\"embed_eligible\":" + embed_elig + ",\"wm_evicted\":" + act_evict + ",\"wm_evicted_delta\":" + int_to_str(evict_delta) + ",\"breakthroughs\":" + act_bt + ",\"breakthroughs_delta\":" + int_to_str(bt_delta) + ",\"auto_term_streak\":" + int_to_str(hb_ats) + ",\"embed_breaker_open\":" + act_brk + ",\"ctx_cos\":" + ctx_cos + ",\"ise_fail\":" + fail_str + "}"
     ise_post(payload)
 }
 
@@ -636,48 +400,6 @@ fn auto_term_try_slot(slot_type: String, slot_lbl: String) -> Void {
                 // carrying a quote character is not a topic word.
                 if str_contains(term, "\"") { state_set("_ats_gw", "1") }
                 if str_contains(term, "'")  { state_set("_ats_gw", "1") }
-                // TERM-SPECIFICITY GATE (2026-08-03 self-review): the three
-                // guards above are hand-curated lists, and every one of them
-                // was written REACTIVELY — after a flood was already observed
-                // in the ISE stream. A list can only ever contain the floods
-                // that already happened. Two were in flight, unfixed, while
-                // this review ran:
-                //     "<!--" → 252 nodes activated  (markdown comment opener:
-                //              4 chars, no quote, no colon — passes every
-                //              guard above)
-                //     "SELF" → 541 nodes activated  (the stopword list has
-                //              "Self" Title-case; str_eq is case-SENSITIVE,
-                //              so the uppercase token sails through)
-                // Replace reaction with measurement: engram_label_df(term)
-                // counts nodes whose label contains the term. Low-specificity
-                // tokens are corpus-frequent BY DEFINITION, so this catches
-                // the flood class PROSPECTIVELY and tracks the corpus as the
-                // world-ingestor changes what the store is made of.
-                // This is IDF — Spärck Jones (1972) named it "term
-                // specificity"; automatic stopword compilation from it is the
-                // textbook application.
-                //
-                // Threshold node_count/400 (floor 8), measured on this store
-                // (13,370 nodes → 33). Live df separates the classes by an
-                // order of magnitude: <!--:220, SELF:175, Context:53 rejected;
-                // Dual:12, Sparse:8, engram_goal_bias:1, Clin-JEPA:1 pass.
-                //
-                // This does NOT replace the stopword list — verified against
-                // all 86 listed terms, not assumed. It catches 13 (Will:306,
-                // Self:175, Over:116, Knowledge:112 …) and misses 73
-                // (Whose:0, Would:0, Could:0, This:9 …). Labels are terse
-                // titles, so English function words are genuinely RARE in
-                // them: low df, high noise. The gates cover disjoint failure
-                // modes — stopwords catch function words, df catches
-                // corpus-frequent markup/sentinel/genre tokens. Both required.
-                // Nested rather than max(): El `let` is single-assignment, so
-                // the floor is expressed as a second conjunct. Reject iff
-                // df > node_count/400 AND df > 8 — i.e. df > max(that, 8).
-                let df_max: Int = engram_node_count() / 400
-                let df_term: Int = engram_label_df(term)
-                if df_term > df_max {
-                    if df_term > 8 { state_set("_ats_gw", "1") }
-                }
                 // AUTO-TERM TABU (2026-07-25 self-review): finst-style
                 // inhibition-of-return (ACT-R declarative finsts: small
                 // marker pool, hard exclusion). The last 4 selected auto
@@ -827,25 +549,9 @@ fn proactive_curiosity() -> Bool {
     let prev_auto: String = state_get("soul.prev_auto_term")
     let atstreak_raw: String = state_get("soul.auto_term_streak")
     let atstreak_prev: Int = if str_eq(atstreak_raw, "") { 0 } else { str_to_int(atstreak_raw) }
-    // A streak of nothing is not a streak (2026-08-06 self-review).
-    // str_eq("", "") is true, so an auto-term extractor that kept FAILING
-    // reported a rising auto_term_streak — the same signal that means
-    // "fixated on one term" also meant "producing no term at all", which are
-    // opposite failures needing opposite responses. Observed live in the ISE
-    // stream as {"auto_term":"","auto_term_streak":3}. This is the same class
-    // of bug already fixed for wm_top0_streak; auto_term was missed then.
-    // Empty now reads 0, and the empty run is counted on its own axis so the
-    // extractor failing is visible rather than disguised as health.
-    let is_empty: Bool = str_eq(auto_term, "")
-    let atstreak: Int = if is_empty { 0 } else {
-        if str_eq(auto_term, prev_auto) { atstreak_prev + 1 } else { 1 }
-    }
-    let atempty_raw: String = state_get("soul.auto_term_empty_streak")
-    let atempty_prev: Int = if str_eq(atempty_raw, "") { 0 } else { str_to_int(atempty_raw) }
-    let atempty: Int = if is_empty { atempty_prev + 1 } else { 0 }
+    let atstreak: Int = if str_eq(auto_term, prev_auto) { atstreak_prev + 1 } else { 1 }
     state_set("soul.prev_auto_term", auto_term)
     state_set("soul.auto_term_streak", int_to_str(atstreak))
-    state_set("soul.auto_term_empty_streak", int_to_str(atempty))
     if !str_eq(auto_term, "") {
         state_set("soul.tabu_t3", state_get("soul.tabu_t2"))
         state_set("soul.tabu_t2", state_get("soul.tabu_t1"))
@@ -865,7 +571,6 @@ fn proactive_curiosity() -> Bool {
     let ise: String = "{\"event\":\"curiosity_scan\",\"seed\":\"" + curiosity_seed
         + "\",\"auto_term\":\"" + safe_auto
         + "\",\"auto_term_streak\":" + int_to_str(atstreak)
-        + ",\"auto_term_empty_streak\":" + int_to_str(atempty)
         + ",\"minute_block\":" + int_to_str(minute_block)
         + ",\"activated\":" + int_to_str(total_found)
         + ",\"wm_active\":" + int_to_str(wmc)
@@ -1152,15 +857,8 @@ fn awareness_run() -> Void {
             // still leaves no trace — that absence is itself the crash signal.)
             let sd_boot_raw: String = state_get("soul_boot_count")
             let sd_boot: String = if str_eq(sd_boot_raw, "") { "0" } else { sd_boot_raw }
-            // Final consolidation before exit. The periodic drain runs on the
-            // heartbeat (~8 min), so a clean shutdown between beats would take
-            // everything learned since the last one to the grave — the exact
-            // loss this whole path exists to stop, just at a smaller scale.
-            // Best-effort: if the durable store is already down we exit anyway.
-            let sd_wb: Int = hebb_consolidate()
             ise_post("{\"event\":\"shutdown\",\"boot\":" + sd_boot
                 + ",\"pulse\":" + int_to_str(pulse_count())
-                + ",\"hebb_wb_sent\":" + int_to_str(sd_wb)
                 + ",\"uptime_ms\":" + int_to_str(elapsed_ms())
                 + ",\"ts\":" + int_to_str(time_now()) + "}")
             println("[awareness] exiting")
@@ -1187,20 +885,33 @@ fn awareness_run() -> Void {
         let beat_elapsed: Int = now_ts - last_beat_ts
         let should_beat: Bool = beat_elapsed >= beat_ms
         if should_beat {
-            // Consolidate BEFORE the heartbeat so the gauges the heartbeat
-            // reports describe the state this beat actually left behind, not
-            // the state one beat stale. See hebb_consolidate for why a daemon
-            // that learns 1,198 associations a day was keeping none of them.
-            let wb_sent_n: Int = hebb_consolidate()
-            state_set("soul.hebb_wb_sent", int_to_str(wb_sent_n))
             emit_heartbeat()
             state_set("soul.last_beat_ts", int_to_str(now_ts))
             // Persist in-process Engram (sessions, memories, conversation nodes)
             // to local snapshot so they survive restarts.
+            // FILE MODE ONLY: "soul_snapshot_path" is set exclusively in the
+            // genesis+safe_to_seed branch of soul.el, and safe_to_seed is
+            // unconditionally false when ENGRAM_URL is set. In HTTP mode the
+            // owner persists; the soul must not (soul.el:571-573).
             let snap_path: String = state_get("soul_snapshot_path")
             if !str_eq(snap_path, "") {
                 mem_save(snap_path)
             }
+            // WRITE-THROUGH RETRY (neuron#117). The HTTP-mode counterpart of the
+            // save above: hand anything still spooled to the persistence owner.
+            //
+            // This is the retry arm of the whole design. Deltas that could not be
+            // pushed — owner down, owner restarting, transient refusal — stay on
+            // disk and are re-offered here every heartbeat until they land. It is
+            // also the catch-all for writes made by the awareness loop itself,
+            // which never passes through the HTTP handler's flush point.
+            //
+            // No-op with no HTTP call when the spool is empty or ENGRAM_URL is
+            // unset, so an idle soul in file mode pays nothing for this.
+            let wt_pushed: Int = wt_drain()
+            if wt_pushed < 0 {
+                ise_post("{\"event\":\"write_through_backlog\",\"ts\":" + int_to_str(now_ts) + "}")
+            }
         }
 
         // Curiosity scan: idle-gated AND wall-clock based. Only fires when the

chat.elh

@@ -1,4 +1,4 @@
-// auto-generated by elc --emit-header — do not edit
+// auto-generated by elc --emit-header - do not edit
 extern fn chat_default_model() -> String
 extern fn engram_numeric_valid(s: String) -> Bool
 extern fn parse_float_x100(s: String) -> Int
@@ -16,18 +16,33 @@ extern fn engram_nodes_merge(a: String, b: String) -> String
 extern fn id_in_seen(node_id: String, seen: String) -> Bool
 extern fn add_to_seen(seen: String, node_id: String) -> String
 extern fn engram_extract_ids(nodes_json: String) -> String
+extern fn affective_node_ts(node_json: String) -> Int
 extern fn engram_compile(intent: String) -> String
 extern fn distill_transcript(transcript: String) -> String
 extern fn json_safe(s: String) -> String
 extern fn current_engine_note(model: String) -> String
 extern fn bounded_persona_floor() -> String
+extern fn operator_identity_block() -> String
 extern fn build_system_prompt(ctx: String, chat_mode: Bool) -> String
 extern fn hist_append(hist: String, role: String, content: String) -> String
+extern fn conv_hist_key(session_id: String) -> String
+extern fn conv_hist_label(session_id: String) -> String
+extern fn is_utility_request(body: String, session_id: String) -> Bool
+extern fn provenance_scan_urls(arr: String, acc: String) -> String
+extern fn provenance_add_sources(block: String, btype: String, has_cit: Bool, cit_raw: String, acc: String) -> String
+extern fn provenance_names(tools_used: String) -> String
+extern fn text_join_sep(accumulated: String, incoming: String, after_interruption: Bool) -> String
+extern fn receipt_rule() -> String
+extern fn receipt_strip(s: String) -> String
+extern fn tool_receipt(tools_used: String, sources: String) -> String
 extern fn hist_trim(hist: String) -> String
 extern fn hist_trim_with_bell_guard(hist: String) -> String
 extern fn clean_llm_response(s: String) -> String
-extern fn conv_history_persist(hist: String) -> Void
-extern fn conv_history_load() -> String
+extern fn conv_history_persist(session_id: String, hist: String) -> Void
+extern fn conv_history_load(session_id: String) -> String
+extern fn conv_history_record(session_id: String, user_msg: String, assistant_msg: String, receipt: String) -> Void
+extern fn conv_history_block(session_id: String) -> String
+extern fn layered_generate(prompt: String, imprint_id: String, session_id: String) -> String
 extern fn session_preload_bullets(nodes: String, max_bullets: Int, snip_len: Int) -> String
 extern fn affective_context_prefix() -> String
 extern fn handle_chat(body: String) -> String
@@ -39,6 +54,8 @@ extern fn llm_wire_format() -> String
 extern fn json_escape(s: String) -> String
 extern fn openai_chat_complete(model: String, base_url: String, api_key: String, safe_sys: String, messages_json: String) -> String
 extern fn agentic_tools_literal() -> String
+extern fn web_search_tool_json() -> String
+extern fn strip_client_web_search(tools_inner: String) -> String
 extern fn agentic_tools_with_web() -> String
 extern fn connector_tools_json() -> String
 extern fn agentic_tools_all() -> String

dist/awareness.c

@@ -21,7 +21,6 @@ el_val_t mem_emit_state_event(el_val_t trigger, el_val_t kind, el_val_t content)
 el_val_t idle_count(void);
 el_val_t idle_inc(void);
 el_val_t idle_reset(void);
-el_val_t hebb_consolidate(void);
 el_val_t ise_post(el_val_t content);
 el_val_t elapsed_ms(void);
 el_val_t elapsed_human(void);
@@ -66,41 +65,10 @@ el_val_t idle_reset(void) {
   return 0;
 }
 
-el_val_t hebb_consolidate(void) {
-  el_val_t batch = engram_hebb_drain_json(64);
-  if (str_eq(batch, EL_STR(""))) {
-    return 0;
-  }
-  if (str_eq(batch, EL_STR("[]"))) {
-    return 0;
-  }
-  el_val_t n = json_array_len(batch);
-  if (n == 0) {
-    return 0;
-  }
-  el_val_t url_env = env(EL_STR("SOUL_ISE_URL"));
-  el_val_t url_state = ({ el_val_t _if_result_1 = 0; if (str_eq(url_env, EL_STR(""))) { _if_result_1 = (state_get(EL_STR("soul_engram_url"))); } else { _if_result_1 = (url_env); } _if_result_1; });
-  el_val_t engram_url = ({ el_val_t _if_result_2 = 0; if (str_eq(url_state, EL_STR(""))) { _if_result_2 = (EL_STR("http://localhost:8742")); } else { _if_result_2 = (url_state); } _if_result_2; });
-  el_val_t key_state = state_get(EL_STR("soul_engram_api_key"));
-  el_val_t api_key = ({ el_val_t _if_result_3 = 0; if (str_eq(key_state, EL_STR(""))) { _if_result_3 = (env(EL_STR("ENGRAM_API_KEY"))); } else { _if_result_3 = (key_state); } _if_result_3; });
-  el_val_t auth_part = ({ el_val_t _if_result_4 = 0; if (str_eq(api_key, EL_STR(""))) { _if_result_4 = (EL_STR("")); } else { _if_result_4 = (el_str_concat(el_str_concat(EL_STR(",\"_auth\":\""), api_key), EL_STR("\""))); } _if_result_4; });
-  el_val_t body = el_str_concat(el_str_concat(el_str_concat(EL_STR("{\"edges\":"), batch), auth_part), EL_STR("}"));
-  el_val_t resp = http_post_json(el_str_concat(engram_url, EL_STR("/api/edges/batch")), body);
-  if (str_eq(resp, EL_STR(""))) {
-    return 0;
-  }
-  el_val_t acc = json_get(resp, EL_STR("accepted"));
-  if (str_eq(acc, EL_STR(""))) {
-    return 0;
-  }
-  return str_to_int(acc);
-  return 0;
-}
-
 el_val_t ise_post(el_val_t content) {
   el_val_t ise_url = env(EL_STR("SOUL_ISE_URL"));
-  el_val_t state_url = ({ el_val_t _if_result_5 = 0; if (str_eq(ise_url, EL_STR(""))) { _if_result_5 = (state_get(EL_STR("soul_engram_url"))); } else { _if_result_5 = (ise_url); } _if_result_5; });
-  el_val_t engram_url = ({ el_val_t _if_result_6 = 0; if (str_eq(state_url, EL_STR(""))) { _if_result_6 = (EL_STR("http://localhost:8742")); } else { _if_result_6 = (state_url); } _if_result_6; });
+  el_val_t state_url = ({ el_val_t _if_result_1 = 0; if (str_eq(ise_url, EL_STR(""))) { _if_result_1 = (state_get(EL_STR("soul_engram_url"))); } else { _if_result_1 = (ise_url); } _if_result_1; });
+  el_val_t engram_url = ({ el_val_t _if_result_2 = 0; if (str_eq(state_url, EL_STR(""))) { _if_result_2 = (EL_STR("http://localhost:8742")); } else { _if_result_2 = (state_url); } _if_result_2; });
   el_val_t safe1 = str_replace(content, EL_STR("\\"), EL_STR("\\\\"));
   el_val_t safe2 = str_replace(safe1, EL_STR("\""), EL_STR("\\\""));
   el_val_t safe3 = str_replace(safe2, EL_STR("\n"), EL_STR("\\n"));
@@ -109,7 +77,7 @@ el_val_t ise_post(el_val_t content) {
   el_val_t resp = http_post_json(el_str_concat(engram_url, EL_STR("/api/neuron/state-events")), body);
   if (str_eq(resp, EL_STR(""))) {
     el_val_t fail_raw = state_get(EL_STR("soul.ise_fail_count"));
-    el_val_t fail_n = ({ el_val_t _if_result_7 = 0; if (str_eq(fail_raw, EL_STR(""))) { _if_result_7 = (0); } else { _if_result_7 = (str_to_int(fail_raw)); } _if_result_7; });
+    el_val_t fail_n = ({ el_val_t _if_result_3 = 0; if (str_eq(fail_raw, EL_STR(""))) { _if_result_3 = (0); } else { _if_result_3 = (str_to_int(fail_raw)); } _if_result_3; });
     state_set(EL_STR("soul.ise_fail_count"), int_to_str((fail_n + 1)));
     el_val_t discard = engram_node_full(content, EL_STR("InternalStateEvent"), EL_STR("state-event"), el_from_float(0.3), el_from_float(0.3), el_from_float(0.8), EL_STR("Episodic"), EL_STR("[\"internal-state\",\"InternalStateEvent\",\"ise-fallback-local\"]"));
     return EL_STR("");
@@ -162,11 +130,11 @@ el_val_t embed_ok(void) {
 el_val_t emit_heartbeat(void) {
   el_val_t pulse = int_to_str(pulse_count());
   el_val_t boot_raw = state_get(EL_STR("soul_boot_count"));
-  el_val_t boot = ({ el_val_t _if_result_8 = 0; if (str_eq(boot_raw, EL_STR(""))) { _if_result_8 = (EL_STR("0")); } else { _if_result_8 = (boot_raw); } _if_result_8; });
+  el_val_t boot = ({ el_val_t _if_result_4 = 0; if (str_eq(boot_raw, EL_STR(""))) { _if_result_4 = (EL_STR("0")); } else { _if_result_4 = (boot_raw); } _if_result_4; });
   el_val_t idle = int_to_str(idle_count());
   el_val_t ts = time_now();
   el_val_t last_act_raw = state_get(EL_STR("soul.last_activity_ts"));
-  el_val_t idle_ms = ({ el_val_t _if_result_9 = 0; if (str_eq(last_act_raw, EL_STR(""))) { _if_result_9 = ((0 - 1)); } else { _if_result_9 = ((ts - str_to_int(last_act_raw))); } _if_result_9; });
+  el_val_t idle_ms = ({ el_val_t _if_result_5 = 0; if (str_eq(last_act_raw, EL_STR(""))) { _if_result_5 = ((0 - 1)); } else { _if_result_5 = ((ts - str_to_int(last_act_raw))); } _if_result_5; });
   el_val_t nc = engram_node_count();
   el_val_t ec = engram_edge_count();
   el_val_t wmc = engram_wm_count();
@@ -177,36 +145,36 @@ el_val_t emit_heartbeat(void) {
   el_val_t up_human = elapsed_human();
   el_val_t emb_ok = embed_ok();
   el_val_t fail_raw = state_get(EL_STR("soul.ise_fail_count"));
-  el_val_t fail_str = ({ el_val_t _if_result_10 = 0; if (str_eq(fail_raw, EL_STR(""))) { _if_result_10 = (EL_STR("0")); } else { _if_result_10 = (fail_raw); } _if_result_10; });
+  el_val_t fail_str = ({ el_val_t _if_result_6 = 0; if (str_eq(fail_raw, EL_STR(""))) { _if_result_6 = (EL_STR("0")); } else { _if_result_6 = (fail_raw); } _if_result_6; });
   el_val_t sat_raw = state_get(EL_STR("soul.sync_added_total"));
-  el_val_t sat_str = ({ el_val_t _if_result_11 = 0; if (str_eq(sat_raw, EL_STR(""))) { _if_result_11 = (EL_STR("0")); } else { _if_result_11 = (sat_raw); } _if_result_11; });
+  el_val_t sat_str = ({ el_val_t _if_result_7 = 0; if (str_eq(sat_raw, EL_STR(""))) { _if_result_7 = (EL_STR("0")); } else { _if_result_7 = (sat_raw); } _if_result_7; });
   el_val_t prev_wm_raw = state_get(EL_STR("soul.prev_wm_active"));
-  el_val_t prev_wm = ({ el_val_t _if_result_12 = 0; if (str_eq(prev_wm_raw, EL_STR(""))) { _if_result_12 = (0); } else { _if_result_12 = (str_to_int(prev_wm_raw)); } _if_result_12; });
+  el_val_t prev_wm = ({ el_val_t _if_result_8 = 0; if (str_eq(prev_wm_raw, EL_STR(""))) { _if_result_8 = (0); } else { _if_result_8 = (str_to_int(prev_wm_raw)); } _if_result_8; });
   el_val_t wm_delta = (wmc - prev_wm);
   state_set(EL_STR("soul.prev_wm_active"), int_to_str(wmc));
   el_val_t prev_nc_raw = state_get(EL_STR("soul.prev_node_count"));
-  el_val_t prev_nc = ({ el_val_t _if_result_13 = 0; if (str_eq(prev_nc_raw, EL_STR(""))) { _if_result_13 = (nc); } else { _if_result_13 = (str_to_int(prev_nc_raw)); } _if_result_13; });
+  el_val_t prev_nc = ({ el_val_t _if_result_9 = 0; if (str_eq(prev_nc_raw, EL_STR(""))) { _if_result_9 = (nc); } else { _if_result_9 = (str_to_int(prev_nc_raw)); } _if_result_9; });
   el_val_t node_delta = (nc - prev_nc);
   state_set(EL_STR("soul.prev_node_count"), int_to_str(nc));
   el_val_t prev_ec_raw = state_get(EL_STR("soul.prev_edge_count"));
-  el_val_t prev_ec = ({ el_val_t _if_result_14 = 0; if (str_eq(prev_ec_raw, EL_STR(""))) { _if_result_14 = (ec); } else { _if_result_14 = (str_to_int(prev_ec_raw)); } _if_result_14; });
+  el_val_t prev_ec = ({ el_val_t _if_result_10 = 0; if (str_eq(prev_ec_raw, EL_STR(""))) { _if_result_10 = (ec); } else { _if_result_10 = (str_to_int(prev_ec_raw)); } _if_result_10; });
   el_val_t edge_delta = (ec - prev_ec);
   state_set(EL_STR("soul.prev_edge_count"), int_to_str(ec));
   el_val_t sync_ok_raw = state_get(EL_STR("soul.last_sync_ok_ts"));
-  el_val_t sync_age = ({ el_val_t _if_result_15 = 0; if (str_eq(sync_ok_raw, EL_STR(""))) { _if_result_15 = ((0 - 1)); } else { _if_result_15 = ((ts - str_to_int(sync_ok_raw))); } _if_result_15; });
+  el_val_t sync_age = ({ el_val_t _if_result_11 = 0; if (str_eq(sync_ok_raw, EL_STR(""))) { _if_result_11 = ((0 - 1)); } else { _if_result_11 = ((ts - str_to_int(sync_ok_raw))); } _if_result_11; });
   el_val_t hb_env_url = env(EL_STR("SOUL_ISE_URL"));
-  el_val_t hb_state_url = ({ el_val_t _if_result_16 = 0; if (str_eq(hb_env_url, EL_STR(""))) { _if_result_16 = (state_get(EL_STR("soul_engram_url"))); } else { _if_result_16 = (hb_env_url); } _if_result_16; });
-  el_val_t hb_engram_url = ({ el_val_t _if_result_17 = 0; if (str_eq(hb_state_url, EL_STR(""))) { _if_result_17 = (EL_STR("http://localhost:8742")); } else { _if_result_17 = (hb_state_url); } _if_result_17; });
+  el_val_t hb_state_url = ({ el_val_t _if_result_12 = 0; if (str_eq(hb_env_url, EL_STR(""))) { _if_result_12 = (state_get(EL_STR("soul_engram_url"))); } else { _if_result_12 = (hb_env_url); } _if_result_12; });
+  el_val_t hb_engram_url = ({ el_val_t _if_result_13 = 0; if (str_eq(hb_state_url, EL_STR(""))) { _if_result_13 = (EL_STR("http://localhost:8742")); } else { _if_result_13 = (hb_state_url); } _if_result_13; });
   el_val_t bf_resp = http_get(el_str_concat(hb_engram_url, EL_STR("/api/embed-backfill?n=32")));
   el_val_t bf_done_raw = json_get(bf_resp, EL_STR("embedded"));
-  el_val_t bf_done = ({ el_val_t _if_result_18 = 0; if (str_eq(bf_done_raw, EL_STR(""))) { _if_result_18 = (EL_STR("-1")); } else { _if_result_18 = (bf_done_raw); } _if_result_18; });
+  el_val_t bf_done = ({ el_val_t _if_result_14 = 0; if (str_eq(bf_done_raw, EL_STR(""))) { _if_result_14 = (EL_STR("-1")); } else { _if_result_14 = (bf_done_raw); } _if_result_14; });
   el_val_t bf_total_raw = json_get(bf_resp, EL_STR("embedded_count"));
-  el_val_t bf_total = ({ el_val_t _if_result_19 = 0; if (str_eq(bf_total_raw, EL_STR(""))) { _if_result_19 = (EL_STR("-1")); } else { _if_result_19 = (bf_total_raw); } _if_result_19; });
-  el_val_t wm_sat = ({ el_val_t _if_result_20 = 0; if ((wmc >= 24)) { _if_result_20 = (1); } else { _if_result_20 = (0); } _if_result_20; });
+  el_val_t bf_total = ({ el_val_t _if_result_15 = 0; if (str_eq(bf_total_raw, EL_STR(""))) { _if_result_15 = (EL_STR("-1")); } else { _if_result_15 = (bf_total_raw); } _if_result_15; });
+  el_val_t wm_sat = ({ el_val_t _if_result_16 = 0; if ((wmc >= 24)) { _if_result_16 = (1); } else { _if_result_16 = (0); } _if_result_16; });
   el_val_t prev_sat_raw = state_get(EL_STR("soul.prev_wm_saturated"));
-  el_val_t prev_sat = ({ el_val_t _if_result_21 = 0; if (str_eq(prev_sat_raw, EL_STR(""))) { _if_result_21 = (wm_sat); } else { _if_result_21 = (str_to_int(prev_sat_raw)); } _if_result_21; });
+  el_val_t prev_sat = ({ el_val_t _if_result_17 = 0; if (str_eq(prev_sat_raw, EL_STR(""))) { _if_result_17 = (wm_sat); } else { _if_result_17 = (str_to_int(prev_sat_raw)); } _if_result_17; });
   if (wm_sat != prev_sat) {
-    el_val_t sat_dir = ({ el_val_t _if_result_22 = 0; if ((wm_sat == 1)) { _if_result_22 = (EL_STR("onset")); } else { _if_result_22 = (EL_STR("release")); } _if_result_22; });
+    el_val_t sat_dir = ({ el_val_t _if_result_18 = 0; if ((wm_sat == 1)) { _if_result_18 = (EL_STR("onset")); } else { _if_result_18 = (EL_STR("release")); } _if_result_18; });
     ise_post(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(EL_STR("{\"event\":\"wm_saturation_transition\",\"direction\":\""), sat_dir), EL_STR("\",\"wm_active\":")), int_to_str(wmc)), EL_STR(",\"wm_top\":")), wm_top), EL_STR(",\"ts\":")), int_to_str(ts)), EL_STR("}")));
   }
   state_set(EL_STR("soul.prev_wm_saturated"), int_to_str(wm_sat));
@@ -214,8 +182,8 @@ el_val_t emit_heartbeat(void) {
   el_val_t wm_top0_id = json_get(wm_top0, EL_STR("id"));
   el_val_t prev_top0 = state_get(EL_STR("soul.prev_wm_top0"));
   el_val_t t0streak_raw = state_get(EL_STR("soul.wm_top0_streak"));
-  el_val_t t0streak_prev = ({ el_val_t _if_result_23 = 0; if (str_eq(t0streak_raw, EL_STR(""))) { _if_result_23 = (0); } else { _if_result_23 = (str_to_int(t0streak_raw)); } _if_result_23; });
-  el_val_t t0streak = ({ el_val_t _if_result_24 = 0; if (str_eq(wm_top0_id, EL_STR(""))) { _if_result_24 = (0); } else { _if_result_24 = (({ el_val_t _if_result_25 = 0; if (str_eq(wm_top0_id, prev_top0)) { _if_result_25 = ((t0streak_prev + 1)); } else { _if_result_25 = (1); } _if_result_25; })); } _if_result_24; });
+  el_val_t t0streak_prev = ({ el_val_t _if_result_19 = 0; if (str_eq(t0streak_raw, EL_STR(""))) { _if_result_19 = (0); } else { _if_result_19 = (str_to_int(t0streak_raw)); } _if_result_19; });
+  el_val_t t0streak = ({ el_val_t _if_result_20 = 0; if (str_eq(wm_top0_id, EL_STR(""))) { _if_result_20 = (0); } else { _if_result_20 = (({ el_val_t _if_result_21 = 0; if (str_eq(wm_top0_id, prev_top0)) { _if_result_21 = ((t0streak_prev + 1)); } else { _if_result_21 = (1); } _if_result_21; })); } _if_result_20; });
   state_set(EL_STR("soul.prev_wm_top0"), wm_top0_id);
   state_set(EL_STR("soul.wm_top0_streak"), int_to_str(t0streak));
   el_val_t ch_id1 = json_get(json_array_get(wm_top, 1), EL_STR("id"));
@@ -223,28 +191,28 @@ el_val_t emit_heartbeat(void) {
   el_val_t ch_id3 = json_get(json_array_get(wm_top, 3), EL_STR("id"));
   el_val_t ch_id4 = json_get(json_array_get(wm_top, 4), EL_STR("id"));
   el_val_t prev_top5 = state_get(EL_STR("soul.prev_wm_top5"));
-  el_val_t ch0 = ({ el_val_t _if_result_26 = 0; if (str_eq(wm_top0_id, EL_STR(""))) { _if_result_26 = (0); } else { _if_result_26 = (({ el_val_t _if_result_27 = 0; if (str_contains(prev_top5, wm_top0_id)) { _if_result_27 = (0); } else { _if_result_27 = (1); } _if_result_27; })); } _if_result_26; });
-  el_val_t ch1 = ({ el_val_t _if_result_28 = 0; if (str_eq(ch_id1, EL_STR(""))) { _if_result_28 = (0); } else { _if_result_28 = (({ el_val_t _if_result_29 = 0; if (str_contains(prev_top5, ch_id1)) { _if_result_29 = (0); } else { _if_result_29 = (1); } _if_result_29; })); } _if_result_28; });
-  el_val_t ch2 = ({ el_val_t _if_result_30 = 0; if (str_eq(ch_id2, EL_STR(""))) { _if_result_30 = (0); } else { _if_result_30 = (({ el_val_t _if_result_31 = 0; if (str_contains(prev_top5, ch_id2)) { _if_result_31 = (0); } else { _if_result_31 = (1); } _if_result_31; })); } _if_result_30; });
-  el_val_t ch3 = ({ el_val_t _if_result_32 = 0; if (str_eq(ch_id3, EL_STR(""))) { _if_result_32 = (0); } else { _if_result_32 = (({ el_val_t _if_result_33 = 0; if (str_contains(prev_top5, ch_id3)) { _if_result_33 = (0); } else { _if_result_33 = (1); } _if_result_33; })); } _if_result_32; });
-  el_val_t ch4 = ({ el_val_t _if_result_34 = 0; if (str_eq(ch_id4, EL_STR(""))) { _if_result_34 = (0); } else { _if_result_34 = (({ el_val_t _if_result_35 = 0; if (str_contains(prev_top5, ch_id4)) { _if_result_35 = (0); } else { _if_result_35 = (1); } _if_result_35; })); } _if_result_34; });
+  el_val_t ch0 = ({ el_val_t _if_result_22 = 0; if (str_eq(wm_top0_id, EL_STR(""))) { _if_result_22 = (0); } else { _if_result_22 = (({ el_val_t _if_result_23 = 0; if (str_contains(prev_top5, wm_top0_id)) { _if_result_23 = (0); } else { _if_result_23 = (1); } _if_result_23; })); } _if_result_22; });
+  el_val_t ch1 = ({ el_val_t _if_result_24 = 0; if (str_eq(ch_id1, EL_STR(""))) { _if_result_24 = (0); } else { _if_result_24 = (({ el_val_t _if_result_25 = 0; if (str_contains(prev_top5, ch_id1)) { _if_result_25 = (0); } else { _if_result_25 = (1); } _if_result_25; })); } _if_result_24; });
+  el_val_t ch2 = ({ el_val_t _if_result_26 = 0; if (str_eq(ch_id2, EL_STR(""))) { _if_result_26 = (0); } else { _if_result_26 = (({ el_val_t _if_result_27 = 0; if (str_contains(prev_top5, ch_id2)) { _if_result_27 = (0); } else { _if_result_27 = (1); } _if_result_27; })); } _if_result_26; });
+  el_val_t ch3 = ({ el_val_t _if_result_28 = 0; if (str_eq(ch_id3, EL_STR(""))) { _if_result_28 = (0); } else { _if_result_28 = (({ el_val_t _if_result_29 = 0; if (str_contains(prev_top5, ch_id3)) { _if_result_29 = (0); } else { _if_result_29 = (1); } _if_result_29; })); } _if_result_28; });
+  el_val_t ch4 = ({ el_val_t _if_result_30 = 0; if (str_eq(ch_id4, EL_STR(""))) { _if_result_30 = (0); } else { _if_result_30 = (({ el_val_t _if_result_31 = 0; if (str_contains(prev_top5, ch_id4)) { _if_result_31 = (0); } else { _if_result_31 = (1); } _if_result_31; })); } _if_result_30; });
   el_val_t wm_churn = ((((ch0 + ch1) + ch2) + ch3) + ch4);
   state_set(EL_STR("soul.prev_wm_top5"), el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(wm_top0_id, EL_STR("|")), ch_id1), EL_STR("|")), ch_id2), EL_STR("|")), ch_id3), EL_STR("|")), ch_id4));
   el_val_t wm_top0_wm_raw = json_get(wm_top0, EL_STR("wm"));
-  el_val_t wm_top0_wm = ({ el_val_t _if_result_36 = 0; if (str_eq(wm_top0_wm_raw, EL_STR(""))) { _if_result_36 = (EL_STR("0")); } else { _if_result_36 = (wm_top0_wm_raw); } _if_result_36; });
+  el_val_t wm_top0_wm = ({ el_val_t _if_result_32 = 0; if (str_eq(wm_top0_wm_raw, EL_STR(""))) { _if_result_32 = (EL_STR("0")); } else { _if_result_32 = (wm_top0_wm_raw); } _if_result_32; });
   el_val_t act_stats = engram_act_stats_json();
   el_val_t act_evict_raw = json_get(act_stats, EL_STR("wm_evicted"));
-  el_val_t act_evict = ({ el_val_t _if_result_37 = 0; if (str_eq(act_evict_raw, EL_STR(""))) { _if_result_37 = (EL_STR("-1")); } else { _if_result_37 = (act_evict_raw); } _if_result_37; });
+  el_val_t act_evict = ({ el_val_t _if_result_33 = 0; if (str_eq(act_evict_raw, EL_STR(""))) { _if_result_33 = (EL_STR("-1")); } else { _if_result_33 = (act_evict_raw); } _if_result_33; });
   el_val_t act_bt_raw = json_get(act_stats, EL_STR("breakthroughs"));
-  el_val_t act_bt = ({ el_val_t _if_result_38 = 0; if (str_eq(act_bt_raw, EL_STR(""))) { _if_result_38 = (EL_STR("-1")); } else { _if_result_38 = (act_bt_raw); } _if_result_38; });
-  el_val_t evict_now = ({ el_val_t _if_result_39 = 0; if (str_eq(act_evict_raw, EL_STR(""))) { _if_result_39 = ((0 - 1)); } else { _if_result_39 = (str_to_int(act_evict_raw)); } _if_result_39; });
-  el_val_t bt_now = ({ el_val_t _if_result_40 = 0; if (str_eq(act_bt_raw, EL_STR(""))) { _if_result_40 = ((0 - 1)); } else { _if_result_40 = (str_to_int(act_bt_raw)); } _if_result_40; });
+  el_val_t act_bt = ({ el_val_t _if_result_34 = 0; if (str_eq(act_bt_raw, EL_STR(""))) { _if_result_34 = (EL_STR("-1")); } else { _if_result_34 = (act_bt_raw); } _if_result_34; });
+  el_val_t evict_now = ({ el_val_t _if_result_35 = 0; if (str_eq(act_evict_raw, EL_STR(""))) { _if_result_35 = ((0 - 1)); } else { _if_result_35 = (str_to_int(act_evict_raw)); } _if_result_35; });
+  el_val_t bt_now = ({ el_val_t _if_result_36 = 0; if (str_eq(act_bt_raw, EL_STR(""))) { _if_result_36 = ((0 - 1)); } else { _if_result_36 = (str_to_int(act_bt_raw)); } _if_result_36; });
   el_val_t prev_evict_raw = state_get(EL_STR("soul.prev_wm_evicted"));
-  el_val_t prev_evict = ({ el_val_t _if_result_41 = 0; if (str_eq(prev_evict_raw, EL_STR(""))) { _if_result_41 = (0); } else { _if_result_41 = (str_to_int(prev_evict_raw)); } _if_result_41; });
+  el_val_t prev_evict = ({ el_val_t _if_result_37 = 0; if (str_eq(prev_evict_raw, EL_STR(""))) { _if_result_37 = (0); } else { _if_result_37 = (str_to_int(prev_evict_raw)); } _if_result_37; });
   el_val_t prev_bt_raw = state_get(EL_STR("soul.prev_breakthroughs"));
-  el_val_t prev_bt = ({ el_val_t _if_result_42 = 0; if (str_eq(prev_bt_raw, EL_STR(""))) { _if_result_42 = (0); } else { _if_result_42 = (str_to_int(prev_bt_raw)); } _if_result_42; });
-  el_val_t evict_delta = ({ el_val_t _if_result_43 = 0; if ((evict_now < 0)) { _if_result_43 = (0); } else { _if_result_43 = (({ el_val_t _if_result_44 = 0; if ((evict_now < prev_evict)) { _if_result_44 = (evict_now); } else { _if_result_44 = ((evict_now - prev_evict)); } _if_result_44; })); } _if_result_43; });
-  el_val_t bt_delta = ({ el_val_t _if_result_45 = 0; if ((bt_now < 0)) { _if_result_45 = (0); } else { _if_result_45 = (({ el_val_t _if_result_46 = 0; if ((bt_now < prev_bt)) { _if_result_46 = (bt_now); } else { _if_result_46 = ((bt_now - prev_bt)); } _if_result_46; })); } _if_result_45; });
+  el_val_t prev_bt = ({ el_val_t _if_result_38 = 0; if (str_eq(prev_bt_raw, EL_STR(""))) { _if_result_38 = (0); } else { _if_result_38 = (str_to_int(prev_bt_raw)); } _if_result_38; });
+  el_val_t evict_delta = ({ el_val_t _if_result_39 = 0; if ((evict_now < 0)) { _if_result_39 = (0); } else { _if_result_39 = (({ el_val_t _if_result_40 = 0; if ((evict_now < prev_evict)) { _if_result_40 = (evict_now); } else { _if_result_40 = ((evict_now - prev_evict)); } _if_result_40; })); } _if_result_39; });
+  el_val_t bt_delta = ({ el_val_t _if_result_41 = 0; if ((bt_now < 0)) { _if_result_41 = (0); } else { _if_result_41 = (({ el_val_t _if_result_42 = 0; if ((bt_now < prev_bt)) { _if_result_42 = (bt_now); } else { _if_result_42 = ((bt_now - prev_bt)); } _if_result_42; })); } _if_result_41; });
   if (evict_now >= 0) {
     state_set(EL_STR("soul.prev_wm_evicted"), int_to_str(evict_now));
   }
@@ -253,72 +221,14 @@ el_val_t emit_heartbeat(void) {
   }
   el_val_t hb_stats = http_get(el_str_concat(hb_engram_url, EL_STR("/api/stats")));
   el_val_t embed_elig_raw = json_get(hb_stats, EL_STR("embed_eligible_count"));
-  el_val_t embed_elig = ({ el_val_t _if_result_47 = 0; if (str_eq(embed_elig_raw, EL_STR(""))) { _if_result_47 = (EL_STR("-1")); } else { _if_result_47 = (embed_elig_raw); } _if_result_47; });
+  el_val_t embed_elig = ({ el_val_t _if_result_43 = 0; if (str_eq(embed_elig_raw, EL_STR(""))) { _if_result_43 = (EL_STR("-1")); } else { _if_result_43 = (embed_elig_raw); } _if_result_43; });
   el_val_t hb_ats_raw = state_get(EL_STR("soul.auto_term_streak"));
-  el_val_t hb_ats = ({ el_val_t _if_result_48 = 0; if (str_eq(hb_ats_raw, EL_STR(""))) { _if_result_48 = (0); } else { _if_result_48 = (str_to_int(hb_ats_raw)); } _if_result_48; });
-  el_val_t hb_ate_raw = state_get(EL_STR("soul.auto_term_empty_streak"));
-  el_val_t hb_ate = ({ el_val_t _if_result_49 = 0; if (str_eq(hb_ate_raw, EL_STR(""))) { _if_result_49 = (0); } else { _if_result_49 = (str_to_int(hb_ate_raw)); } _if_result_49; });
-  el_val_t hebb_warm_raw = json_get(act_stats, EL_STR("hebb_warm"));
-  el_val_t hebb_warm = ({ el_val_t _if_result_50 = 0; if (str_eq(hebb_warm_raw, EL_STR(""))) { _if_result_50 = (EL_STR("-1")); } else { _if_result_50 = (hebb_warm_raw); } _if_result_50; });
-  el_val_t hebb_max_raw = json_get(act_stats, EL_STR("hebb_max"));
-  el_val_t hebb_max = ({ el_val_t _if_result_51 = 0; if (str_eq(hebb_max_raw, EL_STR(""))) { _if_result_51 = (EL_STR("-1")); } else { _if_result_51 = (hebb_max_raw); } _if_result_51; });
-  el_val_t hebb_links_raw = json_get(act_stats, EL_STR("hebb_links"));
-  el_val_t hebb_links = ({ el_val_t _if_result_52 = 0; if (str_eq(hebb_links_raw, EL_STR(""))) { _if_result_52 = (EL_STR("-1")); } else { _if_result_52 = (hebb_links_raw); } _if_result_52; });
-  el_val_t hebb_cands_raw = json_get(act_stats, EL_STR("hebb_cands"));
-  el_val_t hebb_cands = ({ el_val_t _if_result_53 = 0; if (str_eq(hebb_cands_raw, EL_STR(""))) { _if_result_53 = (EL_STR("-1")); } else { _if_result_53 = (hebb_cands_raw); } _if_result_53; });
-  el_val_t hebb_cmax_raw = json_get(act_stats, EL_STR("hebb_cand_max"));
-  el_val_t hebb_cmax = ({ el_val_t _if_result_54 = 0; if (str_eq(hebb_cmax_raw, EL_STR(""))) { _if_result_54 = (EL_STR("-1")); } else { _if_result_54 = (hebb_cmax_raw); } _if_result_54; });
-  el_val_t hebb_mass_raw = json_get(act_stats, EL_STR("hebb_mass"));
-  el_val_t hebb_mass = ({ el_val_t _if_result_55 = 0; if (str_eq(hebb_mass_raw, EL_STR(""))) { _if_result_55 = (EL_STR("-1")); } else { _if_result_55 = (hebb_mass_raw); } _if_result_55; });
-  el_val_t hebb_edges_raw = json_get(act_stats, EL_STR("hebb_edges"));
-  el_val_t hebb_edges = ({ el_val_t _if_result_56 = 0; if (str_eq(hebb_edges_raw, EL_STR(""))) { _if_result_56 = (EL_STR("-1")); } else { _if_result_56 = (hebb_edges_raw); } _if_result_56; });
-  el_val_t wb_pend_raw = json_get(act_stats, EL_STR("hebb_wb_pending"));
-  el_val_t wb_pend = ({ el_val_t _if_result_57 = 0; if (str_eq(wb_pend_raw, EL_STR(""))) { _if_result_57 = (EL_STR("-1")); } else { _if_result_57 = (wb_pend_raw); } _if_result_57; });
-  el_val_t wb_drain_raw = json_get(act_stats, EL_STR("hebb_wb_drained"));
-  el_val_t wb_drain = ({ el_val_t _if_result_58 = 0; if (str_eq(wb_drain_raw, EL_STR(""))) { _if_result_58 = (EL_STR("-1")); } else { _if_result_58 = (wb_drain_raw); } _if_result_58; });
-  el_val_t wb_drop_raw = json_get(act_stats, EL_STR("hebb_wb_dropped"));
-  el_val_t wb_drop = ({ el_val_t _if_result_59 = 0; if (str_eq(wb_drop_raw, EL_STR(""))) { _if_result_59 = (EL_STR("-1")); } else { _if_result_59 = (wb_drop_raw); } _if_result_59; });
-  el_val_t wb_sent_raw = state_get(EL_STR("soul.hebb_wb_sent"));
-  el_val_t wb_sent = ({ el_val_t _if_result_60 = 0; if (str_eq(wb_sent_raw, EL_STR(""))) { _if_result_60 = (EL_STR("0")); } else { _if_result_60 = (wb_sent_raw); } _if_result_60; });
-  el_val_t dup_wm_g_raw = json_get(act_stats, EL_STR("dup_wm_global"));
-  el_val_t dup_wm_g = ({ el_val_t _if_result_61 = 0; if (str_eq(dup_wm_g_raw, EL_STR(""))) { _if_result_61 = (EL_STR("-1")); } else { _if_result_61 = (dup_wm_g_raw); } _if_result_61; });
+  el_val_t hb_ats = ({ el_val_t _if_result_44 = 0; if (str_eq(hb_ats_raw, EL_STR(""))) { _if_result_44 = (0); } else { _if_result_44 = (str_to_int(hb_ats_raw)); } _if_result_44; });
   el_val_t act_brk_raw = json_get(act_stats, EL_STR("embed_breaker_open"));
-  el_val_t act_brk = ({ el_val_t _if_result_62 = 0; if (str_eq(act_brk_raw, EL_STR(""))) { _if_result_62 = (EL_STR("-1")); } else { _if_result_62 = (act_brk_raw); } _if_result_62; });
-  el_val_t emb_cf_raw = json_get(act_stats, EL_STR("embed_consec_fail"));
-  el_val_t emb_cf = ({ el_val_t _if_result_63 = 0; if (str_eq(emb_cf_raw, EL_STR(""))) { _if_result_63 = (EL_STR("-1")); } else { _if_result_63 = (emb_cf_raw); } _if_result_63; });
+  el_val_t act_brk = ({ el_val_t _if_result_45 = 0; if (str_eq(act_brk_raw, EL_STR(""))) { _if_result_45 = (EL_STR("-1")); } else { _if_result_45 = (act_brk_raw); } _if_result_45; });
   el_val_t ctx_cos_raw = json_get(act_stats, EL_STR("ctx_cos"));
-  el_val_t ctx_cos = ({ el_val_t _if_result_64 = 0; if (str_eq(ctx_cos_raw, EL_STR(""))) { _if_result_64 = (EL_STR("-2")); } else { _if_result_64 = (ctx_cos_raw); } _if_result_64; });
-  el_val_t dup_seeds_raw = json_get(act_stats, EL_STR("dup_seeds"));
-  el_val_t dup_seeds = ({ el_val_t _if_result_65 = 0; if (str_eq(dup_seeds_raw, EL_STR(""))) { _if_result_65 = (EL_STR("-1")); } else { _if_result_65 = (dup_seeds_raw); } _if_result_65; });
-  el_val_t dup_wm_raw = json_get(act_stats, EL_STR("dup_wm"));
-  el_val_t dup_wm = ({ el_val_t _if_result_66 = 0; if (str_eq(dup_wm_raw, EL_STR(""))) { _if_result_66 = (EL_STR("-1")); } else { _if_result_66 = (dup_wm_raw); } _if_result_66; });
-  el_val_t txt_dmg_raw = json_get(act_stats, EL_STR("txt_damaged"));
-  el_val_t txt_dmg = ({ el_val_t _if_result_67 = 0; if (str_eq(txt_dmg_raw, EL_STR(""))) { _if_result_67 = (EL_STR("-1")); } else { _if_result_67 = (txt_dmg_raw); } _if_result_67; });
-  el_val_t tc_raw = state_get(EL_STR("soul.txt_census_countdown"));
-  el_val_t tc_n = ({ el_val_t _if_result_68 = 0; if (str_eq(tc_raw, EL_STR(""))) { _if_result_68 = (0); } else { _if_result_68 = (str_to_int(tc_raw)); } _if_result_68; });
-  if (tc_n <= 0) {
-    el_val_t th_resp = http_get(el_str_concat(hb_engram_url, EL_STR("/api/text-health")));
-    el_val_t th_pct = json_get(th_resp, EL_STR("damaged_pct"));
-    if (!str_eq(th_pct, EL_STR(""))) {
-      state_set(EL_STR("soul.txt_damaged_pct"), th_pct);
-      state_set(EL_STR("soul.txt_damaged_n"), json_get(th_resp, EL_STR("damaged")));
-      state_set(EL_STR("soul.txt_scanned_n"), json_get(th_resp, EL_STR("scanned")));
-      state_set(EL_STR("soul.txt_census_ts"), int_to_str(ts));
-    }
-    state_set(EL_STR("soul.txt_census_countdown"), EL_STR("30"));
-  }
-  if (tc_n > 0) {
-    state_set(EL_STR("soul.txt_census_countdown"), int_to_str((tc_n - 1)));
-  }
-  el_val_t dmg_pct_raw = state_get(EL_STR("soul.txt_damaged_pct"));
-  el_val_t dmg_pct = ({ el_val_t _if_result_69 = 0; if (str_eq(dmg_pct_raw, EL_STR(""))) { _if_result_69 = (EL_STR("-1")); } else { _if_result_69 = (dmg_pct_raw); } _if_result_69; });
-  el_val_t dmg_n_raw = state_get(EL_STR("soul.txt_damaged_n"));
-  el_val_t dmg_n = ({ el_val_t _if_result_70 = 0; if (str_eq(dmg_n_raw, EL_STR(""))) { _if_result_70 = (EL_STR("-1")); } else { _if_result_70 = (dmg_n_raw); } _if_result_70; });
-  el_val_t dmg_scan_raw = state_get(EL_STR("soul.txt_scanned_n"));
-  el_val_t dmg_scan = ({ el_val_t _if_result_71 = 0; if (str_eq(dmg_scan_raw, EL_STR(""))) { _if_result_71 = (EL_STR("-1")); } else { _if_result_71 = (dmg_scan_raw); } _if_result_71; });
-  el_val_t dmg_ts_raw = state_get(EL_STR("soul.txt_census_ts"));
-  el_val_t dmg_age = ({ el_val_t _if_result_72 = 0; if (str_eq(dmg_ts_raw, EL_STR(""))) { _if_result_72 = ((0 - 1)); } else { _if_result_72 = ((ts - str_to_int(dmg_ts_raw))); } _if_result_72; });
-  el_val_t payload = el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(EL_STR("{\"event\":\"heartbeat\",\"pulse\":"), pulse), EL_STR(",\"tick\":")), pulse), EL_STR(",\"boot\":")), boot), EL_STR(",\"idle\":")), idle), EL_STR(",\"idle_ms\":")), int_to_str(idle_ms)), EL_STR(",\"node_count\":")), int_to_str(nc)), EL_STR(",\"edge_count\":")), int_to_str(ec)), EL_STR(",\"node_delta\":")), int_to_str(node_delta)), EL_STR(",\"edge_delta\":")), int_to_str(edge_delta)), EL_STR(",\"wm_active\":")), int_to_str(wmc)), EL_STR(",\"wm_delta\":")), int_to_str(wm_delta)), EL_STR(",\"wm_saturated\":")), int_to_str(wm_sat)), EL_STR(",\"wm_top0_streak\":")), int_to_str(t0streak)), EL_STR(",\"wm_churn\":")), int_to_str(wm_churn)), EL_STR(",\"wm_top0_wm\":")), wm_top0_wm), EL_STR(",\"sync_added_total\":")), sat_str), EL_STR(",\"sync_age_ms\":")), int_to_str(sync_age)), EL_STR(",\"wm_avg_weight\":")), wm_avg_str), EL_STR(",\"wm_top\":")), wm_top), EL_STR(",\"ts\":")), int_to_str(ts)), EL_STR(",\"uptime_ms\":")), int_to_str(up_ms)), EL_STR(",\"uptime\":\"")), up_human), EL_STR("\",\"embed_ok\":")), int_to_str(emb_ok)), EL_STR(",\"embed_backfilled\":")), bf_done), EL_STR(",\"embed_count\":")), bf_total), EL_STR(",\"embed_eligible\":")), embed_elig), EL_STR(",\"wm_evicted\":")), act_evict), EL_STR(",\"wm_evicted_delta\":")), int_to_str(evict_delta)), EL_STR(",\"breakthroughs\":")), act_bt), EL_STR(",\"breakthroughs_delta\":")), int_to_str(bt_delta)), EL_STR(",\"auto_term_streak\":")), int_to_str(hb_ats)), EL_STR(",\"auto_term_empty_streak\":")), int_to_str(hb_ate)), EL_STR(",\"embed_breaker_open\":")), act_brk), EL_STR(",\"ctx_cos\":")), ctx_cos), EL_STR(",\"dup_seeds\":")), dup_seeds), EL_STR(",\"dup_wm\":")), dup_wm), EL_STR(",\"dup_wm_global\":")), dup_wm_g), EL_STR(",\"hebb_warm\":")), hebb_warm), EL_STR(",\"hebb_max\":")), hebb_max), EL_STR(",\"hebb_links\":")), hebb_links), EL_STR(",\"hebb_cands\":")), hebb_cands), EL_STR(",\"hebb_cand_max\":")), hebb_cmax), EL_STR(",\"hebb_mass\":")), hebb_mass), EL_STR(",\"hebb_edges\":")), hebb_edges), EL_STR(",\"embed_consec_fail\":")), emb_cf), EL_STR(",\"txt_damaged_pct\":")), dmg_pct), EL_STR(",\"txt_damaged_n\":")), dmg_n), EL_STR(",\"txt_scanned_n\":")), dmg_scan), EL_STR(",\"txt_census_age_ms\":")), int_to_str(dmg_age)), EL_STR(",\"hebb_wb_pending\":")), wb_pend), EL_STR(",\"hebb_wb_drained\":")), wb_drain), EL_STR(",\"hebb_wb_dropped\":")), wb_drop), EL_STR(",\"hebb_wb_sent\":")), wb_sent), EL_STR(",\"ise_fail\":")), fail_str), EL_STR(",\"txt_damaged\":")), txt_dmg), EL_STR("}"));
+  el_val_t ctx_cos = ({ el_val_t _if_result_46 = 0; if (str_eq(ctx_cos_raw, EL_STR(""))) { _if_result_46 = (EL_STR("-2")); } else { _if_result_46 = (ctx_cos_raw); } _if_result_46; });
+  el_val_t payload = el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(EL_STR("{\"event\":\"heartbeat\",\"pulse\":"), pulse), EL_STR(",\"tick\":")), pulse), EL_STR(",\"boot\":")), boot), EL_STR(",\"idle\":")), idle), EL_STR(",\"idle_ms\":")), int_to_str(idle_ms)), EL_STR(",\"node_count\":")), int_to_str(nc)), EL_STR(",\"edge_count\":")), int_to_str(ec)), EL_STR(",\"node_delta\":")), int_to_str(node_delta)), EL_STR(",\"edge_delta\":")), int_to_str(edge_delta)), EL_STR(",\"wm_active\":")), int_to_str(wmc)), EL_STR(",\"wm_delta\":")), int_to_str(wm_delta)), EL_STR(",\"wm_saturated\":")), int_to_str(wm_sat)), EL_STR(",\"wm_top0_streak\":")), int_to_str(t0streak)), EL_STR(",\"wm_churn\":")), int_to_str(wm_churn)), EL_STR(",\"wm_top0_wm\":")), wm_top0_wm), EL_STR(",\"sync_added_total\":")), sat_str), EL_STR(",\"sync_age_ms\":")), int_to_str(sync_age)), EL_STR(",\"wm_avg_weight\":")), wm_avg_str), EL_STR(",\"wm_top\":")), wm_top), EL_STR(",\"ts\":")), int_to_str(ts)), EL_STR(",\"uptime_ms\":")), int_to_str(up_ms)), EL_STR(",\"uptime\":\"")), up_human), EL_STR("\",\"embed_ok\":")), int_to_str(emb_ok)), EL_STR(",\"embed_backfilled\":")), bf_done), EL_STR(",\"embed_count\":")), bf_total), EL_STR(",\"embed_eligible\":")), embed_elig), EL_STR(",\"wm_evicted\":")), act_evict), EL_STR(",\"wm_evicted_delta\":")), int_to_str(evict_delta)), EL_STR(",\"breakthroughs\":")), act_bt), EL_STR(",\"breakthroughs_delta\":")), int_to_str(bt_delta)), EL_STR(",\"auto_term_streak\":")), int_to_str(hb_ats)), EL_STR(",\"embed_breaker_open\":")), act_brk), EL_STR(",\"ctx_cos\":")), ctx_cos), EL_STR(",\"ise_fail\":")), fail_str), EL_STR("}"));
   ise_post(payload);
   return 0;
 }
@@ -379,13 +289,6 @@ el_val_t auto_term_try_slot(el_val_t slot_type, el_val_t slot_lbl) {
         if (str_contains(term, EL_STR("'"))) {
           state_set(EL_STR("_ats_gw"), EL_STR("1"));
         }
-        el_val_t df_max = (engram_node_count() / 400);
-        el_val_t df_term = engram_label_df(term);
-        if (df_term > df_max) {
-          if (df_term > 8) {
-            state_set(EL_STR("_ats_gw"), EL_STR("1"));
-          }
-        }
         if (str_eq(term, state_get(EL_STR("soul.tabu_t0")))) {
           state_set(EL_STR("_ats_gw"), EL_STR("1"));
         }
@@ -471,21 +374,16 @@ el_val_t proactive_curiosity(void) {
   auto_term_try_slot(json_get(wm10_n1, EL_STR("node_type")), json_get(wm10_n1, EL_STR("label")));
   auto_term_try_slot(json_get(wm10_n0, EL_STR("node_type")), json_get(wm10_n0, EL_STR("label")));
   el_val_t auto_term = state_get(EL_STR("cseed_auto"));
-  el_val_t results_auto = ({ el_val_t _if_result_73 = 0; if (str_eq(auto_term, EL_STR(""))) { _if_result_73 = (EL_STR("[]")); } else { _if_result_73 = (engram_activate_json(auto_term, 1)); } _if_result_73; });
+  el_val_t results_auto = ({ el_val_t _if_result_47 = 0; if (str_eq(auto_term, EL_STR(""))) { _if_result_47 = (EL_STR("[]")); } else { _if_result_47 = (engram_activate_json(auto_term, 1)); } _if_result_47; });
   el_val_t found_auto = json_array_len(results_auto);
   el_val_t total_found = (found + found_auto);
   el_val_t safe_auto = str_replace(auto_term, EL_STR("\""), EL_STR("'"));
   el_val_t prev_auto = state_get(EL_STR("soul.prev_auto_term"));
   el_val_t atstreak_raw = state_get(EL_STR("soul.auto_term_streak"));
-  el_val_t atstreak_prev = ({ el_val_t _if_result_74 = 0; if (str_eq(atstreak_raw, EL_STR(""))) { _if_result_74 = (0); } else { _if_result_74 = (str_to_int(atstreak_raw)); } _if_result_74; });
-  el_val_t is_empty = str_eq(auto_term, EL_STR(""));
-  el_val_t atstreak = ({ el_val_t _if_result_75 = 0; if (is_empty) { _if_result_75 = (0); } else { _if_result_75 = (({ el_val_t _if_result_76 = 0; if (str_eq(auto_term, prev_auto)) { _if_result_76 = ((atstreak_prev + 1)); } else { _if_result_76 = (1); } _if_result_76; })); } _if_result_75; });
-  el_val_t atempty_raw = state_get(EL_STR("soul.auto_term_empty_streak"));
-  el_val_t atempty_prev = ({ el_val_t _if_result_77 = 0; if (str_eq(atempty_raw, EL_STR(""))) { _if_result_77 = (0); } else { _if_result_77 = (str_to_int(atempty_raw)); } _if_result_77; });
-  el_val_t atempty = ({ el_val_t _if_result_78 = 0; if (is_empty) { _if_result_78 = ((atempty_prev + 1)); } else { _if_result_78 = (0); } _if_result_78; });
+  el_val_t atstreak_prev = ({ el_val_t _if_result_48 = 0; if (str_eq(atstreak_raw, EL_STR(""))) { _if_result_48 = (0); } else { _if_result_48 = (str_to_int(atstreak_raw)); } _if_result_48; });
+  el_val_t atstreak = ({ el_val_t _if_result_49 = 0; if (str_eq(auto_term, prev_auto)) { _if_result_49 = ((atstreak_prev + 1)); } else { _if_result_49 = (1); } _if_result_49; });
   state_set(EL_STR("soul.prev_auto_term"), auto_term);
   state_set(EL_STR("soul.auto_term_streak"), int_to_str(atstreak));
-  state_set(EL_STR("soul.auto_term_empty_streak"), int_to_str(atempty));
   if (!str_eq(auto_term, EL_STR(""))) {
     state_set(EL_STR("soul.tabu_t3"), state_get(EL_STR("soul.tabu_t2")));
     state_set(EL_STR("soul.tabu_t2"), state_get(EL_STR("soul.tabu_t1")));
@@ -494,7 +392,7 @@ el_val_t proactive_curiosity(void) {
   }
   el_val_t wmc = engram_wm_count();
   el_val_t wm3 = engram_wm_top_json(3);
-  el_val_t ise = el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(EL_STR("{\"event\":\"curiosity_scan\",\"seed\":\""), curiosity_seed), EL_STR("\",\"auto_term\":\"")), safe_auto), EL_STR("\",\"auto_term_streak\":")), int_to_str(atstreak)), EL_STR(",\"auto_term_empty_streak\":")), int_to_str(atempty)), EL_STR(",\"minute_block\":")), int_to_str(minute_block)), EL_STR(",\"activated\":")), int_to_str(total_found)), EL_STR(",\"wm_active\":")), int_to_str(wmc)), EL_STR(",\"wm_top\":")), wm3), EL_STR(",\"ts\":")), int_to_str(ts)), EL_STR("}"));
+  el_val_t ise = el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(EL_STR("{\"event\":\"curiosity_scan\",\"seed\":\""), curiosity_seed), EL_STR("\",\"auto_term\":\"")), safe_auto), EL_STR("\",\"auto_term_streak\":")), int_to_str(atstreak)), EL_STR(",\"minute_block\":")), int_to_str(minute_block)), EL_STR(",\"activated\":")), int_to_str(total_found)), EL_STR(",\"wm_active\":")), int_to_str(wmc)), EL_STR(",\"wm_top\":")), wm3), EL_STR(",\"ts\":")), int_to_str(ts)), EL_STR("}"));
   ise_post(ise);
   return (total_found > 0);
   return 0;
@@ -677,18 +575,17 @@ el_val_t awareness_run(void) {
     state_set(EL_STR("soul.boot_ts"), int_to_str(time_now()));
   }
   el_val_t tick_raw = env(EL_STR("SOUL_TICK_MS"));
-  el_val_t tick_ms = ({ el_val_t _if_result_79 = 0; if (str_eq(tick_raw, EL_STR(""))) { _if_result_79 = (200); } else { _if_result_79 = (str_to_int(tick_raw)); } _if_result_79; });
+  el_val_t tick_ms = ({ el_val_t _if_result_50 = 0; if (str_eq(tick_raw, EL_STR(""))) { _if_result_50 = (200); } else { _if_result_50 = (str_to_int(tick_raw)); } _if_result_50; });
   el_val_t beat_ms_raw = env(EL_STR("SOUL_HEARTBEAT_MS"));
-  el_val_t beat_ms = ({ el_val_t _if_result_80 = 0; if (str_eq(beat_ms_raw, EL_STR(""))) { _if_result_80 = (60000); } else { _if_result_80 = (str_to_int(beat_ms_raw)); } _if_result_80; });
+  el_val_t beat_ms = ({ el_val_t _if_result_51 = 0; if (str_eq(beat_ms_raw, EL_STR(""))) { _if_result_51 = (60000); } else { _if_result_51 = (str_to_int(beat_ms_raw)); } _if_result_51; });
   el_val_t scan_ms = (beat_ms / 2);
   while (1) {
     el_val_t tick_mark = el_arena_push();
     el_val_t running = state_get(EL_STR("soul.running"));
     if (str_eq(running, EL_STR("false"))) {
       el_val_t sd_boot_raw = state_get(EL_STR("soul_boot_count"));
-      el_val_t sd_boot = ({ el_val_t _if_result_81 = 0; if (str_eq(sd_boot_raw, EL_STR(""))) { _if_result_81 = (EL_STR("0")); } else { _if_result_81 = (sd_boot_raw); } _if_result_81; });
-      el_val_t sd_wb = hebb_consolidate();
-      ise_post(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(EL_STR("{\"event\":\"shutdown\",\"boot\":"), sd_boot), EL_STR(",\"pulse\":")), int_to_str(pulse_count())), EL_STR(",\"hebb_wb_sent\":")), int_to_str(sd_wb)), EL_STR(",\"uptime_ms\":")), int_to_str(elapsed_ms())), EL_STR(",\"ts\":")), int_to_str(time_now())), EL_STR("}")));
+      el_val_t sd_boot = ({ el_val_t _if_result_52 = 0; if (str_eq(sd_boot_raw, EL_STR(""))) { _if_result_52 = (EL_STR("0")); } else { _if_result_52 = (sd_boot_raw); } _if_result_52; });
+      ise_post(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(EL_STR("{\"event\":\"shutdown\",\"boot\":"), sd_boot), EL_STR(",\"pulse\":")), int_to_str(pulse_count())), EL_STR(",\"uptime_ms\":")), int_to_str(elapsed_ms())), EL_STR(",\"ts\":")), int_to_str(time_now())), EL_STR("}")));
       println(EL_STR("[awareness] exiting"));
       el_arena_pop(tick_mark);
       return EL_STR("");
@@ -703,12 +600,10 @@ el_val_t awareness_run(void) {
     }
     el_val_t now_ts = time_now();
     el_val_t last_beat_str = state_get(EL_STR("soul.last_beat_ts"));
-    el_val_t last_beat_ts = ({ el_val_t _if_result_82 = 0; if (str_eq(last_beat_str, EL_STR(""))) { _if_result_82 = (0); } else { _if_result_82 = (str_to_int(last_beat_str)); } _if_result_82; });
+    el_val_t last_beat_ts = ({ el_val_t _if_result_53 = 0; if (str_eq(last_beat_str, EL_STR(""))) { _if_result_53 = (0); } else { _if_result_53 = (str_to_int(last_beat_str)); } _if_result_53; });
     el_val_t beat_elapsed = (now_ts - last_beat_ts);
     el_val_t should_beat = (beat_elapsed >= beat_ms);
     if (should_beat) {
-      el_val_t wb_sent_n = hebb_consolidate();
-      state_set(EL_STR("soul.hebb_wb_sent"), int_to_str(wb_sent_n));
       emit_heartbeat();
       state_set(EL_STR("soul.last_beat_ts"), int_to_str(now_ts));
       el_val_t snap_path = state_get(EL_STR("soul_snapshot_path"));
@@ -717,7 +612,7 @@ el_val_t awareness_run(void) {
       }
     }
     el_val_t last_scan_str = state_get(EL_STR("soul.last_scan_ts"));
-    el_val_t last_scan_ts = ({ el_val_t _if_result_83 = 0; if (str_eq(last_scan_str, EL_STR(""))) { _if_result_83 = (0); } else { _if_result_83 = (str_to_int(last_scan_str)); } _if_result_83; });
+    el_val_t last_scan_ts = ({ el_val_t _if_result_54 = 0; if (str_eq(last_scan_str, EL_STR(""))) { _if_result_54 = (0); } else { _if_result_54 = (str_to_int(last_scan_str)); } _if_result_54; });
     el_val_t scan_elapsed = (now_ts - last_scan_ts);
     el_val_t should_scan = (!did_work && (scan_elapsed >= scan_ms));
     if (should_scan) {
@@ -725,15 +620,15 @@ el_val_t awareness_run(void) {
       state_set(EL_STR("soul.last_scan_ts"), int_to_str(now_ts));
     }
     el_val_t refresh_ms_raw = env(EL_STR("SOUL_REFRESH_MS"));
-    el_val_t refresh_ms = ({ el_val_t _if_result_84 = 0; if (str_eq(refresh_ms_raw, EL_STR(""))) { _if_result_84 = (600000); } else { _if_result_84 = (str_to_int(refresh_ms_raw)); } _if_result_84; });
+    el_val_t refresh_ms = ({ el_val_t _if_result_55 = 0; if (str_eq(refresh_ms_raw, EL_STR(""))) { _if_result_55 = (600000); } else { _if_result_55 = (str_to_int(refresh_ms_raw)); } _if_result_55; });
     el_val_t last_refresh_str = state_get(EL_STR("soul.last_refresh_ts"));
-    el_val_t last_refresh_ts = ({ el_val_t _if_result_85 = 0; if (str_eq(last_refresh_str, EL_STR(""))) { _if_result_85 = (0); } else { _if_result_85 = (str_to_int(last_refresh_str)); } _if_result_85; });
+    el_val_t last_refresh_ts = ({ el_val_t _if_result_56 = 0; if (str_eq(last_refresh_str, EL_STR(""))) { _if_result_56 = (0); } else { _if_result_56 = (str_to_int(last_refresh_str)); } _if_result_56; });
     el_val_t refresh_elapsed = (now_ts - last_refresh_ts);
     el_val_t should_refresh = (refresh_elapsed >= refresh_ms);
     if (should_refresh) {
       el_val_t sync_env_url = env(EL_STR("SOUL_ISE_URL"));
-      el_val_t sync_state_url = ({ el_val_t _if_result_86 = 0; if (str_eq(sync_env_url, EL_STR(""))) { _if_result_86 = (state_get(EL_STR("soul_engram_url"))); } else { _if_result_86 = (sync_env_url); } _if_result_86; });
-      el_val_t engram_url = ({ el_val_t _if_result_87 = 0; if (str_eq(sync_state_url, EL_STR(""))) { _if_result_87 = (EL_STR("http://localhost:8742")); } else { _if_result_87 = (sync_state_url); } _if_result_87; });
+      el_val_t sync_state_url = ({ el_val_t _if_result_57 = 0; if (str_eq(sync_env_url, EL_STR(""))) { _if_result_57 = (state_get(EL_STR("soul_engram_url"))); } else { _if_result_57 = (sync_env_url); } _if_result_57; });
+      el_val_t engram_url = ({ el_val_t _if_result_58 = 0; if (str_eq(sync_state_url, EL_STR(""))) { _if_result_58 = (EL_STR("http://localhost:8742")); } else { _if_result_58 = (sync_state_url); } _if_result_58; });
       if (!str_eq(engram_url, EL_STR(""))) {
         el_val_t sync_json = http_get(el_str_concat(engram_url, EL_STR("/api/sync")));
         el_val_t sync_ok = (!str_eq(sync_json, EL_STR("")) && !str_eq(sync_json, EL_STR("{}")));
@@ -746,10 +641,10 @@ el_val_t awareness_run(void) {
           fs_write(tmp, sync_json);
           el_val_t added = engram_load_merge(tmp);
           el_val_t ret_raw = env(EL_STR("ENGRAM_ISE_RETENTION_MS"));
-          el_val_t ret_ms = ({ el_val_t _if_result_88 = 0; if (str_eq(ret_raw, EL_STR(""))) { _if_result_88 = (172800000); } else { _if_result_88 = (str_to_int(ret_raw)); } _if_result_88; });
+          el_val_t ret_ms = ({ el_val_t _if_result_59 = 0; if (str_eq(ret_raw, EL_STR(""))) { _if_result_59 = (172800000); } else { _if_result_59 = (str_to_int(ret_raw)); } _if_result_59; });
           el_val_t pruned_sync = engram_prune_telemetry(ret_ms);
           el_val_t sat_raw = state_get(EL_STR("soul.sync_added_total"));
-          el_val_t sat_n = ({ el_val_t _if_result_89 = 0; if (str_eq(sat_raw, EL_STR(""))) { _if_result_89 = (0); } else { _if_result_89 = (str_to_int(sat_raw)); } _if_result_89; });
+          el_val_t sat_n = ({ el_val_t _if_result_60 = 0; if (str_eq(sat_raw, EL_STR(""))) { _if_result_60 = (0); } else { _if_result_60 = (str_to_int(sat_raw)); } _if_result_60; });
           state_set(EL_STR("soul.sync_added_total"), int_to_str((sat_n + added)));
           el_val_t ts2 = time_now();
           state_set(EL_STR("soul.last_sync_ok_ts"), int_to_str(ts2));
@@ -775,78 +670,78 @@ el_val_t security_research_authorized(void) {
 }
 
 el_val_t threat_score_command(el_val_t cmd) {
-  el_val_t s1 = ({ el_val_t _if_result_90 = 0; if (str_contains(cmd, EL_STR("nmap"))) { _if_result_90 = (30); } else { _if_result_90 = (0); } _if_result_90; });
-  el_val_t s2 = ({ el_val_t _if_result_91 = 0; if (str_contains(cmd, EL_STR("masscan"))) { _if_result_91 = (40); } else { _if_result_91 = (0); } _if_result_91; });
-  el_val_t s3 = ({ el_val_t _if_result_92 = 0; if (str_contains(cmd, EL_STR(" nc "))) { _if_result_92 = (20); } else { _if_result_92 = (0); } _if_result_92; });
-  el_val_t s4 = ({ el_val_t _if_result_93 = 0; if (str_contains(cmd, EL_STR("netcat"))) { _if_result_93 = (20); } else { _if_result_93 = (0); } _if_result_93; });
-  el_val_t s5 = ({ el_val_t _if_result_94 = 0; if (str_contains(cmd, EL_STR("/etc/shadow"))) { _if_result_94 = (80); } else { _if_result_94 = (0); } _if_result_94; });
-  el_val_t s6 = ({ el_val_t _if_result_95 = 0; if (str_contains(cmd, EL_STR("/etc/passwd"))) { _if_result_95 = (30); } else { _if_result_95 = (0); } _if_result_95; });
-  el_val_t s7 = ({ el_val_t _if_result_96 = 0; if (str_contains(cmd, EL_STR("id_rsa"))) { _if_result_96 = (60); } else { _if_result_96 = (0); } _if_result_96; });
-  el_val_t s8 = ({ el_val_t _if_result_97 = 0; if (str_contains(cmd, EL_STR(".ssh/"))) { _if_result_97 = (50); } else { _if_result_97 = (0); } _if_result_97; });
-  el_val_t s9 = ({ el_val_t _if_result_98 = 0; if (str_contains(cmd, EL_STR("crontab"))) { _if_result_98 = (30); } else { _if_result_98 = (0); } _if_result_98; });
-  el_val_t s10 = ({ el_val_t _if_result_99 = 0; if (str_contains(cmd, EL_STR("LaunchDaemon"))) { _if_result_99 = (40); } else { _if_result_99 = (0); } _if_result_99; });
-  el_val_t s11 = ({ el_val_t _if_result_100 = 0; if ((str_contains(cmd, EL_STR("curl")) && str_contains(cmd, EL_STR("bash")))) { _if_result_100 = (75); } else { _if_result_100 = (0); } _if_result_100; });
-  el_val_t s12 = ({ el_val_t _if_result_101 = 0; if ((str_contains(cmd, EL_STR("wget")) && str_contains(cmd, EL_STR("bash")))) { _if_result_101 = (75); } else { _if_result_101 = (0); } _if_result_101; });
-  el_val_t s13 = ({ el_val_t _if_result_102 = 0; if ((str_contains(cmd, EL_STR("curl")) && str_contains(cmd, EL_STR("| sh")))) { _if_result_102 = (60); } else { _if_result_102 = (0); } _if_result_102; });
-  el_val_t s14 = ({ el_val_t _if_result_103 = 0; if ((str_contains(cmd, EL_STR("base64")) && str_contains(cmd, EL_STR("curl")))) { _if_result_103 = (50); } else { _if_result_103 = (0); } _if_result_103; });
-  el_val_t s15 = ({ el_val_t _if_result_104 = 0; if (str_contains(cmd, EL_STR("mkfifo"))) { _if_result_104 = (50); } else { _if_result_104 = (0); } _if_result_104; });
-  el_val_t s16 = ({ el_val_t _if_result_105 = 0; if (str_contains(cmd, EL_STR("chmod +s"))) { _if_result_105 = (70); } else { _if_result_105 = (0); } _if_result_105; });
-  el_val_t s17 = ({ el_val_t _if_result_106 = 0; if (str_contains(cmd, EL_STR("chmod 4755"))) { _if_result_106 = (70); } else { _if_result_106 = (0); } _if_result_106; });
+  el_val_t s1 = ({ el_val_t _if_result_61 = 0; if (str_contains(cmd, EL_STR("nmap"))) { _if_result_61 = (30); } else { _if_result_61 = (0); } _if_result_61; });
+  el_val_t s2 = ({ el_val_t _if_result_62 = 0; if (str_contains(cmd, EL_STR("masscan"))) { _if_result_62 = (40); } else { _if_result_62 = (0); } _if_result_62; });
+  el_val_t s3 = ({ el_val_t _if_result_63 = 0; if (str_contains(cmd, EL_STR(" nc "))) { _if_result_63 = (20); } else { _if_result_63 = (0); } _if_result_63; });
+  el_val_t s4 = ({ el_val_t _if_result_64 = 0; if (str_contains(cmd, EL_STR("netcat"))) { _if_result_64 = (20); } else { _if_result_64 = (0); } _if_result_64; });
+  el_val_t s5 = ({ el_val_t _if_result_65 = 0; if (str_contains(cmd, EL_STR("/etc/shadow"))) { _if_result_65 = (80); } else { _if_result_65 = (0); } _if_result_65; });
+  el_val_t s6 = ({ el_val_t _if_result_66 = 0; if (str_contains(cmd, EL_STR("/etc/passwd"))) { _if_result_66 = (30); } else { _if_result_66 = (0); } _if_result_66; });
+  el_val_t s7 = ({ el_val_t _if_result_67 = 0; if (str_contains(cmd, EL_STR("id_rsa"))) { _if_result_67 = (60); } else { _if_result_67 = (0); } _if_result_67; });
+  el_val_t s8 = ({ el_val_t _if_result_68 = 0; if (str_contains(cmd, EL_STR(".ssh/"))) { _if_result_68 = (50); } else { _if_result_68 = (0); } _if_result_68; });
+  el_val_t s9 = ({ el_val_t _if_result_69 = 0; if (str_contains(cmd, EL_STR("crontab"))) { _if_result_69 = (30); } else { _if_result_69 = (0); } _if_result_69; });
+  el_val_t s10 = ({ el_val_t _if_result_70 = 0; if (str_contains(cmd, EL_STR("LaunchDaemon"))) { _if_result_70 = (40); } else { _if_result_70 = (0); } _if_result_70; });
+  el_val_t s11 = ({ el_val_t _if_result_71 = 0; if ((str_contains(cmd, EL_STR("curl")) && str_contains(cmd, EL_STR("bash")))) { _if_result_71 = (75); } else { _if_result_71 = (0); } _if_result_71; });
+  el_val_t s12 = ({ el_val_t _if_result_72 = 0; if ((str_contains(cmd, EL_STR("wget")) && str_contains(cmd, EL_STR("bash")))) { _if_result_72 = (75); } else { _if_result_72 = (0); } _if_result_72; });
+  el_val_t s13 = ({ el_val_t _if_result_73 = 0; if ((str_contains(cmd, EL_STR("curl")) && str_contains(cmd, EL_STR("| sh")))) { _if_result_73 = (60); } else { _if_result_73 = (0); } _if_result_73; });
+  el_val_t s14 = ({ el_val_t _if_result_74 = 0; if ((str_contains(cmd, EL_STR("base64")) && str_contains(cmd, EL_STR("curl")))) { _if_result_74 = (50); } else { _if_result_74 = (0); } _if_result_74; });
+  el_val_t s15 = ({ el_val_t _if_result_75 = 0; if (str_contains(cmd, EL_STR("mkfifo"))) { _if_result_75 = (50); } else { _if_result_75 = (0); } _if_result_75; });
+  el_val_t s16 = ({ el_val_t _if_result_76 = 0; if (str_contains(cmd, EL_STR("chmod +s"))) { _if_result_76 = (70); } else { _if_result_76 = (0); } _if_result_76; });
+  el_val_t s17 = ({ el_val_t _if_result_77 = 0; if (str_contains(cmd, EL_STR("chmod 4755"))) { _if_result_77 = (70); } else { _if_result_77 = (0); } _if_result_77; });
   return ((((((((((((((((s1 + s2) + s3) + s4) + s5) + s6) + s7) + s8) + s9) + s10) + s11) + s12) + s13) + s14) + s15) + s16) + s17);
   return 0;
 }
 
 el_val_t threat_score_path(el_val_t path) {
-  el_val_t s1 = ({ el_val_t _if_result_107 = 0; if (str_starts_with(path, EL_STR("/etc/"))) { _if_result_107 = (60); } else { _if_result_107 = (0); } _if_result_107; });
-  el_val_t s2 = ({ el_val_t _if_result_108 = 0; if (str_contains(path, EL_STR("/.ssh/"))) { _if_result_108 = (70); } else { _if_result_108 = (0); } _if_result_108; });
-  el_val_t s3 = ({ el_val_t _if_result_109 = 0; if (str_contains(path, EL_STR("/LaunchDaemons/"))) { _if_result_109 = (80); } else { _if_result_109 = (0); } _if_result_109; });
-  el_val_t s4 = ({ el_val_t _if_result_110 = 0; if (str_contains(path, EL_STR("/LaunchAgents/"))) { _if_result_110 = (40); } else { _if_result_110 = (0); } _if_result_110; });
-  el_val_t s5 = ({ el_val_t _if_result_111 = 0; if (str_contains(path, EL_STR("/cron"))) { _if_result_111 = (60); } else { _if_result_111 = (0); } _if_result_111; });
-  el_val_t s6 = ({ el_val_t _if_result_112 = 0; if (str_contains(path, EL_STR("/.bashrc"))) { _if_result_112 = (35); } else { _if_result_112 = (0); } _if_result_112; });
-  el_val_t s7 = ({ el_val_t _if_result_113 = 0; if (str_contains(path, EL_STR("/.zshrc"))) { _if_result_113 = (35); } else { _if_result_113 = (0); } _if_result_113; });
-  el_val_t s8 = ({ el_val_t _if_result_114 = 0; if (str_contains(path, EL_STR("/.profile"))) { _if_result_114 = (35); } else { _if_result_114 = (0); } _if_result_114; });
-  el_val_t s9 = ({ el_val_t _if_result_115 = 0; if (str_starts_with(path, EL_STR("/usr/"))) { _if_result_115 = (50); } else { _if_result_115 = (0); } _if_result_115; });
-  el_val_t s10 = ({ el_val_t _if_result_116 = 0; if (str_starts_with(path, EL_STR("/bin/"))) { _if_result_116 = (70); } else { _if_result_116 = (0); } _if_result_116; });
-  el_val_t s11 = ({ el_val_t _if_result_117 = 0; if (str_starts_with(path, EL_STR("/sbin/"))) { _if_result_117 = (70); } else { _if_result_117 = (0); } _if_result_117; });
+  el_val_t s1 = ({ el_val_t _if_result_78 = 0; if (str_starts_with(path, EL_STR("/etc/"))) { _if_result_78 = (60); } else { _if_result_78 = (0); } _if_result_78; });
+  el_val_t s2 = ({ el_val_t _if_result_79 = 0; if (str_contains(path, EL_STR("/.ssh/"))) { _if_result_79 = (70); } else { _if_result_79 = (0); } _if_result_79; });
+  el_val_t s3 = ({ el_val_t _if_result_80 = 0; if (str_contains(path, EL_STR("/LaunchDaemons/"))) { _if_result_80 = (80); } else { _if_result_80 = (0); } _if_result_80; });
+  el_val_t s4 = ({ el_val_t _if_result_81 = 0; if (str_contains(path, EL_STR("/LaunchAgents/"))) { _if_result_81 = (40); } else { _if_result_81 = (0); } _if_result_81; });
+  el_val_t s5 = ({ el_val_t _if_result_82 = 0; if (str_contains(path, EL_STR("/cron"))) { _if_result_82 = (60); } else { _if_result_82 = (0); } _if_result_82; });
+  el_val_t s6 = ({ el_val_t _if_result_83 = 0; if (str_contains(path, EL_STR("/.bashrc"))) { _if_result_83 = (35); } else { _if_result_83 = (0); } _if_result_83; });
+  el_val_t s7 = ({ el_val_t _if_result_84 = 0; if (str_contains(path, EL_STR("/.zshrc"))) { _if_result_84 = (35); } else { _if_result_84 = (0); } _if_result_84; });
+  el_val_t s8 = ({ el_val_t _if_result_85 = 0; if (str_contains(path, EL_STR("/.profile"))) { _if_result_85 = (35); } else { _if_result_85 = (0); } _if_result_85; });
+  el_val_t s9 = ({ el_val_t _if_result_86 = 0; if (str_starts_with(path, EL_STR("/usr/"))) { _if_result_86 = (50); } else { _if_result_86 = (0); } _if_result_86; });
+  el_val_t s10 = ({ el_val_t _if_result_87 = 0; if (str_starts_with(path, EL_STR("/bin/"))) { _if_result_87 = (70); } else { _if_result_87 = (0); } _if_result_87; });
+  el_val_t s11 = ({ el_val_t _if_result_88 = 0; if (str_starts_with(path, EL_STR("/sbin/"))) { _if_result_88 = (70); } else { _if_result_88 = (0); } _if_result_88; });
   return ((((((((((s1 + s2) + s3) + s4) + s5) + s6) + s7) + s8) + s9) + s10) + s11);
   return 0;
 }
 
 el_val_t threat_score_history(el_val_t history) {
-  el_val_t s1 = ({ el_val_t _if_result_118 = 0; if (str_contains(history, EL_STR("port scan"))) { _if_result_118 = (15); } else { _if_result_118 = (0); } _if_result_118; });
-  el_val_t s2 = ({ el_val_t _if_result_119 = 0; if (str_contains(history, EL_STR("enumerate"))) { _if_result_119 = (10); } else { _if_result_119 = (0); } _if_result_119; });
-  el_val_t s3 = ({ el_val_t _if_result_120 = 0; if (str_contains(history, EL_STR("exploit"))) { _if_result_120 = (20); } else { _if_result_120 = (0); } _if_result_120; });
-  el_val_t s4 = ({ el_val_t _if_result_121 = 0; if (str_contains(history, EL_STR("payload"))) { _if_result_121 = (15); } else { _if_result_121 = (0); } _if_result_121; });
-  el_val_t s5 = ({ el_val_t _if_result_122 = 0; if (str_contains(history, EL_STR("persistence"))) { _if_result_122 = (15); } else { _if_result_122 = (0); } _if_result_122; });
-  el_val_t s6 = ({ el_val_t _if_result_123 = 0; if (str_contains(history, EL_STR("lateral movement"))) { _if_result_123 = (25); } else { _if_result_123 = (0); } _if_result_123; });
-  el_val_t s7 = ({ el_val_t _if_result_124 = 0; if (str_contains(history, EL_STR("privilege escalation"))) { _if_result_124 = (25); } else { _if_result_124 = (0); } _if_result_124; });
-  el_val_t s8 = ({ el_val_t _if_result_125 = 0; if (str_contains(history, EL_STR("reverse shell"))) { _if_result_125 = (40); } else { _if_result_125 = (0); } _if_result_125; });
-  el_val_t s9 = ({ el_val_t _if_result_126 = 0; if (str_contains(history, EL_STR("bind shell"))) { _if_result_126 = (40); } else { _if_result_126 = (0); } _if_result_126; });
-  el_val_t s10 = ({ el_val_t _if_result_127 = 0; if (str_contains(history, EL_STR("command and control"))) { _if_result_127 = (35); } else { _if_result_127 = (0); } _if_result_127; });
-  el_val_t s11 = ({ el_val_t _if_result_128 = 0; if (str_contains(history, EL_STR("self-replicate"))) { _if_result_128 = (45); } else { _if_result_128 = (0); } _if_result_128; });
-  el_val_t s12 = ({ el_val_t _if_result_129 = 0; if (str_contains(history, EL_STR("propagat"))) { _if_result_129 = (20); } else { _if_result_129 = (0); } _if_result_129; });
-  el_val_t s13 = ({ el_val_t _if_result_130 = 0; if (str_contains(history, EL_STR("ransomware"))) { _if_result_130 = (30); } else { _if_result_130 = (0); } _if_result_130; });
-  el_val_t s14 = ({ el_val_t _if_result_131 = 0; if (str_contains(history, EL_STR("encrypt files"))) { _if_result_131 = (40); } else { _if_result_131 = (0); } _if_result_131; });
-  el_val_t s15 = ({ el_val_t _if_result_132 = 0; if (str_contains(history, EL_STR("exfiltrat"))) { _if_result_132 = (35); } else { _if_result_132 = (0); } _if_result_132; });
-  el_val_t s16 = ({ el_val_t _if_result_133 = 0; if (str_contains(history, EL_STR("zero-day"))) { _if_result_133 = (20); } else { _if_result_133 = (0); } _if_result_133; });
-  el_val_t s17 = ({ el_val_t _if_result_134 = 0; if (str_contains(history, EL_STR("rootkit"))) { _if_result_134 = (45); } else { _if_result_134 = (0); } _if_result_134; });
-  el_val_t s18 = ({ el_val_t _if_result_135 = 0; if (str_contains(history, EL_STR("keylogger"))) { _if_result_135 = (45); } else { _if_result_135 = (0); } _if_result_135; });
-  el_val_t s19 = ({ el_val_t _if_result_136 = 0; if (str_contains(history, EL_STR("botnet"))) { _if_result_136 = (40); } else { _if_result_136 = (0); } _if_result_136; });
-  el_val_t s20 = ({ el_val_t _if_result_137 = 0; if (str_contains(history, EL_STR("malware"))) { _if_result_137 = (15); } else { _if_result_137 = (0); } _if_result_137; });
+  el_val_t s1 = ({ el_val_t _if_result_89 = 0; if (str_contains(history, EL_STR("port scan"))) { _if_result_89 = (15); } else { _if_result_89 = (0); } _if_result_89; });
+  el_val_t s2 = ({ el_val_t _if_result_90 = 0; if (str_contains(history, EL_STR("enumerate"))) { _if_result_90 = (10); } else { _if_result_90 = (0); } _if_result_90; });
+  el_val_t s3 = ({ el_val_t _if_result_91 = 0; if (str_contains(history, EL_STR("exploit"))) { _if_result_91 = (20); } else { _if_result_91 = (0); } _if_result_91; });
+  el_val_t s4 = ({ el_val_t _if_result_92 = 0; if (str_contains(history, EL_STR("payload"))) { _if_result_92 = (15); } else { _if_result_92 = (0); } _if_result_92; });
+  el_val_t s5 = ({ el_val_t _if_result_93 = 0; if (str_contains(history, EL_STR("persistence"))) { _if_result_93 = (15); } else { _if_result_93 = (0); } _if_result_93; });
+  el_val_t s6 = ({ el_val_t _if_result_94 = 0; if (str_contains(history, EL_STR("lateral movement"))) { _if_result_94 = (25); } else { _if_result_94 = (0); } _if_result_94; });
+  el_val_t s7 = ({ el_val_t _if_result_95 = 0; if (str_contains(history, EL_STR("privilege escalation"))) { _if_result_95 = (25); } else { _if_result_95 = (0); } _if_result_95; });
+  el_val_t s8 = ({ el_val_t _if_result_96 = 0; if (str_contains(history, EL_STR("reverse shell"))) { _if_result_96 = (40); } else { _if_result_96 = (0); } _if_result_96; });
+  el_val_t s9 = ({ el_val_t _if_result_97 = 0; if (str_contains(history, EL_STR("bind shell"))) { _if_result_97 = (40); } else { _if_result_97 = (0); } _if_result_97; });
+  el_val_t s10 = ({ el_val_t _if_result_98 = 0; if (str_contains(history, EL_STR("command and control"))) { _if_result_98 = (35); } else { _if_result_98 = (0); } _if_result_98; });
+  el_val_t s11 = ({ el_val_t _if_result_99 = 0; if (str_contains(history, EL_STR("self-replicate"))) { _if_result_99 = (45); } else { _if_result_99 = (0); } _if_result_99; });
+  el_val_t s12 = ({ el_val_t _if_result_100 = 0; if (str_contains(history, EL_STR("propagat"))) { _if_result_100 = (20); } else { _if_result_100 = (0); } _if_result_100; });
+  el_val_t s13 = ({ el_val_t _if_result_101 = 0; if (str_contains(history, EL_STR("ransomware"))) { _if_result_101 = (30); } else { _if_result_101 = (0); } _if_result_101; });
+  el_val_t s14 = ({ el_val_t _if_result_102 = 0; if (str_contains(history, EL_STR("encrypt files"))) { _if_result_102 = (40); } else { _if_result_102 = (0); } _if_result_102; });
+  el_val_t s15 = ({ el_val_t _if_result_103 = 0; if (str_contains(history, EL_STR("exfiltrat"))) { _if_result_103 = (35); } else { _if_result_103 = (0); } _if_result_103; });
+  el_val_t s16 = ({ el_val_t _if_result_104 = 0; if (str_contains(history, EL_STR("zero-day"))) { _if_result_104 = (20); } else { _if_result_104 = (0); } _if_result_104; });
+  el_val_t s17 = ({ el_val_t _if_result_105 = 0; if (str_contains(history, EL_STR("rootkit"))) { _if_result_105 = (45); } else { _if_result_105 = (0); } _if_result_105; });
+  el_val_t s18 = ({ el_val_t _if_result_106 = 0; if (str_contains(history, EL_STR("keylogger"))) { _if_result_106 = (45); } else { _if_result_106 = (0); } _if_result_106; });
+  el_val_t s19 = ({ el_val_t _if_result_107 = 0; if (str_contains(history, EL_STR("botnet"))) { _if_result_107 = (40); } else { _if_result_107 = (0); } _if_result_107; });
+  el_val_t s20 = ({ el_val_t _if_result_108 = 0; if (str_contains(history, EL_STR("malware"))) { _if_result_108 = (15); } else { _if_result_108 = (0); } _if_result_108; });
   return (((((((((((((((((((s1 + s2) + s3) + s4) + s5) + s6) + s7) + s8) + s9) + s10) + s11) + s12) + s13) + s14) + s15) + s16) + s17) + s18) + s19) + s20);
   return 0;
 }
 
 el_val_t threat_trajectory_check(el_val_t tool_name, el_val_t tool_input) {
   el_val_t history = state_get(EL_STR("agentic_conv_history"));
-  el_val_t computed_tool_score = ({ el_val_t _if_result_138 = 0; if (str_eq(tool_name, EL_STR("run_command"))) { el_val_t cmd = json_get(tool_input, EL_STR("command")); _if_result_138 = (threat_score_command(cmd)); } else { _if_result_138 = (({ el_val_t _if_result_139 = 0; if ((str_eq(tool_name, EL_STR("write_file")) || str_eq(tool_name, EL_STR("edit_file")))) { el_val_t path = json_get(tool_input, EL_STR("path")); _if_result_139 = (threat_score_path(path)); } else { _if_result_139 = (0); } _if_result_139; })); } _if_result_138; });
+  el_val_t computed_tool_score = ({ el_val_t _if_result_109 = 0; if (str_eq(tool_name, EL_STR("run_command"))) { el_val_t cmd = json_get(tool_input, EL_STR("command")); _if_result_109 = (threat_score_command(cmd)); } else { _if_result_109 = (({ el_val_t _if_result_110 = 0; if ((str_eq(tool_name, EL_STR("write_file")) || str_eq(tool_name, EL_STR("edit_file")))) { el_val_t path = json_get(tool_input, EL_STR("path")); _if_result_110 = (threat_score_path(path)); } else { _if_result_110 = (0); } _if_result_110; })); } _if_result_109; });
   el_val_t history_score = threat_score_history(history);
   el_val_t history_contrib = (history_score / 3);
   el_val_t combined = (computed_tool_score + history_contrib);
   el_val_t should_log = (combined >= 40);
   if (should_log) {
     el_val_t ts = time_now();
-    el_val_t authorized_str = ({ el_val_t _if_result_140 = 0; if (security_research_authorized()) { _if_result_140 = (EL_STR("true")); } else { _if_result_140 = (EL_STR("false")); } _if_result_140; });
+    el_val_t authorized_str = ({ el_val_t _if_result_111 = 0; if (security_research_authorized()) { _if_result_111 = (EL_STR("true")); } else { _if_result_111 = (EL_STR("false")); } _if_result_111; });
     el_val_t log_content = el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(el_str_concat(EL_STR("{\"event\":\"threat_check\",\"tool\":\""), tool_name), EL_STR("\",\"score\":")), int_to_str(combined)), EL_STR(",\"tool_score\":")), int_to_str(computed_tool_score)), EL_STR(",\"history_score\":")), int_to_str(history_score)), EL_STR(",\"authorized\":")), authorized_str), EL_STR(",\"ts\":")), int_to_str(ts)), EL_STR("}"));
     el_val_t log_tags = EL_STR("[\"security-audit\",\"threat-check\"]");
     el_val_t discard = mem_remember(log_content, log_tags);
@@ -863,7 +758,7 @@ el_val_t threat_history_append(el_val_t text) {
   el_val_t safe_text = str_to_lower(text);
   el_val_t combined = el_str_concat(el_str_concat(current, EL_STR(" ")), safe_text);
   el_val_t len = str_len(combined);
-  el_val_t trimmed = ({ el_val_t _if_result_141 = 0; if ((len > 2000)) { _if_result_141 = (str_slice(combined, (len - 2000), len)); } else { _if_result_141 = (combined); } _if_result_141; });
+  el_val_t trimmed = ({ el_val_t _if_result_112 = 0; if ((len > 2000)) { _if_result_112 = (str_slice(combined, (len - 2000), len)); } else { _if_result_112 = (combined); } _if_result_112; });
   state_set(EL_STR("agentic_conv_history"), trimmed);
   return 0;
 }

dist/elp-c-decls.h

@@ -5,6 +5,15 @@ el_val_t add_punct(el_val_t s, el_val_t intent);
 el_val_t add_to_seen(el_val_t seen, el_val_t node_id);
 el_val_t aff_try_slot(el_val_t slot_json, el_val_t aff_7d_ts, el_val_t acc_key);
 el_val_t affective_context_prefix(void);
+el_val_t is_utility_request(el_val_t body, el_val_t session_id);
+el_val_t operator_identity_block(void);
+el_val_t provenance_add_sources(el_val_t block, el_val_t btype, el_val_t has_cit, el_val_t cit_raw, el_val_t acc);
+el_val_t provenance_names(el_val_t tools_used);
+el_val_t provenance_scan_urls(el_val_t arr, el_val_t acc);
+el_val_t text_join_sep(el_val_t accumulated, el_val_t incoming, el_val_t after_interruption);
+el_val_t receipt_rule(void);
+el_val_t receipt_strip(el_val_t s);
+el_val_t tool_receipt(el_val_t tools_used, el_val_t sources);
 el_val_t agent_number(el_val_t agent);
 el_val_t agent_person(el_val_t agent);
 el_val_t agent_workspace_root(void);
@@ -20,8 +29,8 @@ el_val_t akk_alaku_present(el_val_t slot);
 el_val_t akk_amaru_perfect(el_val_t slot);
 el_val_t akk_amaru_present(el_val_t slot);
 el_val_t akk_amaru_stative(el_val_t slot);
-el_val_t akk_conjugate(el_val_t verb, el_val_t tense, el_val_t person, el_val_t number);
 el_val_t akk_conjugate_copula(el_val_t tense, el_val_t slot);
+el_val_t akk_conjugate(el_val_t verb, el_val_t tense, el_val_t person, el_val_t number);
 el_val_t akk_copula_present(el_val_t slot);
 el_val_t akk_copula_stative(el_val_t slot);
 el_val_t akk_decline(el_val_t noun, el_val_t gram_case, el_val_t number);
@@ -39,25 +48,25 @@ el_val_t akk_qabu_stative(el_val_t slot);
 el_val_t akk_regular_perfect(el_val_t stem, el_val_t slot);
 el_val_t akk_regular_present(el_val_t stem, el_val_t slot);
 el_val_t akk_regular_stative(el_val_t stem, el_val_t slot);
-el_val_t akk_slot(el_val_t person, el_val_t number);
 el_val_t akk_slot_g(el_val_t person, el_val_t gender, el_val_t number);
+el_val_t akk_slot(el_val_t person, el_val_t number);
 el_val_t akk_str_drop_last(el_val_t s, el_val_t n);
 el_val_t akk_str_ends(el_val_t s, el_val_t suf);
 el_val_t akk_str_len(el_val_t s);
 el_val_t akk_strip_nom(el_val_t noun);
-el_val_t ang_article(el_val_t gender, el_val_t gram_case, el_val_t number);
 el_val_t ang_article_feminine(el_val_t gram_case, el_val_t number);
 el_val_t ang_article_masculine(el_val_t gram_case, el_val_t number);
 el_val_t ang_article_neuter(el_val_t gram_case, el_val_t number);
+el_val_t ang_article(el_val_t gender, el_val_t gram_case, el_val_t number);
 el_val_t ang_beon_present(el_val_t slot);
 el_val_t ang_conjugate(el_val_t verb, el_val_t tense, el_val_t person, el_val_t number);
 el_val_t ang_cuman_past(el_val_t slot);
 el_val_t ang_cuman_present(el_val_t slot);
 el_val_t ang_declension(el_val_t noun, el_val_t gender);
-el_val_t ang_decline(el_val_t noun, el_val_t gram_case, el_val_t number, el_val_t gender);
 el_val_t ang_decline_strong_masc(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t ang_decline_strong_neut(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t ang_decline_weak(el_val_t noun, el_val_t gram_case, el_val_t number);
+el_val_t ang_decline(el_val_t noun, el_val_t gram_case, el_val_t number, el_val_t gender);
 el_val_t ang_don_past(el_val_t slot);
 el_val_t ang_don_present(el_val_t slot);
 el_val_t ang_gan_past(el_val_t slot);
@@ -76,10 +85,10 @@ el_val_t ang_seon_present(el_val_t slot);
 el_val_t ang_slot(el_val_t person, el_val_t number);
 el_val_t ang_str_drop_last(el_val_t s, el_val_t n);
 el_val_t ang_str_ends(el_val_t s, el_val_t suf);
-el_val_t ang_str_last2(el_val_t s);
 el_val_t ang_str_last_char(el_val_t s);
-el_val_t ang_weak_past(el_val_t stem, el_val_t slot);
+el_val_t ang_str_last2(el_val_t s);
 el_val_t ang_weak_past_stem(el_val_t stem);
+el_val_t ang_weak_past(el_val_t stem, el_val_t slot);
 el_val_t ang_weak_present_ending(el_val_t slot);
 el_val_t ang_weak_stem(el_val_t verb);
 el_val_t ang_wesan_past(el_val_t slot);
@@ -88,35 +97,30 @@ el_val_t ang_willan_past(el_val_t slot);
 el_val_t ang_willan_present(el_val_t slot);
 el_val_t ang_witan_past(el_val_t slot);
 el_val_t ang_witan_present(el_val_t slot);
-el_val_t api_compact_activated(el_val_t raw, el_val_t max_items, el_val_t snip);
-el_val_t api_compact_node(el_val_t node, el_val_t snip);
-el_val_t api_compact_node_array(el_val_t raw, el_val_t max_items, el_val_t snip);
-el_val_t api_err(el_val_t msg);
 el_val_t api_err_protected(el_val_t id);
+el_val_t api_err(el_val_t msg);
 el_val_t api_json_escape(el_val_t s);
 el_val_t api_nonempty(el_val_t s);
 el_val_t api_not_persisted(el_val_t id);
-el_val_t api_num_or_zero(el_val_t obj, el_val_t key);
 el_val_t api_ok(el_val_t extra);
 el_val_t api_or_empty(el_val_t s);
 el_val_t api_persisted(el_val_t id);
 el_val_t api_query_int(el_val_t path, el_val_t key, el_val_t default_val);
 el_val_t api_query_param(el_val_t path, el_val_t key);
-el_val_t api_utf8_trunc(el_val_t s, el_val_t n);
 el_val_t ar_case_ending(el_val_t kase, el_val_t definite);
-el_val_t ar_conjugate(el_val_t verb, el_val_t tense, el_val_t person, el_val_t gender, el_val_t number);
 el_val_t ar_conjugate_form1(el_val_t past_base, el_val_t present_stem, el_val_t tense, el_val_t slot);
+el_val_t ar_conjugate(el_val_t verb, el_val_t tense, el_val_t person, el_val_t gender, el_val_t number);
 el_val_t ar_definite_article(el_val_t noun);
 el_val_t ar_gender(el_val_t noun);
 el_val_t ar_imperfect_prefix(el_val_t slot);
 el_val_t ar_imperfect_suffix(el_val_t slot);
-el_val_t ar_irregular(el_val_t verb, el_val_t tense, el_val_t slot);
 el_val_t ar_irregular_araada(el_val_t slot, el_val_t tense);
 el_val_t ar_irregular_istata(el_val_t slot, el_val_t tense);
 el_val_t ar_irregular_jaa(el_val_t slot, el_val_t tense);
 el_val_t ar_irregular_kaana(el_val_t slot, el_val_t tense);
 el_val_t ar_irregular_qaala(el_val_t slot, el_val_t tense);
 el_val_t ar_irregular_raaa(el_val_t slot, el_val_t tense);
+el_val_t ar_irregular(el_val_t verb, el_val_t tense, el_val_t slot);
 el_val_t ar_is_sun_letter(el_val_t c);
 el_val_t ar_masc_pl_ending(el_val_t kase);
 el_val_t ar_noun_form(el_val_t noun, el_val_t gender, el_val_t kase, el_val_t number, el_val_t definite);
@@ -156,8 +160,12 @@ el_val_t cmd_abs_escape_at(el_val_t cmd, el_val_t root, el_val_t needle);
 el_val_t connectd_get(el_val_t suffix);
 el_val_t connectd_post(el_val_t suffix, el_val_t body);
 el_val_t connector_tools_json(void);
-el_val_t conv_history_load(void);
-el_val_t conv_history_persist(el_val_t hist);
+el_val_t conv_hist_key(el_val_t session_id);
+el_val_t conv_hist_label(el_val_t session_id);
+el_val_t conv_history_block(el_val_t session_id);
+el_val_t conv_history_load(el_val_t session_id);
+el_val_t conv_history_persist(el_val_t session_id, el_val_t hist);
+el_val_t conv_history_record(el_val_t session_id, el_val_t user_msg, el_val_t assistant_msg, el_val_t receipt);
 el_val_t cop_article(el_val_t gender, el_val_t number, el_val_t definite);
 el_val_t cop_bwk_future(el_val_t prefix);
 el_val_t cop_bwk_perfect(el_val_t prefix);
@@ -179,8 +187,8 @@ el_val_t cop_map_canonical(el_val_t verb);
 el_val_t cop_nau_future(el_val_t prefix);
 el_val_t cop_nau_perfect(el_val_t prefix);
 el_val_t cop_nau_present(el_val_t prefix);
-el_val_t cop_noun_phrase(el_val_t noun, el_val_t gram_case, el_val_t number, el_val_t definite);
 el_val_t cop_noun_phrase_gendered(el_val_t noun, el_val_t gram_case, el_val_t number, el_val_t definite, el_val_t gender);
+el_val_t cop_noun_phrase(el_val_t noun, el_val_t gram_case, el_val_t number, el_val_t definite);
 el_val_t cop_regular_future(el_val_t prefix, el_val_t stem);
 el_val_t cop_regular_perfect(el_val_t prefix, el_val_t stem);
 el_val_t cop_regular_present(el_val_t prefix, el_val_t stem);
@@ -190,16 +198,16 @@ el_val_t cop_shwpe_present(el_val_t prefix);
 el_val_t cop_slot(el_val_t person, el_val_t number);
 el_val_t cop_str_ends(el_val_t s, el_val_t suf);
 el_val_t cop_str_len(el_val_t s);
-el_val_t cop_subject_prefix(el_val_t person, el_val_t number);
 el_val_t cop_subject_prefix_gendered(el_val_t person, el_val_t gender, el_val_t number);
+el_val_t cop_subject_prefix(el_val_t person, el_val_t number);
 el_val_t current_engine_note(el_val_t model);
 el_val_t de_adj_ending(el_val_t gender, el_val_t gram_case, el_val_t number, el_val_t article_type);
-el_val_t de_article(el_val_t gender, el_val_t gram_case, el_val_t number, el_val_t definite);
 el_val_t de_article_def(el_val_t gender, el_val_t gram_case, el_val_t number);
 el_val_t de_article_indef(el_val_t gender, el_val_t gram_case, el_val_t number);
+el_val_t de_article(el_val_t gender, el_val_t gram_case, el_val_t number, el_val_t definite);
 el_val_t de_case_ending(el_val_t noun, el_val_t gender, el_val_t gram_case, el_val_t number);
-el_val_t de_conjugate(el_val_t verb, el_val_t tense, el_val_t person, el_val_t number);
 el_val_t de_conjugate_weak(el_val_t stem, el_val_t tense, el_val_t person, el_val_t number);
+el_val_t de_conjugate(el_val_t verb, el_val_t tense, el_val_t person, el_val_t number);
 el_val_t de_irregular_present(el_val_t verb, el_val_t person, el_val_t number);
 el_val_t de_norm_number(el_val_t number);
 el_val_t de_norm_person(el_val_t person);
@@ -209,15 +217,12 @@ el_val_t dharma_network_state(void);
 el_val_t dharma_registry(void);
 el_val_t dispatch_tool(el_val_t tool_name, el_val_t tool_input);
 el_val_t distill_transcript(el_val_t transcript);
+el_val_t egy_conjugate_copula(el_val_t tense, el_val_t slot);
+el_val_t egy_conjugate_pronoun(el_val_t person, el_val_t number);
+el_val_t egy_conjugate(el_val_t verb, el_val_t tense, el_val_t person, el_val_t number);
 el_val_t egy_Dd_future(el_val_t slot);
 el_val_t egy_Dd_past(el_val_t slot);
 el_val_t egy_Dd_present(el_val_t slot);
-el_val_t egy_Sm_future(el_val_t slot);
-el_val_t egy_Sm_past(el_val_t slot);
-el_val_t egy_Sm_present(el_val_t slot);
-el_val_t egy_conjugate(el_val_t verb, el_val_t tense, el_val_t person, el_val_t number);
-el_val_t egy_conjugate_copula(el_val_t tense, el_val_t slot);
-el_val_t egy_conjugate_pronoun(el_val_t person, el_val_t number);
 el_val_t egy_decline(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t egy_drop(el_val_t s, el_val_t n);
 el_val_t egy_fem(el_val_t noun);
@@ -241,8 +246,11 @@ el_val_t egy_regular_present(el_val_t stem, el_val_t slot);
 el_val_t egy_sdm_future(el_val_t slot);
 el_val_t egy_sdm_past(el_val_t slot);
 el_val_t egy_sdm_present(el_val_t slot);
-el_val_t egy_slot(el_val_t person, el_val_t number);
 el_val_t egy_slot_with_gender(el_val_t person, el_val_t gender, el_val_t number);
+el_val_t egy_slot(el_val_t person, el_val_t number);
+el_val_t egy_Sm_future(el_val_t slot);
+el_val_t egy_Sm_past(el_val_t slot);
+el_val_t egy_Sm_present(el_val_t slot);
 el_val_t egy_str_ends(el_val_t s, el_val_t suf);
 el_val_t egy_str_len(el_val_t s);
 el_val_t egy_suffix_pronoun(el_val_t slot);
@@ -263,9 +271,9 @@ el_val_t en_verb_3sg(el_val_t base);
 el_val_t en_verb_form(el_val_t base, el_val_t tense, el_val_t person, el_val_t number);
 el_val_t en_verb_gerund(el_val_t base);
 el_val_t en_verb_past(el_val_t base);
-el_val_t engram_compile(el_val_t intent);
 el_val_t engram_compile_multi(el_val_t topic);
 el_val_t engram_compile_ranked(el_val_t nodes_json, el_val_t max_nodes);
+el_val_t engram_compile(el_val_t intent);
 el_val_t engram_dedup_nodes(el_val_t nodes_json);
 el_val_t engram_detect_recall_intent(el_val_t message);
 el_val_t engram_extract_entities(el_val_t message);
@@ -331,9 +339,9 @@ el_val_t es_starts_with_stressed_a(el_val_t noun);
 el_val_t es_stem(el_val_t base);
 el_val_t es_str_drop_last(el_val_t s, el_val_t n);
 el_val_t es_str_ends(el_val_t s, el_val_t suf);
+el_val_t es_str_last_char(el_val_t s);
 el_val_t es_str_last2(el_val_t s);
 el_val_t es_str_last3(el_val_t s);
-el_val_t es_str_last_char(el_val_t s);
 el_val_t es_verb_class(el_val_t base);
 el_val_t extract_dim(el_val_t content, el_val_t key);
 el_val_t fi_apply_case(el_val_t noun, el_val_t gram_case, el_val_t number);
@@ -376,8 +384,8 @@ el_val_t fr_slot(el_val_t person, el_val_t number);
 el_val_t fr_stem(el_val_t base);
 el_val_t fr_str_drop_last(el_val_t s, el_val_t n);
 el_val_t fr_str_ends(el_val_t s, el_val_t suf);
-el_val_t fr_str_last2(el_val_t s);
 el_val_t fr_str_last_char(el_val_t s);
+el_val_t fr_str_last2(el_val_t s);
 el_val_t fr_subject_starts_vowel(el_val_t subject);
 el_val_t fr_uses_etre(el_val_t verb);
 el_val_t fr_verb_ends_vowel(el_val_t verb_form);
@@ -399,9 +407,9 @@ el_val_t fro_conj3_future(el_val_t verb, el_val_t slot);
 el_val_t fro_conj3_past(el_val_t stem, el_val_t slot);
 el_val_t fro_conj3_present(el_val_t stem, el_val_t slot);
 el_val_t fro_conjugate(el_val_t verb, el_val_t tense, el_val_t person, el_val_t number);
-el_val_t fro_decline(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t fro_decline_fem(el_val_t noun, el_val_t number);
 el_val_t fro_decline_masc(el_val_t noun, el_val_t gram_case, el_val_t number);
+el_val_t fro_decline(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t fro_drop(el_val_t s, el_val_t n);
 el_val_t fro_estre_future(el_val_t slot);
 el_val_t fro_estre_past(el_val_t slot);
@@ -419,15 +427,15 @@ el_val_t fro_venir_past(el_val_t slot);
 el_val_t fro_venir_present(el_val_t slot);
 el_val_t fro_verb_class(el_val_t verb);
 el_val_t fro_verb_stem(el_val_t verb, el_val_t vclass);
-el_val_t generate(el_val_t semantic_form_json);
-el_val_t generate_frame(el_val_t frame);
 el_val_t generate_frame_lang(el_val_t frame, el_val_t lang_code);
+el_val_t generate_frame(el_val_t frame);
 el_val_t generate_lang(el_val_t semantic_form_json, el_val_t lang_code);
 el_val_t generate_tree(el_val_t rule_id_str, el_val_t slots);
+el_val_t generate(el_val_t semantic_form_json);
 el_val_t get_rules(void);
 el_val_t get_vocab(void);
-el_val_t gez_conjugate(el_val_t verb, el_val_t tense, el_val_t person, el_val_t number);
 el_val_t gez_conjugate_copula(el_val_t tense, el_val_t slot);
+el_val_t gez_conjugate(el_val_t verb, el_val_t tense, el_val_t person, el_val_t number);
 el_val_t gez_decline(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t gez_generic_imperfect(el_val_t base3sg, el_val_t slot);
 el_val_t gez_generic_perfect(el_val_t base3sg, el_val_t slot);
@@ -446,13 +454,12 @@ el_val_t gez_qwl_imperfect(el_val_t slot);
 el_val_t gez_qwl_perfect(el_val_t slot);
 el_val_t gez_ray_imperfect(el_val_t slot);
 el_val_t gez_ray_perfect(el_val_t slot);
-el_val_t gez_slot(el_val_t person, el_val_t number);
 el_val_t gez_slot_g(el_val_t person, el_val_t gender, el_val_t number);
+el_val_t gez_slot(el_val_t person, el_val_t number);
 el_val_t gez_str_drop_last(el_val_t s, el_val_t n);
 el_val_t gez_str_ends(el_val_t s, el_val_t suf);
 el_val_t gez_str_len(el_val_t s);
 el_val_t goh_conjugate(el_val_t verb, el_val_t tense, el_val_t person, el_val_t number);
-el_val_t goh_decline(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t goh_decline_fem_o_pl(el_val_t stem, el_val_t gram_case);
 el_val_t goh_decline_fem_o_sg(el_val_t stem, el_val_t gram_case);
 el_val_t goh_decline_masc_a_pl(el_val_t stem, el_val_t gram_case);
@@ -461,6 +468,7 @@ el_val_t goh_decline_masc_n_pl(el_val_t stem, el_val_t gram_case);
 el_val_t goh_decline_masc_n_sg(el_val_t stem, el_val_t gram_case);
 el_val_t goh_decline_neut_a_pl(el_val_t stem, el_val_t gram_case);
 el_val_t goh_decline_neut_a_sg(el_val_t stem, el_val_t gram_case);
+el_val_t goh_decline(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t goh_demo_article(el_val_t stype, el_val_t number);
 el_val_t goh_drop(el_val_t s, el_val_t n);
 el_val_t goh_extract_stem(el_val_t noun, el_val_t stype);
@@ -485,13 +493,13 @@ el_val_t goh_weak_present(el_val_t stem, el_val_t slot);
 el_val_t goh_wesan_past(el_val_t slot);
 el_val_t goh_wesan_present(el_val_t slot);
 el_val_t got_conjugate(el_val_t verb, el_val_t tense, el_val_t person, el_val_t number);
-el_val_t got_decline(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t got_decline_a_stem_pl(el_val_t stem, el_val_t gram_case);
 el_val_t got_decline_a_stem_sg(el_val_t stem, el_val_t gram_case);
 el_val_t got_decline_n_stem_pl(el_val_t stem, el_val_t gram_case);
 el_val_t got_decline_n_stem_sg(el_val_t stem, el_val_t gram_case);
 el_val_t got_decline_o_stem_pl(el_val_t stem, el_val_t gram_case);
 el_val_t got_decline_o_stem_sg(el_val_t stem, el_val_t gram_case);
+el_val_t got_decline(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t got_demo_article(el_val_t stype);
 el_val_t got_extract_stem(el_val_t noun, el_val_t stype);
 el_val_t got_gaggan_past(el_val_t slot);
@@ -524,17 +532,17 @@ el_val_t gram_build_vp(el_val_t verb, el_val_t aux, el_val_t profile);
 el_val_t gram_order_constituents(el_val_t subj, el_val_t verb, el_val_t obj, el_val_t profile);
 el_val_t gram_question_strategy(el_val_t profile);
 el_val_t gram_word_order(el_val_t profile);
-el_val_t grc_article(el_val_t gender, el_val_t gram_case, el_val_t number);
 el_val_t grc_article_feminine(el_val_t gram_case, el_val_t number);
 el_val_t grc_article_masculine(el_val_t gram_case, el_val_t number);
 el_val_t grc_article_neuter(el_val_t gram_case, el_val_t number);
+el_val_t grc_article(el_val_t gender, el_val_t gram_case, el_val_t number);
 el_val_t grc_conjugate(el_val_t verb, el_val_t tense, el_val_t person, el_val_t number);
 el_val_t grc_declension(el_val_t noun);
-el_val_t grc_decline(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t grc_decline_1a(el_val_t stem, el_val_t gram_case, el_val_t number);
 el_val_t grc_decline_1e(el_val_t stem, el_val_t gram_case, el_val_t number);
 el_val_t grc_decline_2m(el_val_t stem, el_val_t gram_case, el_val_t number);
 el_val_t grc_decline_2n(el_val_t stem, el_val_t gram_case, el_val_t number);
+el_val_t grc_decline(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t grc_echein_aorist(el_val_t slot);
 el_val_t grc_echein_future(el_val_t slot);
 el_val_t grc_echein_imperfect(el_val_t slot);
@@ -561,9 +569,9 @@ el_val_t grc_present_stem(el_val_t verb);
 el_val_t grc_slot(el_val_t person, el_val_t number);
 el_val_t grc_str_drop_last(el_val_t s, el_val_t n);
 el_val_t grc_str_ends(el_val_t s, el_val_t suf);
+el_val_t grc_str_last_char(el_val_t s);
 el_val_t grc_str_last2(el_val_t s);
 el_val_t grc_str_last3(el_val_t s);
-el_val_t grc_str_last_char(el_val_t s);
 el_val_t grc_thematic_future_ending(el_val_t slot);
 el_val_t grc_thematic_imperfect_ending(el_val_t slot);
 el_val_t grc_thematic_present_ending(el_val_t slot);
@@ -595,17 +603,17 @@ el_val_t handle_api_recall(el_val_t method, el_val_t path, el_val_t body);
 el_val_t handle_api_remember(el_val_t body);
 el_val_t handle_api_search_knowledge(el_val_t method, el_val_t path, el_val_t body);
 el_val_t handle_api_tune_config(el_val_t body);
-el_val_t handle_chat(el_val_t body);
 el_val_t handle_chat_agentic(el_val_t body);
 el_val_t handle_chat_as_soul(el_val_t body);
 el_val_t handle_chat_plan(el_val_t body);
+el_val_t handle_chat(el_val_t body);
 el_val_t handle_config(el_val_t method, el_val_t body);
 el_val_t handle_connectors(el_val_t method, el_val_t clean, el_val_t body);
 el_val_t handle_conversations(el_val_t method);
-el_val_t handle_dharma(el_val_t path, el_val_t method, el_val_t body);
 el_val_t handle_dharma_recv(el_val_t body);
-el_val_t handle_dharma_room_turn(el_val_t body);
 el_val_t handle_dharma_room_turn_agentic(el_val_t body);
+el_val_t handle_dharma_room_turn(el_val_t body);
+el_val_t handle_dharma(el_val_t path, el_val_t method, el_val_t body);
 el_val_t handle_elp_chat(el_val_t body);
 el_val_t handle_nlg(el_val_t path, el_val_t method, el_val_t body);
 el_val_t handle_request(el_val_t method, el_val_t path, el_val_t body);
@@ -613,11 +621,11 @@ el_val_t handle_safety_contact_get(void);
 el_val_t handle_safety_contact_post(el_val_t body);
 el_val_t handle_see(el_val_t body);
 el_val_t handle_session_approve(el_val_t session_id, el_val_t body);
-el_val_t handle_tool(el_val_t path, el_val_t method, el_val_t body);
 el_val_t handle_tool_result(el_val_t session_id, el_val_t body);
+el_val_t handle_tool(el_val_t path, el_val_t method, el_val_t body);
 el_val_t hard_bell_threshold(void);
-el_val_t he_conjugate(el_val_t verb, el_val_t tense, el_val_t person, el_val_t gender, el_val_t number);
 el_val_t he_conjugate_copula(el_val_t tense, el_val_t slot);
+el_val_t he_conjugate(el_val_t verb, el_val_t tense, el_val_t person, el_val_t gender, el_val_t number);
 el_val_t he_copula_future(el_val_t slot);
 el_val_t he_copula_past(el_val_t slot);
 el_val_t he_definite_prefix(el_val_t noun);
@@ -645,7 +653,6 @@ el_val_t he_str_drop_last(el_val_t s, el_val_t n);
 el_val_t he_str_ends(el_val_t s, el_val_t suf);
 el_val_t he_str_last_char(el_val_t s);
 el_val_t he_str_len(el_val_t s);
-el_val_t hebb_consolidate(void);
 el_val_t hi_agree_genitive(el_val_t possessed_gender, el_val_t possessed_number);
 el_val_t hi_aux_present(el_val_t person, el_val_t number);
 el_val_t hi_conjugate(el_val_t verb, el_val_t tense, el_val_t person, el_val_t gender, el_val_t number);
@@ -655,12 +662,12 @@ el_val_t hi_genitive_phrase(el_val_t possessor, el_val_t possessor_gender, el_va
 el_val_t hi_hona_past(el_val_t gender, el_val_t number);
 el_val_t hi_hona_present(el_val_t person, el_val_t number);
 el_val_t hi_masc_aa_stem(el_val_t noun);
-el_val_t hi_noun_direct(el_val_t noun, el_val_t gender, el_val_t number);
 el_val_t hi_noun_direct_f(el_val_t noun, el_val_t number);
 el_val_t hi_noun_direct_m(el_val_t noun, el_val_t number);
-el_val_t hi_noun_oblique(el_val_t noun, el_val_t gender, el_val_t number);
+el_val_t hi_noun_direct(el_val_t noun, el_val_t gender, el_val_t number);
 el_val_t hi_noun_oblique_f(el_val_t noun, el_val_t number);
 el_val_t hi_noun_oblique_m(el_val_t noun, el_val_t number);
+el_val_t hi_noun_oblique(el_val_t noun, el_val_t gender, el_val_t number);
 el_val_t hi_noun_with_post(el_val_t noun, el_val_t gender, el_val_t number, el_val_t gram_case);
 el_val_t hi_past_irregular(el_val_t stem, el_val_t gender, el_val_t number);
 el_val_t hi_past_suffix(el_val_t gender, el_val_t number);
@@ -670,11 +677,11 @@ el_val_t hi_str_drop_last(el_val_t s, el_val_t n);
 el_val_t hi_str_ends(el_val_t s, el_val_t suf);
 el_val_t hi_str_last_char(el_val_t s);
 el_val_t hi_tense_suffix(el_val_t tense, el_val_t gender, el_val_t number);
-el_val_t hi_verb_stem(el_val_t infinitive);
 el_val_t hi_verb_stem_clean(el_val_t infinitive);
+el_val_t hi_verb_stem(el_val_t infinitive);
 el_val_t hist_append(el_val_t hist, el_val_t role, el_val_t content);
-el_val_t hist_trim(el_val_t hist);
 el_val_t hist_trim_with_bell_guard(el_val_t hist);
+el_val_t hist_trim(el_val_t hist);
 el_val_t id_in_seen(el_val_t node_id, el_val_t seen);
 el_val_t idle_count(void);
 el_val_t idle_inc(void);
@@ -705,7 +712,6 @@ el_val_t json_escape(el_val_t s);
 el_val_t json_safe(el_val_t s);
 el_val_t la_conjugate(el_val_t verb, el_val_t tense, el_val_t person, el_val_t number);
 el_val_t la_declension(el_val_t noun);
-el_val_t la_decline(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t la_decline_1(el_val_t stem, el_val_t gram_case, el_val_t number);
 el_val_t la_decline_2er(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t la_decline_2m(el_val_t stem, el_val_t gram_case, el_val_t number);
@@ -713,6 +719,7 @@ el_val_t la_decline_2n(el_val_t stem, el_val_t gram_case, el_val_t number);
 el_val_t la_decline_3(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t la_decline_4(el_val_t stem, el_val_t gram_case, el_val_t number);
 el_val_t la_decline_5(el_val_t stem, el_val_t gram_case, el_val_t number);
+el_val_t la_decline(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t la_esse_future(el_val_t slot);
 el_val_t la_esse_past(el_val_t slot);
 el_val_t la_esse_present(el_val_t slot);
@@ -736,9 +743,9 @@ el_val_t la_slot(el_val_t person, el_val_t number);
 el_val_t la_stem(el_val_t verb, el_val_t vclass);
 el_val_t la_str_drop_last(el_val_t s, el_val_t n);
 el_val_t la_str_ends(el_val_t s, el_val_t suf);
+el_val_t la_str_last_char(el_val_t s);
 el_val_t la_str_last2(el_val_t s);
 el_val_t la_str_last3(el_val_t s);
-el_val_t la_str_last_char(el_val_t s);
 el_val_t la_velle_future(el_val_t slot);
 el_val_t la_velle_past(el_val_t slot);
 el_val_t la_velle_present(el_val_t slot);
@@ -755,7 +762,6 @@ el_val_t lang_is_fusional(el_val_t profile);
 el_val_t lang_is_isolating(el_val_t profile);
 el_val_t lang_is_polysynthetic(el_val_t profile);
 el_val_t lang_is_rtl(el_val_t profile);
-el_val_t lang_profile(el_val_t code, el_val_t word_order, el_val_t morph_type, el_val_t has_case, el_val_t has_gender, el_val_t script_dir, el_val_t agreement, el_val_t null_subject);
 el_val_t lang_profile_akk(void);
 el_val_t lang_profile_ang(void);
 el_val_t lang_profile_ar(void);
@@ -787,8 +793,10 @@ el_val_t lang_profile_sw(void);
 el_val_t lang_profile_txb(void);
 el_val_t lang_profile_uga(void);
 el_val_t lang_profile_zh(void);
+el_val_t lang_profile(el_val_t code, el_val_t word_order, el_val_t morph_type, el_val_t has_case, el_val_t has_gender, el_val_t script_dir, el_val_t agreement, el_val_t null_subject);
 el_val_t lang_word_order(el_val_t profile);
-el_val_t layered_cycle(el_val_t raw_input);
+el_val_t layered_cycle(el_val_t raw_input, el_val_t session_id, el_val_t utility);
+el_val_t layered_generate(el_val_t prompt, el_val_t imprint_id, el_val_t session_id);
 el_val_t lex_class(el_val_t entry);
 el_val_t lex_form(el_val_t entry, el_val_t idx);
 el_val_t lex_pos(el_val_t entry);
@@ -837,10 +845,10 @@ el_val_t morph_pluralize(el_val_t noun, el_val_t profile);
 el_val_t next_bridge_id(void);
 el_val_t nlg_is_ws(el_val_t c);
 el_val_t non_conjugate(el_val_t verb, el_val_t tense, el_val_t person, el_val_t number);
-el_val_t non_decline(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t non_decline_fem(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t non_decline_masc(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t non_decline_neut(el_val_t noun, el_val_t gram_case, el_val_t number);
+el_val_t non_decline(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t non_def_suffix_fem(el_val_t gram_case, el_val_t number);
 el_val_t non_def_suffix_masc(el_val_t gram_case, el_val_t number);
 el_val_t non_def_suffix_neut(el_val_t gram_case, el_val_t number);
@@ -874,8 +882,8 @@ el_val_t peo_ah_present(el_val_t slot);
 el_val_t peo_conjugate(el_val_t verb, el_val_t tense, el_val_t person, el_val_t number);
 el_val_t peo_da_past(el_val_t slot);
 el_val_t peo_da_present(el_val_t slot);
-el_val_t peo_decline(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t peo_decline_astem(el_val_t noun, el_val_t gram_case, el_val_t number);
+el_val_t peo_decline(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t peo_drop(el_val_t s, el_val_t n);
 el_val_t peo_ends(el_val_t s, el_val_t suf);
 el_val_t peo_kar_past(el_val_t slot);
@@ -891,11 +899,11 @@ el_val_t perceive(void);
 el_val_t pi_aorist_ending(el_val_t slot);
 el_val_t pi_atthi_present(el_val_t slot);
 el_val_t pi_conjugate(el_val_t verb, el_val_t tense, el_val_t person, el_val_t number);
-el_val_t pi_decline(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t pi_decline_a_fem_pl(el_val_t stem, el_val_t gram_case);
 el_val_t pi_decline_a_fem_sg(el_val_t stem, el_val_t gram_case);
 el_val_t pi_decline_a_masc_pl(el_val_t stem, el_val_t gram_case);
 el_val_t pi_decline_a_masc_sg(el_val_t stem, el_val_t gram_case);
+el_val_t pi_decline(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t pi_detect_class(el_val_t noun);
 el_val_t pi_drop(el_val_t s, el_val_t n);
 el_val_t pi_future_ending(el_val_t slot);
@@ -926,11 +934,11 @@ el_val_t proactive_curiosity(void);
 el_val_t pulse_count(void);
 el_val_t pulse_inc(void);
 el_val_t rate_limit_check(el_val_t ip, el_val_t path);
-el_val_t realize(el_val_t form);
 el_val_t realize_lang(el_val_t form, el_val_t profile);
 el_val_t realize_np(el_val_t referent, el_val_t number);
 el_val_t realize_question_lang(el_val_t predicate, el_val_t tense, el_val_t aspect, el_val_t person, el_val_t number, el_val_t agent, el_val_t patient, el_val_t location, el_val_t profile);
 el_val_t realize_vp_lang(el_val_t base_verb, el_val_t tense, el_val_t aspect, el_val_t person, el_val_t number, el_val_t profile);
+el_val_t realize(el_val_t form);
 el_val_t record(el_val_t outcome_json);
 el_val_t render_studio(void);
 el_val_t render_tree(el_val_t tree);
@@ -941,9 +949,9 @@ el_val_t route_imprint_contextual(el_val_t body);
 el_val_t route_imprint_user(el_val_t body);
 el_val_t route_lineage(void);
 el_val_t route_synthesize(el_val_t body);
-el_val_t ru_conjugate(el_val_t verb, el_val_t tense, el_val_t person, el_val_t number, el_val_t gender);
 el_val_t ru_conjugate_1st(el_val_t stem, el_val_t tense, el_val_t person, el_val_t number);
 el_val_t ru_conjugate_2nd(el_val_t stem, el_val_t tense, el_val_t person, el_val_t number);
+el_val_t ru_conjugate(el_val_t verb, el_val_t tense, el_val_t person, el_val_t number, el_val_t gender);
 el_val_t ru_decline_fem(el_val_t noun, el_val_t stype, el_val_t gram_case, el_val_t number);
 el_val_t ru_decline_masc(el_val_t noun, el_val_t stype, el_val_t gram_case, el_val_t number);
 el_val_t ru_decline_neut(el_val_t noun, el_val_t stype, el_val_t gram_case, el_val_t number);
@@ -956,8 +964,8 @@ el_val_t ru_past_stem(el_val_t verb);
 el_val_t ru_stem_type(el_val_t noun, el_val_t gender);
 el_val_t rule_id(el_val_t rule);
 el_val_t rule_lhs(el_val_t rule);
-el_val_t rule_rhs(el_val_t rule, el_val_t idx);
 el_val_t rule_rhs_len(el_val_t rule);
+el_val_t rule_rhs(el_val_t rule, el_val_t idx);
 el_val_t run_command_guard(el_val_t cmd, el_val_t root);
 el_val_t run_command_is_readonly(el_val_t cmd);
 el_val_t sa_as_future(el_val_t slot);
@@ -971,11 +979,11 @@ el_val_t sa_class1_future_ending(el_val_t slot);
 el_val_t sa_class1_past_ending(el_val_t slot);
 el_val_t sa_class1_present_ending(el_val_t slot);
 el_val_t sa_conjugate(el_val_t verb, el_val_t tense, el_val_t person, el_val_t number);
-el_val_t sa_decline(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t sa_decline_a_stem_pl(el_val_t stem, el_val_t gram_case);
 el_val_t sa_decline_a_stem_sg(el_val_t stem, el_val_t gram_case);
 el_val_t sa_decline_aa_stem_pl(el_val_t stem, el_val_t gram_case);
 el_val_t sa_decline_aa_stem_sg(el_val_t stem, el_val_t gram_case);
+el_val_t sa_decline(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t sa_drs_future(el_val_t slot);
 el_val_t sa_drs_past(el_val_t slot);
 el_val_t sa_drs_present(el_val_t slot);
@@ -1023,26 +1031,26 @@ el_val_t scan_token(el_val_t s, el_val_t start);
 el_val_t security_research_authorized(void);
 el_val_t seed_persona_from_env(void);
 el_val_t sem_first_modifier(el_val_t mods);
-el_val_t sem_frame(el_val_t intent, el_val_t subject, el_val_t obj, el_val_t modifiers);
 el_val_t sem_frame_lang(el_val_t intent, el_val_t subject, el_val_t obj, el_val_t modifiers, el_val_t lang_code);
 el_val_t sem_frame_obj(el_val_t intent, el_val_t subject, el_val_t obj);
 el_val_t sem_frame_simple(el_val_t intent, el_val_t subject);
+el_val_t sem_frame(el_val_t intent, el_val_t subject, el_val_t obj, el_val_t modifiers);
 el_val_t sem_get(el_val_t json, el_val_t key);
-el_val_t sem_intent(el_val_t frame);
 el_val_t sem_intent_to_realize(el_val_t intent);
+el_val_t sem_intent(el_val_t frame);
 el_val_t sem_lang(el_val_t frame);
 el_val_t sem_modifiers(el_val_t frame);
 el_val_t sem_object(el_val_t frame);
-el_val_t sem_realize(el_val_t frame);
 el_val_t sem_realize_full(el_val_t frame, el_val_t verb, el_val_t tense, el_val_t aspect);
 el_val_t sem_realize_greet(el_val_t subject);
 el_val_t sem_realize_lang(el_val_t frame, el_val_t lang_code);
+el_val_t sem_realize(el_val_t frame);
 el_val_t sem_subject(el_val_t frame);
-el_val_t sem_to_spec(el_val_t frame);
 el_val_t sem_to_spec_full(el_val_t frame, el_val_t verb, el_val_t tense, el_val_t aspect);
+el_val_t sem_to_spec(el_val_t frame);
 el_val_t session_auto_title(el_val_t session_id, el_val_t first_message);
-el_val_t session_create(el_val_t body);
 el_val_t session_create_cleanup(el_val_t session_id);
+el_val_t session_create(el_val_t body);
 el_val_t session_delete(el_val_t session_id);
 el_val_t session_exists(el_val_t session_id);
 el_val_t session_get(el_val_t session_id);
@@ -1051,11 +1059,11 @@ el_val_t session_hist_save(el_val_t session_id, el_val_t hist);
 el_val_t session_list(void);
 el_val_t session_make_content(el_val_t id, el_val_t title, el_val_t created_at, el_val_t updated_at, el_val_t folder);
 el_val_t session_preload_bullets(el_val_t nodes, el_val_t max_bullets, el_val_t snip_len);
-el_val_t session_search(el_val_t query);
 el_val_t session_search_entry(el_val_t node);
+el_val_t session_search(el_val_t query);
 el_val_t session_summary_autogenerate(el_val_t hist);
-el_val_t session_summary_write(el_val_t summary_text);
 el_val_t session_summary_write_dated(el_val_t summary_text, el_val_t label);
+el_val_t session_summary_write(el_val_t summary_text);
 el_val_t session_title_from_message(el_val_t message);
 el_val_t session_update_meta_timestamp(el_val_t session_id);
 el_val_t session_update_patch(el_val_t session_id, el_val_t body);
@@ -1066,9 +1074,9 @@ el_val_t sga_bith_past(el_val_t slot);
 el_val_t sga_bith_present(el_val_t slot);
 el_val_t sga_conjugate(el_val_t verb, el_val_t tense, el_val_t person, el_val_t number);
 el_val_t sga_copula_present(el_val_t slot);
-el_val_t sga_decline(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t sga_decline_astem(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t sga_decline_ostem(el_val_t noun, el_val_t gram_case, el_val_t number);
+el_val_t sga_decline(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t sga_detect_gender(el_val_t noun);
 el_val_t sga_drop(el_val_t s, el_val_t n);
 el_val_t sga_first(el_val_t s);
@@ -1096,9 +1104,9 @@ el_val_t steward_session_check(el_val_t input, el_val_t session_id);
 el_val_t steward_validate_imprint(el_val_t imprint_id, el_val_t tool_name);
 el_val_t str_drop_last(el_val_t s, el_val_t n);
 el_val_t str_ends(el_val_t s, el_val_t suf);
+el_val_t str_last_char(el_val_t s);
 el_val_t str_last2(el_val_t s);
 el_val_t str_last3(el_val_t s);
-el_val_t str_last_char(el_val_t s);
 el_val_t strengthen_chat_nodes(el_val_t activation_nodes);
 el_val_t strip_query(el_val_t path);
 el_val_t studio_tools_json(void);
@@ -1125,8 +1133,8 @@ el_val_t sux_realize_sentence(el_val_t intent, el_val_t agent, el_val_t predicat
 el_val_t sux_slot(el_val_t person, el_val_t number);
 el_val_t sux_str_drop_last(el_val_t s, el_val_t n);
 el_val_t sux_str_ends(el_val_t s, el_val_t suf);
-el_val_t sux_str_last2(el_val_t s);
 el_val_t sux_str_last_char(el_val_t s);
+el_val_t sux_str_last2(el_val_t s);
 el_val_t sux_tum2_past(el_val_t slot);
 el_val_t sux_tum2_present(el_val_t slot);
 el_val_t sux_verb_chain(el_val_t agent, el_val_t verb, el_val_t patient, el_val_t tense);
@@ -1144,9 +1152,9 @@ el_val_t sw_noun_plural(el_val_t noun);
 el_val_t sw_obj_prefix(el_val_t person, el_val_t number, el_val_t noun_class);
 el_val_t sw_str_drop_last(el_val_t s, el_val_t n);
 el_val_t sw_str_ends(el_val_t s, el_val_t suf);
+el_val_t sw_str_first_char(el_val_t s);
 el_val_t sw_str_first2(el_val_t s);
 el_val_t sw_str_first3(el_val_t s);
-el_val_t sw_str_first_char(el_val_t s);
 el_val_t sw_str_last_char(el_val_t s);
 el_val_t sw_subj_prefix(el_val_t person, el_val_t number, el_val_t noun_class);
 el_val_t sw_tense_marker(el_val_t tense);
@@ -1164,9 +1172,9 @@ el_val_t tombstone_node(el_val_t id);
 el_val_t tombstoned_id_set(void);
 el_val_t tool_auto_approved(el_val_t tool_name);
 el_val_t txb_conjugate(el_val_t verb, el_val_t tense, el_val_t person, el_val_t number);
-el_val_t txb_decline(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t txb_decline_fem(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t txb_decline_masc(el_val_t noun, el_val_t gram_case, el_val_t number);
+el_val_t txb_decline(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t txb_detect_gender(el_val_t noun);
 el_val_t txb_drop(el_val_t s, el_val_t n);
 el_val_t txb_ends(el_val_t s, el_val_t suf);
@@ -1181,8 +1189,8 @@ el_val_t txb_wes_present(el_val_t slot);
 el_val_t txb_ya_present(el_val_t slot);
 el_val_t uga_amr_imperfect(el_val_t slot);
 el_val_t uga_amr_perfect(el_val_t slot);
-el_val_t uga_conjugate(el_val_t verb, el_val_t tense, el_val_t person, el_val_t number);
 el_val_t uga_conjugate_copula(el_val_t tense, el_val_t slot);
+el_val_t uga_conjugate(el_val_t verb, el_val_t tense, el_val_t person, el_val_t number);
 el_val_t uga_decline(el_val_t noun, el_val_t gram_case, el_val_t number);
 el_val_t uga_generic_imperfect(el_val_t base3sg, el_val_t slot);
 el_val_t uga_generic_perfect(el_val_t base3sg, el_val_t slot);
@@ -1197,8 +1205,8 @@ el_val_t uga_map_canonical(el_val_t verb);
 el_val_t uga_noun_phrase(el_val_t noun, el_val_t gram_case, el_val_t number, el_val_t definite);
 el_val_t uga_ray_imperfect(el_val_t slot);
 el_val_t uga_ray_perfect(el_val_t slot);
-el_val_t uga_slot(el_val_t person, el_val_t number);
 el_val_t uga_slot_g(el_val_t person, el_val_t gender, el_val_t number);
+el_val_t uga_slot(el_val_t person, el_val_t number);
 el_val_t uga_str_drop_last(el_val_t s, el_val_t n);
 el_val_t uga_str_ends(el_val_t s, el_val_t suf);
 el_val_t uga_str_len(el_val_t s);
@@ -1206,6 +1214,6 @@ el_val_t uga_strip_nom(el_val_t noun);
 el_val_t verb_form(el_val_t base, el_val_t tense, el_val_t person, el_val_t number);
 el_val_t vocab_by_class(el_val_t cls);
 el_val_t vocab_by_pos(el_val_t pos);
-el_val_t vocab_lookup(el_val_t word, el_val_t lang_code);
 el_val_t vocab_lookup_en(el_val_t word);
+el_val_t vocab_lookup(el_val_t word, el_val_t lang_code);
 el_val_t vocab_synonym(el_val_t word, el_val_t lang_register, el_val_t lang_code);

dist/neuron-api.c

@@ -10,7 +10,6 @@ el_val_t mem_remember(el_val_t content, el_val_t tags);
 el_val_t mem_recall(el_val_t query, el_val_t depth);
 el_val_t mem_search(el_val_t query, el_val_t limit);
 el_val_t mem_strengthen(el_val_t node_id);
-el_val_t mem_tombstone(el_val_t node_id);
 el_val_t mem_forget(el_val_t node_id);
 el_val_t mem_consolidate(void);
 el_val_t mem_save(el_val_t path);
@@ -361,7 +360,7 @@ el_val_t handle_api_remember(el_val_t body) {
   el_val_t sal = ({ el_val_t _if_result_14 = 0; if (str_eq(sal_str, EL_STR("0.95"))) { _if_result_14 = (el_from_float(0.95)); } else { _if_result_14 = (({ el_val_t _if_result_15 = 0; if (str_eq(sal_str, EL_STR("0.75"))) { _if_result_15 = (el_from_float(0.75)); } else { _if_result_15 = (({ el_val_t _if_result_16 = 0; if (str_eq(sal_str, EL_STR("0.25"))) { _if_result_16 = (el_from_float(0.25)); } else { _if_result_16 = (el_from_float(0.5)); } _if_result_16; })); } _if_result_15; })); } _if_result_14; });
   el_val_t base_tags = ({ el_val_t _if_result_17 = 0; if (str_eq(tags_raw, EL_STR(""))) { _if_result_17 = (EL_STR("[\"Memory\"]")); } else { _if_result_17 = (tags_raw); } _if_result_17; });
   el_val_t final_tags = ({ el_val_t _if_result_18 = 0; if (str_eq(project, EL_STR(""))) { _if_result_18 = (base_tags); } else { el_val_t inner = str_slice(base_tags, 1, (str_len(base_tags) - 1)); _if_result_18 = (el_str_concat(el_str_concat(el_str_concat(el_str_concat(EL_STR("["), inner), EL_STR(",\"project:")), project), EL_STR("\"]"))); } _if_result_18; });
-  el_val_t id = engram_node_full(content, EL_STR("Memory"), EL_STR("memory:remembered"), sal, sal, el_from_float(0.9), EL_STR("Episodic"), final_tags);
+  el_val_t id = engram_node_full(content, EL_STR("Memory"), EL_STR("memory:remembered"), el_from_float(sal), el_from_float(sal), el_from_float(0.9), EL_STR("Episodic"), final_tags);
   if (!api_persisted(id)) {
     return api_not_persisted(id);
   }
@@ -384,7 +383,7 @@ el_val_t handle_api_node_create(el_val_t body) {
   el_val_t tags = ({ el_val_t _if_result_22 = 0; if (str_eq(tags_raw, EL_STR(""))) { _if_result_22 = (el_str_concat(el_str_concat(EL_STR("[\""), node_type), EL_STR("\"]"))); } else { _if_result_22 = (tags_raw); } _if_result_22; });
   el_val_t importance = json_get(body, EL_STR("importance"));
   el_val_t sal = ({ el_val_t _if_result_23 = 0; if (str_eq(importance, EL_STR("critical"))) { _if_result_23 = (el_from_float(0.95)); } else { _if_result_23 = (({ el_val_t _if_result_24 = 0; if (str_eq(importance, EL_STR("high"))) { _if_result_24 = (el_from_float(0.75)); } else { _if_result_24 = (({ el_val_t _if_result_25 = 0; if (str_eq(importance, EL_STR("low"))) { _if_result_25 = (el_from_float(0.25)); } else { _if_result_25 = (el_from_float(0.5)); } _if_result_25; })); } _if_result_24; })); } _if_result_23; });
-  el_val_t id = engram_node_full(content, node_type, label, sal, sal, el_from_float(0.9), tier, tags);
+  el_val_t id = engram_node_full(content, node_type, label, el_from_float(sal), el_from_float(sal), el_from_float(0.9), tier, tags);
   if (!api_persisted(id)) {
     return api_not_persisted(id);
   }
@@ -497,9 +496,8 @@ el_val_t handle_api_capture_knowledge(el_val_t body) {
     return api_err(EL_STR("content is required"));
   }
   el_val_t full = ({ el_val_t _if_result_44 = 0; if (str_eq(title, EL_STR(""))) { _if_result_44 = (content); } else { _if_result_44 = (el_str_concat(el_str_concat(title, EL_STR(": ")), content)); } _if_result_44; });
-  el_val_t lbl = str_slice(title, 0, 80);
   el_val_t tags = EL_STR("[\"Knowledge\",\"captured\"]");
-  el_val_t id = engram_node_full(full, EL_STR("Knowledge"), lbl, el_from_float(0.85), el_from_float(0.8), el_from_float(0.9), EL_STR("Episodic"), tags);
+  el_val_t id = engram_node_full(full, EL_STR("Knowledge"), EL_STR("knowledge:captured"), el_from_float(0.85), el_from_float(0.8), el_from_float(0.9), EL_STR("Episodic"), tags);
   if (!api_persisted(id)) {
     return api_not_persisted(id);
   }
@@ -517,7 +515,7 @@ el_val_t handle_api_evolve_knowledge(el_val_t body) {
     return api_err_protected(prior_id);
   }
   el_val_t tags = EL_STR("[\"Knowledge\",\"evolved\"]");
-  el_val_t new_id = engram_node_full(content, EL_STR("Knowledge"), EL_STR(""), el_from_float(0.75), el_from_float(0.75), el_from_float(0.9), EL_STR("Episodic"), tags);
+  el_val_t new_id = engram_node_full(content, EL_STR("Knowledge"), EL_STR("knowledge:evolved"), el_from_float(0.75), el_from_float(0.75), el_from_float(0.9), EL_STR("Episodic"), tags);
   if (!api_persisted(new_id)) {
     return api_not_persisted(new_id);
   }
@@ -539,7 +537,7 @@ el_val_t handle_api_promote_knowledge(el_val_t body) {
   }
   el_val_t tags_raw = json_get(body, EL_STR("tags"));
   el_val_t tags = ({ el_val_t _if_result_45 = 0; if (str_eq(tags_raw, EL_STR(""))) { _if_result_45 = (EL_STR("[\"Knowledge\",\"tier:canonical\",\"disposition:stable\"]")); } else { _if_result_45 = (tags_raw); } _if_result_45; });
-  el_val_t new_id = engram_node_full(content, EL_STR("Knowledge"), EL_STR(""), el_from_float(0.9), el_from_float(0.9), el_from_float(1.0), EL_STR("Canonical"), tags);
+  el_val_t new_id = engram_node_full(content, EL_STR("Knowledge"), EL_STR("knowledge:canonical"), el_from_float(0.9), el_from_float(0.9), el_from_float(1.0), EL_STR("Canonical"), tags);
   if (!api_persisted(new_id)) {
     return api_not_persisted(new_id);
   }
@@ -710,7 +708,7 @@ el_val_t handle_api_evolve_memory(el_val_t body) {
   el_val_t sal_str = ({ el_val_t _if_result_65 = 0; if (str_eq(importance, EL_STR("critical"))) { _if_result_65 = (EL_STR("0.95")); } else { _if_result_65 = (({ el_val_t _if_result_66 = 0; if (str_eq(importance, EL_STR("high"))) { _if_result_66 = (EL_STR("0.75")); } else { _if_result_66 = (({ el_val_t _if_result_67 = 0; if (str_eq(importance, EL_STR("low"))) { _if_result_67 = (EL_STR("0.25")); } else { _if_result_67 = (EL_STR("0.50")); } _if_result_67; })); } _if_result_66; })); } _if_result_65; });
   el_val_t sal = ({ el_val_t _if_result_68 = 0; if (str_eq(sal_str, EL_STR("0.95"))) { _if_result_68 = (el_from_float(0.95)); } else { _if_result_68 = (({ el_val_t _if_result_69 = 0; if (str_eq(sal_str, EL_STR("0.75"))) { _if_result_69 = (el_from_float(0.75)); } else { _if_result_69 = (({ el_val_t _if_result_70 = 0; if (str_eq(sal_str, EL_STR("0.25"))) { _if_result_70 = (el_from_float(0.25)); } else { _if_result_70 = (el_from_float(0.5)); } _if_result_70; })); } _if_result_69; })); } _if_result_68; });
   el_val_t tags = EL_STR("[\"Memory\",\"evolved\"]");
-  el_val_t new_id = engram_node_full(content, EL_STR("Memory"), EL_STR("memory:evolved"), sal, sal, el_from_float(0.9), EL_STR("Episodic"), tags);
+  el_val_t new_id = engram_node_full(content, EL_STR("Memory"), EL_STR("memory:evolved"), el_from_float(sal), el_from_float(sal), el_from_float(0.9), EL_STR("Episodic"), tags);
   if (!str_eq(prior_id, EL_STR("")) && !str_eq(new_id, EL_STR(""))) {
     engram_connect(new_id, prior_id, el_from_float(0.9), EL_STR("supersedes"));
   }
@@ -785,7 +783,7 @@ el_val_t handle_api_cultivate(el_val_t body) {
     el_val_t importance = json_get(body, EL_STR("importance"));
     el_val_t sal = ({ el_val_t _if_result_71 = 0; if (str_eq(importance, EL_STR("critical"))) { _if_result_71 = (el_from_float(0.95)); } else { _if_result_71 = (({ el_val_t _if_result_72 = 0; if (str_eq(importance, EL_STR("high"))) { _if_result_72 = (el_from_float(0.75)); } else { _if_result_72 = (({ el_val_t _if_result_73 = 0; if (str_eq(importance, EL_STR("low"))) { _if_result_73 = (el_from_float(0.25)); } else { _if_result_73 = (el_from_float(0.5)); } _if_result_73; })); } _if_result_72; })); } _if_result_71; });
     el_val_t tags = EL_STR("[\"Memory\",\"evolved\",\"cultivated\"]");
-    el_val_t new_id = engram_node_full(content, EL_STR("Memory"), EL_STR("memory:cultivated"), sal, sal, el_from_float(0.9), EL_STR("Episodic"), tags);
+    el_val_t new_id = engram_node_full(content, EL_STR("Memory"), EL_STR("memory:cultivated"), el_from_float(sal), el_from_float(sal), el_from_float(0.9), EL_STR("Episodic"), tags);
     if (!str_eq(prior_id, EL_STR("")) && !str_eq(new_id, EL_STR(""))) {
       engram_connect(new_id, prior_id, el_from_float(0.9), EL_STR("supersedes"));
     }
@@ -828,8 +826,8 @@ el_val_t handle_api_consolidate(el_val_t body) {
   el_val_t summary = json_get(body, EL_STR("summary"));
   el_val_t snap = state_get(EL_STR("soul_snapshot_path"));
   if (!str_eq(snap, EL_STR(""))) {
-    el_val_t saved = engram_save(snap);
-    if (saved == 0) {
+    el_val_t save_result = engram_save(snap);
+    if (str_eq(save_result, EL_STR(""))) {
       println(el_str_concat(el_str_concat(EL_STR("[api] consolidate: engram_save failed for "), snap), EL_STR(" \xe2\x80\x94 snapshot may be out of sync")));
     }
   }

dist/neuron.c

@@ -541,7 +541,7 @@ int main(int _argc, char** _argv) {
   axon_raw = env(EL_STR("NEURON_API_URL"));
   axon_base = ({ el_val_t _if_result_47 = 0; if (str_eq(axon_raw, EL_STR(""))) { _if_result_47 = (EL_STR("http://localhost:7771")); } else { _if_result_47 = (axon_raw); } _if_result_47; });
   studio_dir_raw = env(EL_STR("SOUL_STUDIO_DIR"));
-  studio_dir = ({ el_val_t _if_result_48 = 0; if (str_eq(studio_dir_raw, EL_STR(""))) { _if_result_48 = (EL_STR("/Users/will/Development/neuron-technologies/products/cgi-studio/el-daemon")); } else { _if_result_48 = (studio_dir_raw); } _if_result_48; });
+  studio_dir = ({ el_val_t _if_result_48 = 0; if (str_eq(studio_dir_raw, EL_STR(""))) { _if_result_48 = (el_str_concat(env(EL_STR("HOME")), EL_STR("/Development/neuron-technologies/products/cgi-studio/el-daemon"))); } else { _if_result_48 = (studio_dir_raw); } _if_result_48; });
   println(el_str_concat(el_str_concat(el_str_concat(EL_STR("[soul] boot - cgi="), soul_cgi_id), EL_STR(" port=")), int_to_str(port)));
   using_http_engram = !str_eq(engram_url_raw, EL_STR(""));
   engram_load(snapshot);

dist/routes.c

@@ -460,9 +460,9 @@ el_val_t handle_request(el_val_t method, el_val_t path, el_val_t body) {
       return engram_scan_nodes_json(9999, 0);
     }
     if (str_eq(clean, EL_STR("/api/graph/edges"))) {
-      el_val_t export_path = el_str_concat(env(EL_STR("HOME")), EL_STR("/.neuron/engram/.soul-edges-export.json"));
-      engram_save(export_path);
-      el_val_t snap = fs_read(export_path);
+      el_val_t snap_path = el_str_concat(env(EL_STR("HOME")), EL_STR("/.neuron/engram/snapshot.json"));
+      engram_save(snap_path);
+      el_val_t snap = fs_read(snap_path);
       el_val_t edges_raw = json_get_raw(snap, EL_STR("edges"));
       return ({ el_val_t _if_result_21 = 0; if (str_eq(edges_raw, EL_STR(""))) { _if_result_21 = (EL_STR("[]")); } else { _if_result_21 = (edges_raw); } _if_result_21; });
     }

dist/soul-with-nlg.el

@@ -1,3 +1,18 @@
+// ╔══════════════════════════════════════════════════════════════════════════╗
+// ║ STALE BUNDLE — DO NOT BUILD. UNSAFE CHAT PATH.                           ║
+// ╚══════════════════════════════════════════════════════════════════════════╝
+// This concatenated bundle is a snapshot, not a source of truth, and it is stale in
+// a way that matters for safety: it wires /api/chat straight to handle_chat and
+// contains NO layered_cycle at all (verified: zero occurrences in the bundled code —
+// the only textual hit in this file is this banner). A binary built from
+// this file would run chat with no enforcing input gate (no safety_screen, no
+// hard-bell short-circuit) and no enforcing output gate (no safety_validate).
+//
+// Build from the .el sources via manifest.el (entry soul.el), or from dist/soul.c.
+// Nothing in the repo references this file. It is kept only as a historical artifact
+// and should be deleted once Will confirms nothing external depends on it.
+// (Flagged 2026-08-04 in _engine-websearch-20260804/SAFETY-STOP.md; banner added
+// 2026-08-05 with the plain-chat generation fix.)
 // language-profile.el - Language profile data and accessors.
 //
 // A language profile is a slot map ([String] key-value list) describing the
@@ -21304,7 +21319,7 @@ println("[memory] consolidate stats=" + stats)
 let soul_axon_base_raw: String = env("NEURON_API_URL")
 let soul_axon_base: String = if str_eq(soul_axon_base_raw, "") { "http://localhost:7771" } else { soul_axon_base_raw }
 let soul_token: String = env("NEURON_TOKEN")
-let soul_studio_ui_dir: String = "/Users/will/Development/neuron-technologies/products/cgi-studio/el-daemon"
+let soul_studio_ui_dir: String = env("HOME") + "/Development/neuron-technologies/products/cgi-studio/el-daemon"
 
 // ── Runtime bridge helpers ────────────────────────────────────────────────────
 

dist/soul.c.stamp

@@ -0,0 +1,18 @@
+# soul.c.stamp — fingerprint of the .el sources dist/soul.c was generated from.
+# Written by tools/soulc-stamp.sh --write. Do not hand-edit.
+# generated_amalgam_sha256 ee09798ad93ddd047136577cf324483e5956984d60d06596d34662f315ee0df4
+# generated_amalgam_bytes  1204845
+f8597e10546654bce3fbbe40461b2da59d0e06dbf1b038d1d362d24f949e3911  awareness.el
+b6f3d14ca0c26017a2d617399a6d3754dabb0905e4d5f52eb75d25c4ad18d3c5  chat.el
+42288c212cbf72fb1e8ecbd4d9900e4e9ee1cfa475b7974295c7637f1bf2939f  elp-input.el
+b3f77f49d6086932c38bd17fe7a5eaf8bce25685f6fc3e1750f05729c6b49b9e  imprint.el
+fba8ffdb9ba72bca5b09ca1c93a520edc52f3f4d8aec2c7585fe9b17e06420b2  manifest.el
+550a72e234ae8cec1f33e02108fd365353f45edd88513da90b792e79b6c0e5f0  memory.el
+5ec07ec9785b02abe32f3ff7acf2d1f9f7e07c0967fac97e6eff17d7110b5c84  neuron-api.el
+03c47c451e0e87f2c252cadb4b765867943962a804f548dd53adeef0520912c8  persist.el
+a6d69f3fc55233d9d3300160fd46a1551f2064bcd0fb84e2c9e432f636a72476  routes.el
+c28e36952ec56525963a0bdf29455ab097d3b0c5653d19c25fbb005e1069a1f7  safety.el
+fd3ab91d0ae0ea26639e21bef2f8f94054dc4b02eae68b19e3fe689d2769aad4  sessions.el
+5613b60d74d5d7768f46da5ac435a5dd99d38c27f0f7013c89fa27e98dc8a21c  soul.el
+30337940905171a9645b0929f0a412ce6b3dccb1246495070c553bca0bbae6cd  stewardship.el
+e105dc5990e6adbf39db9dc0462cd8bcf6e6c3dfd03709059227ecfad2bbab29  studio.el

docs/NARRATED-RUNS-ENGINE-NOTES-20260713.md

@@ -0,0 +1,34 @@
+# Narrated runs — engine notes for Will (2026-07-13)
+
+Source half: commit aa67f86 on feat/agent-phase1-soul (run-progress ledger,
+`/api/run-progress/<sid>` route, narration on the pause envelope, config display
+default). E2E-verified via the compiled test bed on Tim's clean profile.
+
+Compiled-form-only fixes (in `neuron-container-build/soul-narrated-runs-20260713.patch`,
+applies ON TOP of `soul-webfix-20260711.patch` — these need porting to chat.el when the
+webfix itself is ported):
+
+1. **pause_turn + tool_use interleave**: a pause_turn response can ALSO carry a client
+   tool_use; resuming verbatim leaves it unpaired → Anthropic 400 "tool_use ids were
+   found without tool_result". Fix: tool-bearing pause rounds are tool turns
+   (dispatch + pair); verbatim resume only when the round has no client tool.
+2. **Agentic toolset scope**: agentic_tools_all() fed EVERY connector/MCP tool (Notion,
+   code-execution…) into the loop. Code-execution flips the API into programmatic
+   tool calling, whose pairing protocol the single-tool manual loop does not speak —
+   source of the dangling-pair 400s AND the bash_code_execution workspace-dodge.
+   Fix: handle_chat_agentic declares builtins + ONE server web_search only.
+   Connector tools return when the loop gains real multi-tool/programmatic support.
+3. **disable_parallel_tool_use: true** on agentic requests — the loop captures only the
+   first tool_use per round; Opus-class models parallel-call. Enforce the invariant.
+4. **web_search server-tool default variant → web_search_20250305 (GA)**. The 20260209
+   variant couples to code-execution ⇒ programmatic mode (see #2, and the June note:
+   "inert unless code-execution attached").
+5. **Homegrown web_search removed** from the tool catalog (server-side is the one tool).
+
+Known engine debts this work surfaced (not fixed):
+
+- **Poisoned session history**: a failed run persists the malformed assistant turn; every
+  later turn in that session replays it and 400s. Needs history sanitation on load.
+- **Huge-history invalid-escape 400** (~346KB request) — likely the same poisoned blob.
+- **macOS note**: replacing a binary in place invalidates its ad-hoc signature (instant
+  silent SIGKILL, looks like exit 0). `rm + cp + codesign -f -s -` is the swap ritual.

docs/architecture/00-overview.md

@@ -1,145 +0,0 @@
-# Neuron — Architecture Overview
-
-> Status: living document. Grounded in the committed source of the `neuron`
-> repository as of 2026-08-10. Every structural claim cites a real file. Where a
-> statement is inferred rather than read directly, it is labelled *(inference)*
-> or *(unverified/TODO)*.
-
-## What Neuron is
-
-Neuron is a **persistent CGI (Cultivated General Intelligence) runtime**. It is
-not a chatbot and not a stateless API in front of an LLM. It is a long-lived
-process that *remembers* — it carries an identity, a graph of memory and
-knowledge, and an autonomous idle-cognition loop across restarts. The LLM is one
-resource it calls; the durable part is the **engram** (the graph) and the
-**soul** (the program that reasons over it).
-
-Three things run together to make that true:
-
-- **The soul** — the compiled El program in this repo. It owns the HTTP surface,
-  the cognitive API, the request pipeline (`layered_cycle`), and the autonomous
-  awareness daemon. Entry point `soul.el`, served by `handle_request`
-  (`routes.el:358`).
-- **The engram** — the graph store. Node/edge model, spreading activation, and
-  Hebbian co-activation physically live in the shared El runtime
-  (`el_runtime.c`); `engram/src/server.el` is a thin HTTP face on `:8742`. The
-  engram is a *sibling* repo (`foundation/el/engram`), compiled and co-located at
-  runtime, not part of this repo's source tree.
-- **The El runtime** — `el_runtime.c` / `el_runtime.h`. Every compiled El binary
-  links it. It implements all builtins (`engram_*`, `http_*`, `json_*`, LLM,
-  crypto) and *is* the database — "no SQL, no db layer, no SQLite"
-  (`../foundation/el/engram/src/server.el:4-6`).
-
-Neuron persists memory itself — this repo is the memory system. Do not confuse
-it with the Neuron desktop/UI application, which is **out of scope** here and is
-only ever a *client* of the MCP surface described in this set.
-
-## System context
-
-```
-        ┌────────────────────────────────────────────────────────────┐
-        │  MCP clients (Claude Code, Soma chat UI, agents)             │
-        │  — talk MCP JSON-RPC over stdio, or HTTP to the soul         │
-        └───────────────┬────────────────────────────────────────────┘
-                        │  MCP JSON-RPC (stdio)
-             ┌──────────▼──────────┐
-             │  mcp-proxy  :7779   │  byte-forwarder + retry + health
-             └──────────┬──────────┘
-                        │  MCP JSON-RPC (stdio→HTTP)
-             ┌──────────▼──────────┐
-             │  mcp-wrapper :17779 │  JSON-RPC ⇄ soul REST; ~90-tool catalog
-             └──────────┬──────────┘
-                        │  HTTP (REST)
-             ┌──────────▼──────────┐        ┌──────────────────────────┐
-             │   soul  :7770       │──HTTP──▶│  engram  :8742           │
-             │   handle_request    │        │  graph store (snapshot)  │
-             │   layered_cycle     │◀──────▶│  el_runtime.c = the DB   │
-             │   awareness daemon  │        └──────────────────────────┘
-             └──────────┬──────────┘
-                        │ HTTP
-        ┌───────────────┼───────────────┬───────────────┐
-        ▼               ▼               ▼               ▼
-   Axon backend    neuron-connectd    LLM API       (self-callback
-   :backlog/       :7771 connectors   Anthropic      NEURON_API_URL)
-   artifacts/      (MCP bridges)      format
-   projects
-```
-
-*Ports/topology verified*: proxy `:7779` and wrapper `:17779`
-(`mcp-proxy/src/main.el`, `mcp-wrapper/src/main.el`); soul `:7770`
-(`NEURON_PORT`, k8s `deployment-blue.yaml`); engram `:8742` (`entrypoint.sh`,
-`server.el:711`). The Axon backend, `neuron-connectd` (`:7771`), and the LLM are
-external dependencies the soul reaches over HTTP (`routes.el` `axon_get/post`,
-`connectd_get/post`).
-
-## The two external interfaces
-
-Neuron exposes exactly two surfaces, and it is worth being precise about the
-difference because they drive the whole component split:
-
-1. **The MCP surface** — the *tool* interface. MCP clients call tools
-   (`begin_session`, `remember`, `search_knowledge`, `inspect_graph`,
-   `cultivate`, …). This is the interface Claude Code and agents use. It is
-   delivered by the **proxy → wrapper** chain, which translates MCP JSON-RPC
-   into the soul's HTTP REST calls. The wrapper carries a catalog of ~90 tools
-   (`mcp-wrapper/src/main.el`).
-
-2. **The HTTP API** — the *cognitive* interface. The soul serves REST on
-   `:7770`. `routes.el` dispatches; `neuron-api.el` handles the cognitive
-   endpoints (`/api/neuron/*`). This same surface backs the chat product
-   (`/api/chat`, `/api/sessions`) and the studio UI (`/`).
-
-In production the MCP client connects to the soul's HTTP directly — the
-`neuron-mcp` ClusterIP Service targets `:7770` (`service.yaml`) and the
-proxy/wrapper chain is primarily the **local developer adapter** that lets a
-stdio MCP client speak to an HTTP soul. See `04-runtime-and-deployment.md`.
-
-## Component map (summary)
-
-The full VBD classification is in `01-vbd-decomposition.md`. In one glance:
-
-| Layer | Module(s) | Role |
-|---|---|---|
-| HTTP dispatch | `routes.el` | Manager — hand-written method/path dispatch |
-| Cognitive API | `neuron-api.el` | Managers + Engines — session/memory/knowledge/graph/cultivation handlers |
-| Request pipeline | `soul.el` `layered_cycle` | Manager — L1 safety → L2 stewardship → L3 imprint |
-| Boot + identity | `soul.el` | Manager — compose layers, seed identity graph, start server + daemon |
-| Autonomous cognition | `awareness.el` | Manager (`awareness_run`) + Engines (curiosity, attend, threat) |
-| Memory access | `memory.el` | Resource Accessor over the engram FFI/HTTP |
-| Store | `engram/server.el` + `el_runtime.c` | Accessor (HTTP) over the real graph engine |
-| Request-layer rules | `safety.el`, `stewardship.el`, `imprint.el` | Engines |
-| Conversation sessions | `sessions.el` | Manager (chat product) |
-| MCP transport | `mcp-proxy`, `mcp-wrapper` | Managers/Accessors — protocol boundary |
-| Build | `manifest.el`, `dist/soul.c`, El toolchain | amalgamation → `soul.c` → binary |
-
-## Reading guide
-
-- **`01-vbd-decomposition.md`** — the volatility analysis. Start here for *why*
-  the boundaries fall where they do. Contains the full Manager/Engine/Accessor/
-  Utility table and the honest list of where the real code diverges from VBD.
-- **`02-components.md`** — per-subsystem detail: routing, the cognitive API, the
-  memory & activation engine, the MCP transport chain. Read after 01.
-- **`03-data-and-memory.md`** — the engram graph model: node/edge structs,
-  layers, the two tier systems, write-protection, tombstone/supersede
-  immutability, persistence.
-- **`04-runtime-and-deployment.md`** — process/port topology, the end-to-end MCP
-  request path, local vs GKE blue/green, secrets/config.
-- **`05-el-and-build.md`** — the El language, the `elc`/`elb` toolchain, the
-  amalgamation → `soul.c` → binary pipeline, and the compile-time capability
-  gates.
-
-## A note on honesty
-
-Two facts shape everything below and are stated once here so the rest reads
-straight:
-
-1. **The most volatile logic — the activation and Hebbian math — lives in the
-   most stable-looking layer**, the C runtime (`el_runtime.c`). The El files in
-   this repo are largely a *Manager + Accessor shell* around that core. This
-   inverts the usual VBD expectation and is called out wherever it matters.
-2. **The immutability guarantee lives above the store, not in it.** The engram
-   HTTP server will hard-delete a node (`DELETE /api/nodes/:id` →
-   `engram_forget`, `server.el:322`). Immutability holds only because the
-   neuron-api / MCP layer routes every user-facing delete through *tombstone*
-   instead (`memory.el:46`). The invariant is a policy, not a property of the
-   accessor.

docs/architecture/01-vbd-decomposition.md

@@ -1,218 +0,0 @@
-# Neuron — VBD Decomposition
-
-> This is the load-bearing document. It applies Volatility-Based Decomposition
-> (VBD) to the *actual* neuron code, not an idealized version of it. VBD asks one
-> question — **what changes, why, and how often** — and draws component
-> boundaries around the answers so that a change lands inside one component
-> instead of rippling across many.
->
-> VBD's component taxonomy:
-> - **Managers** — stable orchestrators. They sequence use-cases and delegate;
->   they change only when the *shape* of a workflow changes.
-> - **Engines** — volatile business rules. The "how" that churns.
-> - **Resource Accessors** — isolate an external dependency (a store, an API) so
->   its volatility can't leak inward.
-> - **Utilities** — cross-cutting, low-volatility helpers.
->
-> Communication ideal: Managers orchestrate Engines and Accessors; Managers
-> prefer async/event coupling to each other; Engines are stateless-ish and never
-> reach external I/O directly; Accessors hide all I/O. We note below where neuron
-> honors this and where it doesn't.
-
-## The axes of change
-
-Before classifying modules, name the volatility. These are the axes along which
-neuron actually changes, ranked by observed churn (dated self-review comments in
-the source are the evidence — the code keeps a changelog in its own margins).
-
-### 1. Context / payload shaping — *highest churn*
-How much of the graph, and in what projected form, gets returned to a
-bounded MCP response. The `begin_session` / `compile_ctx` handlers and the
-`api_compact_*` helpers carry dense dated review comments (2026-07-30, -31)
-documenting repeated rework after unbounded payloads closed the MCP client
-socket (`neuron-api.el:90-317`). This changes because the *client's* context
-budget and the *shape* of "what's relevant right now" keep moving. The newest
-rework in this axis is the **relevance-ranked neighbor projection**
-(`api_compact_neighbors` + `api_neigh_*`) behind `inspect_graph`'s `compact=1`
-path — it is what keeps *self-load* (traversing the high-fanout identity anchors)
-from closing the socket. It is committed source, compiled into `dist/soul.c`.
-
-### 2. Autonomous-cognition policy
-What the idle soul chooses to think about: seed-domain selection, curiosity
-rotation, novelty gating, and the inbox verb-mapping in `attend()`. The
-`proactive_curiosity` / `auto_term_try_slot` machinery
-(`awareness.el:590-876`) has the deepest git-archaeology in the codebase
-(comments spanning 2026-05 → 2026-08). This is where the *behavior* of the
-agent is tuned.
-
-### 3. Epistemic & memory semantics
-Tiers, salience mapping, promotion/consolidation, the immutability policy
-(tombstone/supersede), and knowledge disposition. These evolve as the memory
-*philosophy* matures — e.g. `mem_forget` becoming a soft delete
-(`memory.el:70`), the salience-evolution pass in `mem_consolidate`
-(`memory.el:92-133`), the supersede-edge pattern (`neuron-api.el:394-428`).
-
-### 4. Safety & stewardship rules
-Crisis bell thresholds, agentic threat scoring, mission alignment, CGI
-continuity fingerprinting. `safety.el`, `stewardship.el`, and the threat
-scorer grafted onto `awareness.el:1286-1419` change on behavioral/regulatory
-pressure, independently of everything else.
-
-### 5. API / route surface growth
-New cognitive endpoints and their dispatch. `routes.el` grows structurally as
-tools are added; the `handle_request` if/else chain (`routes.el:358-753`) is
-edited on every surface change.
-
-*(A sixth axis — the activation/Hebbian numeric math — is real and volatile but
-is externalized to `el_runtime.c`. See "Divergences," point 6.)*
-
-## The component map
-
-Modules classified against the taxonomy, with the volatility that justifies each
-placement. Paths are repo-relative unless noted `foundation/…`.
-
-### Managers (stable orchestration)
-
-| Module / function | File | Why a Manager |
-|---|---|---|
-| `handle_request` | `routes.el:358-753` | Top-level HTTP dispatcher. Pure method/path routing; delegates every body of work. Changes only when the *route surface* (axis 5) changes, not when logic changes. |
-| Boot sequence | `soul.el:508-627` | Sequences load → seed → identity → serve → daemon. Highest stability; changes only on architecture shifts. |
-| `layered_cycle` | `soul.el:382-506` | Request use-case pipeline: L1 safety → L2 stewardship (continuity, mission, affect) → L3 imprint → L1 output validation. Orchestrates Engines; holds no rules itself. |
-| `awareness_run` / `one_cycle` | `awareness.el:1097-1284`, `1041-1095` | Daemon lifecycle + the perceive→attend→respond→record sequencer. Manager of the autonomous loop. |
-| Session CRUD | `sessions.el` | Orchestrates the immutable delete-then-recreate dance for conversation sessions (chat product). Manager-flavored, but leaks store detail (see Divergences). |
-| MCP proxy | `mcp-proxy/src/main.el` | Orchestrates transport: accept stdio, forward, retry, health-gate, wrap errors. |
-| MCP wrapper | `mcp-wrapper/src/main.el` | Orchestrates the JSON-RPC ⇄ REST translation, tool catalog, lifecycle (`initialize`/`tools/list`/`tools/call`). |
-
-### Engines (volatile business rules)
-
-| Module / function | File | Volatility it absorbs |
-|---|---|---|
-| `api_compact_*`, `begin_session`, `compile_ctx` | `neuron-api.el:90-317` | Axis 1 — context/payload shaping. The single most-reworked logic on the API side. |
-| `attend()` | `awareness.el:926-973` | Axis 2 — inbox content → action-verb ruleset. |
-| `proactive_curiosity`, `auto_term_try_slot` | `awareness.el:590-876` | Axis 2 — seed selection, stopword/IDF gates, tabu ring. Textbook Engine: highest churn. |
-| threat scoring | `awareness.el:1286-1419` | Axis 4 — additive command/path/history threat rules. |
-| `safety.el` (crisis/harm/bell) | `safety.el` | Axis 4 — crisis screening, bell thresholds, output validation. |
-| `stewardship.el` | `stewardship.el` | Axis 4 — mission alignment, CGI check, continuity fingerprint. |
-| `imprint.el` | `imprint.el` | Axis 2/3 — persona response + knowledge/memory surfacing per imprint. |
-| `mem_consolidate` | `memory.el:92-133` | Axis 3 — which nodes to strengthen; salience-evolution rules. |
-| salience/importance mapping | `neuron-api.el` (repeated in `remember`, `node_create`, `evolve_memory`, `cultivate`) | Axis 3 — importance-enum → salience float mapping. |
-| chat mode selection | `chat.el` (via `routes.el:433-440`, `597-604`) | plan / agentic / `layered_cycle` routing. |
-| **activation + Hebbian math** | `foundation/.../el_runtime.c` | Axis 6 — the true cognitive Engine, externalized to C. |
-
-### Resource Accessors (isolate external I/O)
-
-| Accessor | File | Dependency isolated |
-|---|---|---|
-| `mem_*` | `memory.el` | The engram FFI/HTTP. **The** memory Accessor — clean, single isolation point; every forget routes through `mem_tombstone` (`memory.el:46`). |
-| `engram_*` builtins + `server.el` | `el_runtime.c`, `foundation/el/engram/src/server.el` | The graph store over HTTP `:8742`. |
-| `axon_get` / `axon_post` | `routes.el` | The Axon backend (backlog, artifacts, projects, memories, non-neuron knowledge). |
-| `connectd_get` / `connectd_post` | `routes.el:303-324` | `neuron-connectd` bridge (`:7771`). |
-| `llm_call_system` / `llm_call_agentic` | runtime builtins (used in `routes.el:115`, chat) | The LLM. |
-| `ise_post`, `hebb_consolidate` | `awareness.el:101-148`, `64-99` | Durable engram HTTP (`/api/neuron/state-events`, `/api/edges/batch`). |
-| `render_studio` | `studio.el` | The UI surface. |
-
-### Utilities (cross-cutting, stable)
-
-`flag_true`, `strip_query`, `err_404/405` (`routes.el:14-91`);
-`api_json_escape`, `api_query_param/int`, `api_ok/err`, `api_nonempty`,
-`api_utf8_trunc`, `api_persisted` (`neuron-api.el:45-201`); `idle_*`/`pulse_*`
-counters, `elapsed_ms/human`, `make_action`, `embed_ok` (`awareness.el`);
-`session_make_content`, `aff_try_slot`, JSON builders (`sessions.el`, `soul.el`).
-Beneath all of these, the El runtime builtins (`json_*`, `http_*`, crypto, time)
-are the utility substrate every module shares.
-
-## Communication topology (as built)
-
-```
-   MCP client
-      │ JSON-RPC
-   proxy ──► wrapper ──► soul.handle_request ──► neuron-api.handle_api_*
-                                     │                    │
-                                     │ layered_cycle      │ engram_* builtins
-                                     ▼                    ▼
-                          safety / steward / imprint   memory.el (Accessor)
-                          (Engines)                       │
-                                                          ▼
-                                                   el_runtime.c graph
-                                                   engram HTTP :8742
-
-   awareness_run (daemon) ──perceive──► engram inbox (soul-inbox-pending tag)
-                          ──hebb_consolidate──► POST /api/edges/batch
-```
-
-Two things about coupling:
-
-- **Manager → Engine/Accessor is in-process and synchronous** (direct El calls),
-  which matches VBD: rules and I/O sit behind the Managers.
-- **Manager ↔ Manager is *not* the VBD async-event ideal.** It is synchronous
-  HTTP (soul → engram, soul → Axon) plus one genuine event-ish channel: the
-  **engram inbox**. The awareness daemon `perceive()`s by polling a
-  `soul-inbox-pending` tag and consumes trigger nodes
-  (`awareness.el:900-924`, `1090-1093`), and modules communicate asynchronously
-  by writing **InternalStateEvent** nodes. That is a partial actor/event
-  pattern, realized through the graph rather than a message bus.
-
-## Where reality diverges from VBD (call it out)
-
-Honest deviations, so no one reads this doc as a conformance certificate:
-
-1. **No route table.** Dispatch is a hand-written if/else chain in
-   `handle_request` (`routes.el:358-753`); there is no `register-route`
-   registry. Path params are sliced by hand (`str_slice` + `str_index_of`,
-   `routes.el:508-513, 539-541`) — one site carries an inline offset bug-fix
-   comment. Acceptable for a single dispatcher, but it means the "route surface"
-   Manager is edited manually on every change.
-
-2. **Store I/O leaks into Managers.** `routes.el` inlines engram export logic for
-   `/api/graph/edges` (`routes.el:394-422`, with a 2026-08-07 comment about a
-   read-route that corrupted the canonical snapshot). The `awareness_run` sync
-   block inlines `http_get /api/sync` + `engram_load_merge`
-   (`awareness.el:1219-1279`). `emit_heartbeat` (`awareness.el:201-549`, ~350
-   lines) mixes Utility (formatting), Accessor (HTTP/FFI reads), and Manager
-   (state-delta tracking) in one function. These are Accessor responsibilities
-   living inside orchestration — the clearest VBD smell in the codebase.
-
-3. **No authentication.** The only access control on the HTTP surface is per-IP
-   rate limiting (`routes.el:38-75`) plus `is_protected_node` on 15 hardcoded
-   identity IDs (`neuron-api.el:20-37`). There is no bearer/token check in the
-   dispatch path. Security is a cross-cutting concern only partially realized;
-   the deployment relies on a **single-trusted-client, internal-only** boundary
-   assumption (the `neuron-mcp` Service is ClusterIP, no external LB — see doc 04).
-
-4. **Immutability is enforced above the Accessor, not in it.** The engram store
-   itself hard-deletes (`DELETE /api/nodes/:id` → `engram_forget`,
-   `server.el:322`). The invariant "we never delete, we tombstone/supersede"
-   is a *routing policy* in `memory.el` / `neuron-api.el`, not a property of the
-   store. A caller that hits the raw engram HTTP bypasses it.
-
-5. **Mutation via delete-then-recreate.** Because nodes are immutable,
-   `sessions.el` mutates a session by deleting and recreating the node — flagged
-   non-atomic in its own comments (`sessions.el:303-308`, `:456`).
-
-6. **The volatile core is in the stable layer.** The activation, decay, and
-   Hebbian co-activation math — genuinely high-volatility numeric policy — lives
-   in `el_runtime.c`, the foundational runtime every binary links. The El files
-   here are a Manager+Accessor shell around it. This inverts VBD's usual
-   layering (volatile logic should sit *above* stable infrastructure) and is the
-   single most important thing to understand before changing memory behavior:
-   you often can't, from this repo, without touching `foundation/el`.
-
-7. **Vocabulary mismatch across layers.** The MCP-facing memory vocabulary
-   (tiers `note → lesson → canonical`, disposition
-   `experimental → … → deprecated`, importance enum `low/normal/high/critical`)
-   is **not** the engine's model. The engine uses cognitive tiers
-   `Working / Episodic / Semantic / Canonical` (a `tier` string field) plus
-   continuous `salience`/`importance`/`confidence` floats, and stores epistemic
-   tier/disposition as **tags** (`tier:canonical`, `disposition:stable`), not as
-   enforced state (`neuron-api.el:533`, `server.el:519-522`). The mapping is a
-   convention, not a guarded state machine. See `03-data-and-memory.md`.
-
-## Testing spiral (VBD heuristic, as observed)
-
-VBD recommends testing Engines first (pure logic), then Accessors (mock I/O),
-then Managers (integration). The repo has `tests/*.el` matching this instinct —
-`test_safety.el`, `test_bell_safety.el` (Engines), `test_layer_contract.el`
-(the Manager↔Engine JSON contract `layered_cycle` depends on), `test_soul_guard.el`
-(the boot Manager's seed guard), `test_sessions.el`. **Flag:** CI compiles and
-smoke-tests only (`dist/neuron --help`); it does **not** run these `.el` suites
-(`ci.yaml`). Whether they gate merges elsewhere is unverified — see doc 05.

docs/architecture/02-components.md

@@ -1,278 +0,0 @@
-# Neuron — Component Detail
-
-> Per-subsystem detail: routing/dispatch, the cognitive API, the memory &
-> activation engine, and the MCP transport chain. For the *why* behind these
-> boundaries read `01-vbd-decomposition.md` first; this doc is the *what* and
-> *how*, grounded in file citations.
-
----
-
-## 1. Routing / dispatch — `routes.el`
-
-**Responsibility:** turn an inbound HTTP request into a handler call. One
-function does it.
-
-- **Entry point:** `handle_request(method, path, body) -> String`
-  (`routes.el:358-753`). Structure: branch by method (`GET` `:384`, `POST`
-  `:549`, `DELETE` `:726`, `PATCH` `:739`), then an ordered sequence of exact
-  (`str_eq`) and prefix (`str_starts_with`) tests against the cleaned path.
-  First match wins. There is **no route table and no `register-route`** — this is
-  a deliberate hand-written dispatcher.
-- **Path params** are extracted manually with `str_slice`/`str_index_of`
-  (session id `:539-541`, typed-node type `:508-513`).
-- **Query strings** stripped up front by `strip_query` (`:77-83`); the raw path
-  (with query) is still passed to handlers that read params.
-- **Pre-dispatch middleware** (cross-cutting, inline): an activity timestamp
-  (`state_set("soul.last_activity_ts", …)` `:367`) and **rate limiting**
-  (`rate_limit_check(ip, path)` `:38-75`, `:372-378`) — a per-IP 60 req/min
-  sliding window, `/health` exempt, loopback skipped, returns a 429 body.
-- **Auth:** none in the dispatch path. See doc 01, Divergence 3.
-- **Fallbacks:** `err_404` / `err_405`.
-
-**Collaborators:** delegates to `neuron-api.el` (`/api/neuron/*`), `sessions.el`
-(`/api/sessions/*`), `chat.el` (`/api/chat`, `/dharma/recv`), the Axon Accessor
-(`axon_get/post` for `/api/backlog|artifacts|projects|memories|knowledge`),
-`connectd_*` (`/api/connectors*`), `studio.el` (`/`), and engram builtins for the
-raw `/api/graph*` reads.
-
-**Route surface** (grouped; full table with line numbers is in the survey notes):
-
-| Group | Representative routes | Handler home |
-|---|---|---|
-| Session/context | `/api/neuron/session/begin`, `/api/neuron/ctx`, `/api/sessions*` | neuron-api, sessions.el |
-| Memory | `/api/neuron/memory`, `/recall`, `/memory/{evolve,forget,delete,update}`, `/node/{create,update,delete}` | neuron-api |
-| Knowledge | `/api/neuron/knowledge/{search,capture,evolve,promote}`, `/knowledge` | neuron-api |
-| Graph/activation | `/api/neuron/graph`, `/graph/link`, `/api/graph*`, `/list/:type` | neuron-api + engram builtins |
-| Cultivation/self | `/api/neuron/cultivate`, `/lineage`, `/imprint/*`, `/synthesize` | neuron-api, routes.el |
-| Processes/config | `/api/neuron/processes{,/define}`, `/config{,/tune}` | neuron-api |
-| State/consolidate | `/api/neuron/state-events`, `/consolidate` | neuron-api |
-| Backlog/artifacts | `/api/backlog`, `/artifacts`, `/projects`, `/memories` | Axon (HTTP) |
-| Chat/NLG | `/api/chat`, `/see`, `/elp/chat`, `/dharma*`, `/nlg*` | chat.el, elp-input.el |
-| Health/UI | `/health`, `/lineage`, `/` | routes.el, studio.el |
-
----
-
-## 2. The cognitive API — `neuron-api.el`
-
-**Responsibility:** the `/api/neuron/*` handlers — the operations that read and
-write the engram as *cognition* (session, memory, knowledge, graph, config,
-processes, state, cultivation). The file header notes these were migrated **out
-of the MCP wrapper's HTTP calls into in-process engram builtins**
-(`neuron-api.el:3-9`) — so most handlers call the store directly, no HTTP
-round-trip.
-
-**Primary collaborators** are the engram builtins (`engram_node_full`,
-`engram_search_json`, `engram_activate_json`, `engram_scan_nodes_json`,
-`engram_scan_nodes_by_type_json`, `engram_neighbors_json`, `engram_connect`,
-`engram_get_node_json`, `engram_stats_json`, `engram_save`) and `memory.el` for
-tombstoning.
-
-**Handler groups:**
-
-- **Session / context** — `handle_api_begin_session` (`:273-301`),
-  `handle_api_compile_ctx` (`:305-317`). Pull `engram_stats_json`, run
-  spreading activation (`engram_activate_json`, depth-1 for begin, depth-2 for
-  ctx), scan recent `InternalStateEvent`s, then **project the result through the
-  compaction helpers** so the payload can't overflow the MCP client's context.
-  This is Engine work (axis 1) inside a Manager-shaped entry point.
-
-- **Memory** — `handle_api_remember` (`:322-348`): maps `importance` → salience,
-  injects a `project:<name>` tag, writes a `Memory`/`Episodic` node, then
-  **read-back-verifies** persistence (`api_persisted`). Deletes are **tombstone,
-  never hard delete** — `node_delete` / `memory_delete` / `forget` all route
-  through `tombstone_node` → `mem_tombstone`. Updates/evolves are **immutable
-  supersede** — `node_update` (`:397-429`), `evolve_memory` (`:711-735`) create a
-  new node and wire `engram_connect(new, old, "supersedes")`.
-
-- **Knowledge** — `search_knowledge` (`:458-478`, falls back to
-  `engram_activate_json(q,2)` when lexical search returns nothing),
-  `browse_knowledge`, `capture_knowledge` (`:492-504`), `evolve_knowledge`,
-  `promote_knowledge` (`:526-542`, writes a canonical-tier node + supersede
-  edge). Evolve/promote respect `is_protected_node`.
-
-- **Graph** — `handle_api_inspect_graph` (`:778-813`): resolves a named anchor
-  (`self`/`neuron` → `kn-efeb4a5b…`, `values` → `kn-5b606390…`) or an explicit
-  id, then `engram_neighbors_json(resolved, depth, "both")`. By default this is a
-  plain neighbor traversal (byte-identical to the old behavior, so the studio app
-  is unaffected). **When called with `compact=1` (or `true`) it returns a
-  relevance-ranked projection** (`:804-810`): the neighborhood is ranked and the
-  top **`k`** neighbors (default 12) keep a UTF-8-safe content snippet (default
-  `snip=600`) via `api_neigh_full`, while the remainder collapse to lightweight
-  `{id,label,node_type,tier,edge,pointer:true}` stubs via `api_neigh_pointer`.
-  This bounds a high-fanout identity anchor (voice, writing-imprint, self-root)
-  from ~670 KB to ~25 KB so the MCP transport no longer socket-closes on
-  self-load. The MCP wrapper appends `&compact=1` on its inspectGraph/fetch-by-id
-  path; the studio app omits the flag and is unchanged.
-  `handle_api_link_entities` (`:818-…`) creates edges but blocks edges *into*
-  protected nodes.
-
-- **Cultivation** — `handle_api_cultivate` (`:781-839`): dispatches on
-  `operation` (evolve_knowledge / evolve_memory / forget / link_entities) and
-  performs the same engram ops **but skips `is_protected_node`** — the sanctioned
-  identity-write path, gated by convention to Will's explicit cultivation
-  sessions.
-
-- **Config / processes / state-events / consolidate** — config anchors + a
-  `ConfigEntry` node search (`:616-639`), `tune_config` (`:642-653`),
-  `browse_processes` / `define_process` (`:547-568`), state-event log/list
-  (`:575-610`), and `consolidate` (`:855-880`, an `engram_save` snapshot plus an
-  optional `SessionSummary` node).
-
-**The projection/compaction layer** (a real, recurring concern) lives in
-`api_compact_node` (`:132-148`), `api_compact_node_array` (`:152-165`),
-`api_compact_activated` (`:170-189`), and `api_utf8_trunc` (`:116-127`). These
-**cap array length and truncate each node to identity + a bounded UTF-8-safe
-content snippet.** Their consumers are `begin_session` and `compile_ctx`.
-The design principle is the important part: *the API returns a relevance-bounded
-projection of the graph, not the graph.* That bounding started as
-length-capping + activation-ordering; it now also includes a **relevance-ranked
-neighbor projection** — `api_compact_neighbors` (`:288-317`), backed by
-`api_neigh_better`/`api_neigh_rank` (relevance ordering), `api_neigh_full`
-(top-K, snippet), `api_neigh_pointer` (the rest, stub), and `api_float_or`. This
-is **committed fact, not an in-flight concern**: it is the `compact=1` path of
-`handle_api_inspect_graph` above, and it is what makes self-load survive the MCP
-transport. It is compiled into `dist/soul.c` (this PR regenerated the
-amalgamation so CI ships it — see doc 05).
-
----
-
-## 3. Memory & activation engine
-
-This subsystem spans three files in this repo (`memory.el`, `awareness.el`,
-`soul.el`) and one in `foundation` (`el_runtime.c`). The split matters: **the
-math is in C; the El files orchestrate, persist, and instrument it.**
-
-### 3a. Memory access — `memory.el` (the Accessor)
-
-The single isolation point over the engram FFI. Key functions:
-
-| Fn | Lines | Backing call | Notes |
-|---|---|---|---|
-| `mem_store` | `5-28` | `engram_node_full` + read-back | verified write |
-| `mem_remember` | `30-32` | `mem_store` | label `soul-memory` |
-| `mem_recall` | `34-36` | `engram_activate_json(query, depth)` | **spreading-activation recall** (mutates WM) |
-| `mem_search` | `38-40` | `engram_search_json` | pure lexical scan (no WM side-effect) |
-| `mem_strengthen` | `42-44` | `engram_strengthen` | salience bump |
-| `mem_tombstone` | `52-62` | `engram_node_full` + `engram_connect` | the one canonical soft-delete |
-| `mem_forget` | `70-72` | `mem_tombstone` | soft delete (no longer hard) |
-| `mem_consolidate` | `92-133` | `engram_wm_top_json`, `engram_strengthen` | salience-evolution pass |
-| `mem_save` / `mem_load` | `135-148` | `engram_save/load` | snapshot I/O |
-
-Note the distinction between **recall and search**: `mem_recall` fires spreading
-activation (and warms working memory as a side effect); `mem_search` is a passive
-lexical lookup. Tiers here are `tier_working` / `tier_episodic` / `tier_canonical`
-(`memory.el:1-3`) — see doc 03 for how these relate to the engine's tier field
-and to the MCP surface vocabulary.
-
-### 3b. Autonomous cognition — `awareness.el` (the daemon)
-
-`awareness.el` is the **idle-cognition daemon plus observability**, not
-emotional-state code. `awareness_run()` (`:1097-1284`) is the master loop,
-launched last from `soul.el:627`. Each tick (`SOUL_TICK_MS`, ~200ms):
-
-1. **`one_cycle()`** (`:1041-1095`) — the cognitive step:
-   `perceive()` (`:900-924`, gated on a `soul-inbox-pending` tag, then
-   `engram_activate_json`) → `attend()` (`:926-973`, parse trigger content into
-   an action verb: remember / search / activate / strengthen / forget /
-   consolidate / respond) → `respond()` (`:975-1029`, dispatch to the `mem_*`
-   fns) → `record()` (`:1031-1039`, emit an InternalStateEvent) → consume the
-   trigger.
-2. **Heartbeat** (every 60s): `hebb_consolidate()` **then** `emit_heartbeat()`
-   then `mem_save` snapshot (`:1189-1197`).
-3. **Curiosity scan** (every 30s when idle): `proactive_curiosity()`
-   (`:701-876`) rotates 4 seed-domain sets, activates a seed, strengthens the
-   top result **only if it changed** (novelty-gated), and derives an
-   autobiographical seed from the top-10 working-memory nodes with
-   stopword/IDF/tabu filtering.
-4. **Engram sync** (every 10 min): `GET /api/sync` → `engram_load_merge` →
-   telemetry prune.
-
-Two functions carry most of the file's weight and volatility:
-- **`hebb_consolidate()`** (`:64-99`) — the durable-learning write-back. It drains
-  newly-formed co-activation edges (`engram_hebb_drain_json(64)`) and POSTs them
-  as one batch to `/api/edges/batch` (`:94`). The comment block (`:33-63`)
-  records that before this path existed the soul threw away ~1,198 learned
-  edges per restart — the daemon is where **essentially all co-activation
-  happens**, and this is how it survives.
-- **`emit_heartbeat()`** (`:201-549`, ~350 lines) — assembles ~50 gauges (WM
-  saturation/churn, Hebbian candidate/edge counts, embedding coverage, corpus
-  health) into one ISE. Pure observability; a fat, churny Accessor/Utility mix.
-
-A **threat scorer** (`:1286-1419`) is grafted onto the end — command/path/history
-additive scoring, ≥70 blocks a tool call. Cross-cutting agentic-safety policy,
-unrelated to memory mechanism.
-
-### 3c. Identity & the request pipeline — `soul.el`
-
-`soul.el` is the top-level program (`cgi "neuron-soul"`, `:12-17`) and imports
-every other module (`:1-10`). It owns:
-
-- **The identity graph.** `init_soul_edges()` (`:19-92`) hard-wires a `self_root`
-  node linked by `identity` edges (weight 0.95) to family/origin/value nodes,
-  plus a dense `co-value` mesh (weight 0.7) among 8 value nodes.
-  `ensure_self_canonical_bridge()` (`:101-110`) links the public traversal-root
-  anchor (`kn-efeb4a5b`) to the curated self node via `canonical-self` edges.
-  `load_identity_context()` (`:153-240`) loads intellectual-DNA / values /
-  memory-philosophy content into a state key for prompt injection.
-- **Boot orchestration** (`:508-627`): load snapshot → optional first-boot seed
-  (guarded) → identity context → persona-from-env → boot-count increment →
-  session-start event → genesis-only edge init → `http_serve_async(port,
-  "handle_request")` → `awareness_run()`.
-- **The request pipeline.** `layered_cycle()` (`:382-506`) — a 4-layer stack for
-  user input: **L1** safety screen (`safety_screen`) → **L2a** continuity/
-  behavioral (`steward_session_check`) → **L2b** mission alignment
-  (`steward_align`) → **L2c** affective-context injection → **L3**
-  `imprint_respond` → **L1** output validation (`safety_validate`). Hard-bell
-  inputs bypass the upper layers. The JSON contract between these layers is
-  pinned by `tests/test_layer_contract.el`.
-
-### 3d. Where the activation math actually is
-
-`el_runtime.c` implements the two-layer activation model
-(`background_activation` via BFS fan-out, then `working_memory_weight` via an
-executive filter), ACT-R base-level learning (per-node access-timestamp ring
-buffer), 768-dim semantic embeddings, and Hebbian eligibility traces. Retrieval
-is **spreading activation, not query**:
-`strength = parent_strength × edge_weight × target_salience ×
-cosine(query, target)`. The El files never compute this — they seed it
-(`engram_activate_json`), harvest it (`engram_hebb_drain_json`), and persist it.
-See `03-data-and-memory.md`.
-
----
-
-## 4. The MCP transport chain — `mcp-proxy`, `mcp-wrapper`
-
-The chain exists because two boundaries vary independently: the *client
-transport* (stdio MCP JSON-RPC) and the *soul's protocol* (HTTP REST). Each hop
-absorbs one.
-
-- **`mcp-proxy/src/main.el`** (listens `:7779`) — a **byte-forwarder**. It
-  accepts the client connection, forwards to the wrapper, and adds resilience:
-  retry, health-gating, and a well-formed error envelope so a downstream hiccup
-  never surfaces to the client as a broken pipe. It holds no MCP semantics —
-  pure transport orchestration.
-
-- **`mcp-wrapper/src/main.el`** (listens `:17779`) — the **protocol translator**.
-  It speaks MCP JSON-RPC to the client and REST to the soul (`:7770`), owns the
-  MCP lifecycle (`initialize`, `tools/list`, `tools/call`), and carries the
-  **tool catalog** (~90 tools) that clients enumerate. `dispatch_tool_call` maps
-  each tool to a soul REST endpoint. It also fires a **spread-activation side
-  effect** (`fire_activation`) — after relevant calls it issues a `/recall` to
-  warm related nodes, so tool use itself nudges working memory. The tool schemas
-  in the catalog are largely name-only stubs — flag as a place where richer
-  schemas could live.
-
-- **Manifests** (`mcp-proxy/manifest.el`, `mcp-wrapper/manifest.el`) declare the
-  build entry and package metadata for each transport binary.
-
-**End-to-end (one `tools/call`):** client → proxy (`:7779`, forward+retry) →
-wrapper (`:17779`, JSON-RPC→REST, catalog dispatch) → soul (`:7770`,
-`handle_request` → `handle_api_*`) → engram builtins → (HTTP `:8742` when in HTTP
-mode). The response walks back up, and the wrapper may fire a `/recall` warm-up
-on the way. The full sequence is drawn in `04-runtime-and-deployment.md`.
-
-**VBD reading:** proxy and wrapper are Managers of transport; the wrapper is also
-the Accessor that isolates the *MCP protocol* boundary from the soul (the soul
-knows only HTTP). The multi-hop shape is justified: the client transport, the
-protocol translation, and the cognition each change for different reasons and are
-deployed/updated independently.

docs/architecture/03-data-and-memory.md

@@ -1,233 +0,0 @@
-# Neuron — Data & Memory (the Engram Graph Model)
-
-> The engram is neuron's durable substrate. This document describes the graph
-> model: node/edge structure, the consciousness layers, the two distinct tier
-> systems, write-protection, the tombstone/supersede immutability model, and
-> persistence. Sources: the runtime `el_runtime.c` (where the graph engine
-> physically lives — "the runtime IS the database",
-> `foundation/el/engram/src/server.el:1-6`), the engram HTTP face
-> `server.el`, and the neuron-layer semantics in `memory.el` / `neuron-api.el`.
->
-> Runtime path analyzed:
-> `foundation/el/lang/releases/v1.0.0-20260501/el_runtime.c`.
-
-## Where the model lives
-
-The engram is **not** a database library. The graph, the activation math, and
-Hebbian learning are compiled C in `el_runtime.c`; `server.el` is a thin HTTP
-server that exposes them on `:8742`; the storage format is a single JSON
-snapshot. There is no SQL, no SQLite, no append log. Keep this in mind: the
-"schema" below is C structs, not tables.
-
-> **Design-doc caveat.** `engram/README.md` describes a Rust/`sled`/`bincode`
-> `EngramDb` with a `NodeType::Concept` enum. That is **aspirational/legacy
-> narrative** — it does not match the shipped C engine. Treat the README as
-> design story, not as the implementation. *(unverified against runtime)*
-
-## Nodes
-
-`EngramNode` — `el_runtime.c:5958-6018+`. Every node carries:
-
-| Field group | Fields | Notes |
-|---|---|---|
-| Identity/content | `id`, `content`, `node_type`, `label`, `tier`, `tags`, `metadata` | all `char*` (`:5959-5965`) |
-| Epistemic weights | `salience`, `importance`, `confidence` (double), `temporal_decay_rate` | per-node decay λ override; 0 = use global (`:5966-5969`) |
-| Access history | `activation_count`, `last_activated`, `created_at`, `updated_at` | `:5970-5973` |
-| Two-layer activation | `background_activation` (Layer 1, BFS fan-out), `working_memory_weight` (Layer 2, executive filter), `suppression_count` | context compilation uses **only** `working_memory_weight` (`:5974-5991`) |
-| Consciousness layer | `layer_id` | default 1 = CORE_IDENTITY (`:5996`) |
-| ACT-R learning | `access_ts[K]` ring buffer, `access_head`, `access_filled`, `wm_anchor` | base-level learning (`:5997-6008`) |
-| Semantics | `emb` (768-dim nomic-embed-text vector, lazily backfilled), `emb_dim` | `:6009-6016` |
-| Hebbian | eligibility trace | `:6017+` |
-
-### Node types are strings, not an enum
-
-`node_type` is a free `char*`, defaulting to `"Memory"` when unset
-(`el_runtime.c:7401`, `server.el:159`). There is **no closed node-type enum** in
-the shipped engine. Two consequences:
-
-- The runtime *special-cases* a handful of type strings for activation
-  thresholds (`engram_type_threshold`, `:5933-5955`): `DharmaSelf`/`Safety`
-  (0.05, fire easily), `Belief`/`Entity` (0.30), `Knowledge` (0.20), everything
-  else `Note`/`Memory`/`Working` (0.40). `InternalStateEvent` and `Tag` are
-  **excluded from working-memory promotion** (`:6674-6676`, `:7368-7370`).
-- Type strings the neuron layer actually writes: `Memory` (default), `Knowledge`
-  (`server.el:549`), `InternalStateEvent` (`server.el:493`), `Tombstone`
-  (`memory.el:55`), `Conversation` (session nodes, `sessions.el`), `Persona`
-  (`soul.el:250-292`), plus identity/value `Knowledge` nodes.
-
-The types the MCP surface names — `Self`, `BacklogItem`, `SessionSummary`,
-`Artifact`, `Process`, `ConfigEntry` — are **`node_type` string conventions set
-by higher neuron/Axon layers**, not runtime-known types. Where `BacklogItem` /
-`Artifact` are set was not in the files read (they route to the Axon backend, doc
-02) — **flag as unverified/TODO** for a human pass.
-
-## Edges
-
-`EngramEdge` — `el_runtime.c:6701-6730+`. Directed, typed, weighted:
-
-| Field | Meaning |
-|---|---|
-| `id`, `from_id`, `to_id`, `relation` | typed relation string |
-| `weight` (double) | **authored** strength — never mutated by activation |
-| `hebb` (double) | **learned** co-activation potentiation — the fraction of recent activations in which both endpoints were in working memory together; strictly separate from `weight` |
-| `inhibitory` (int flag) | if set, activating the source **suppresses** the target's WM weight instead of exciting it |
-| `confidence`, `created_at`, `updated_at`, `last_fired`, `layer` | — |
-
-The **`hebb` field is the co-activation weight** — the Hebbian/LTP channel — kept
-deliberately separate from the static authored `weight`. Edges are created via
-`engram_connect(from, to, weight, relation)` (`server.el:253`).
-
-**Relation strings observed:** `associates` (default, `server.el:248`),
-`identity`, `co-value`, `birthday-twin`, `canonical-self` (`soul.el:37-108`),
-`supersedes`, `tombstones`, `contains`, `tagged` (`neuron-api.el`,
-`el_runtime.c:6168`).
-
-## Consciousness layers
-
-Orthogonal to memory tiers, the engram has five canonical **layers**
-(`el_runtime.c:5919-5924`):
-
-| id | Name | activation_priority | Role |
-|---|---|---|---|
-| 0 | SAFETY | 0 (fires earliest) | deepest / limbic |
-| 1 | CORE_IDENTITY | — | **default** for all nodes (`ENGRAM_LAYER_DEFAULT`, `:7423`) |
-| 2 | DOMAIN | — | domain knowledge |
-| 3 | IMPRINT | — | persona overlay |
-| 4 | SUIT | — | outermost |
-
-`EngramLayer` (`:6731-6738`) carries `activation_priority` (lower fires first),
-`suppressible` (can higher layers suppress it?), `transparent` (invisible to
-introspection?), and `injectable` (add/remove at runtime?). Layers are managed
-via `engram_add_layer` / `engram_node_layered` / `engram_list_layers`. This is
-the identity-vs-domain-knowledge stratification, independent of the tier system
-below.
-
-## Two tier systems — do not conflate them
-
-This is the single most important clarification in the data model, and the source
-of the vocabulary mismatch flagged throughout this set.
-
-### A. Cognitive memory tiers — the `tier` field
-`Working` / `Episodic` / `Semantic` / `Procedural` (and `Canonical` in use).
-Runtime default `"Working"` (`el_runtime.c:7408`; `README.md:41-49`). Nodes
-**migrate between these by salience decay/reinforcement**, driven by the runtime.
-Salience decays as `importance × 1/(1 + days_since) × ln(count + 1)`
-(`README.md:57-62`). `memory.el` exposes `tier_working`/`episodic`/`canonical`
-helpers (`memory.el:1-3`); `soul.el` writes `Semantic`-tier persona nodes
-(`:267`, `:282`). So the live tier set is **{Working, Episodic, Semantic,
-Procedural, Canonical}** with continuous salience/importance/confidence floats.
-
-### B. Epistemic tiers & disposition — tags, not runtime concepts
-The MCP-facing vocabulary — tiers `note → lesson → canonical`, disposition
-`experimental → provisional → stable → deprecated` — is **not enforced anywhere
-in `el_runtime.c`.** It is stored as **tags**:
-
-- Knowledge capture preserves the incoming epistemic tier as a `tier:<x>` tag
-  rather than mapping onto a cognitive tier — deliberately, to avoid a lossy
-  mapping (`server.el:519-522, 544`).
-- `promote_knowledge` writes a canonical node tagged
-  `["Knowledge","tier:canonical","disposition:stable"]` (`neuron-api.el:533`).
-
-There is **no state machine** validating `experimental → … → deprecated`.
-Disposition and epistemic tier are convention-by-tag. *(Flag: not structurally
-guarded. The exact MCP-enum → tag/float mapping is not fully traced in the files
-read — unverified/TODO.)*
-
-## Write-protection
-
-`is_protected_node(id)` (`neuron-api.el:20-37`) is a **hard-coded allowlist of 15
-identity/value node IDs** — the self root, the values hub, intellectual-dna,
-memory-philosophy, voice, and the 8 value nodes. Handlers that could mutate the
-graph (tombstone / supersede / evolve / connect) check it and return HTTP 403
-`api_err_protected` (`:39-41`) for a protected target (checked at `:384, 511,
-692, 705, 746, 768`). Edges *into* a protected node are also blocked
-(`handle_api_link_entities`).
-
-**The one sanctioned override** is `POST /api/neuron/cultivate`
-(`neuron-api.el:781-816`) — it performs the same ops with the protection check
-skipped, gated by convention to Will's explicit cultivation sessions. The self
-layer is writable, but only through a deliberate door.
-
-## Immutability — tombstone, never delete
-
-Engram nodes are immutable (`memory.el:64-69`). The model is:
-
-- **Tombstone** — `mem_tombstone(node_id)` (`memory.el:46-71`) **keeps the node
-  and all its edges**, creates a `Tombstone` marker node
-  (`content = target id`, `label = "tombstone:<id>"`) and wires a `tombstones`
-  edge (weight 1.0). It never calls `engram_forget`. This is *the* one canonical
-  delete — every user-facing forget path routes through it. Default bounded reads
-  hide tombstoned nodes (`memory_hide_tombstoned`, `neuron-api.el:239-249`);
-  `?include_deleted=1` recovers them.
-- **Supersede** — updates/evolves (`neuron-api.el:394-428, 506-541, 715-734`)
-  create a **new** node with the new content, wire a `supersedes` edge new→old
-  (weight 0.9, or 0.95 for promote), and **keep the original**. The response
-  returns both ids so the caller re-points. This is the `supersedes_id`
-  pattern: new node linked, old preserved, full audit trail.
-
-> **The hole to know about.** The raw runtime `engram_forget` **does** hard-delete
-> (frees node + edges, `el_runtime.c:7647`), and the engram HTTP route
-> `DELETE /api/nodes/:id` calls it directly (`server.el:322-328`). Immutability
-> is therefore an invariant of the **neuron-api / MCP layer routing**, not of the
-> store. A client that hits engram HTTP directly can bypass it. *(flag)*
-
-`engram_forget` is also used *internally* for genuine GC: boot-counter pruning
-(`memory.el:184`), session-summary/telemetry pruning (`soul.el:369`,
-`sessions.el`). Those are bounded housekeeping, not user deletes.
-
-## Persistence, snapshots, backups
-
-- **Storage:** a single JSON snapshot `snapshot.json` under `ENGRAM_DATA_DIR`,
-  written by `engram_save` / read by `engram_load` (`el_runtime.c:9660+`; format
-  `{"nodes":[...],"edges":[...]}`). In prod that dir is the RWO PVC mount `/data`
-  (doc 04).
-- **Write policy:** `persist_canonical()` writes the **full** snapshot after every
-  durable write (`server.el:133-141`). The batch-edge route snapshots **once per
-  batch** to avoid ~150 GB/day of writes from Hebbian edge churn
-  (`server.el:258-305`) — this is why `hebb_consolidate` batches (doc 02).
-- **Boot safety:** on load, engram writes `snapshot.boot-backup.json` (good load)
-  or `snapshot.failed-load.json` (a non-empty file that parsed to 0 nodes)
-  (`server.el:718-734`). Read routes export to scratch paths
-  (`.scan-export.json`, `.sync-export.json`) and **never** touch the canonical
-  (`server.el:207-223, 418-437`) — a guard added after a read-route corrupted the
-  snapshot.
-- **Off-cluster backup:** a Kubernetes CronJob (`engram-backup`) tars `/data`
-  every 15 minutes to `gs://neuron-db-backup/gke/neuron-prod/` and keeps the last
-  96 (24h) (`infrastructure/platform/k8s/neuron-mcp/backup-cronjob.yaml`).
-- **Retention:** InternalStateEvent telemetry pruned at 48h
-  (`ENGRAM_ISE_RETENTION_MS`, `server.el:485-499`).
-
-> **Data-dir mismatch to flag:** the `server.el` header comment says the default
-> is `~/.neuron/engram` (`:16`) but the code defaults to `/tmp/engram`
-> (`:135, 717`). Prod overrides both via `ENGRAM_DATA_DIR=/data`. *(unverified —
-> which default is intended)*
-
-## The engram HTTP surface (`:8742`)
-
-Dispatcher `handle_request` (`server.el:592-707`). Auth: `ENGRAM_API_KEY`; GETs
-always allowed, mutations require `"_auth":"<key>"` in the JSON body
-(`server.el:578-588`).
-
-| Endpoint | Purpose |
-|---|---|
-| `GET /health`, `GET /` | health + live node/edge counts |
-| `POST /api/nodes`, `GET /api/nodes`, `GET /api/nodes/:id`, `DELETE /api/nodes/:id` | node CRUD (DELETE = hard `engram_forget`) |
-| `GET /api/edges`, `POST /api/edges`, `POST /api/edges/batch`, `GET /api/neighbors/:id?depth` | edge ops + traversal |
-| `POST\|GET /api/activate?q&depth`, `POST\|GET /api/search` | spreading activation vs lexical search |
-| `POST /api/strengthen` | Hebbian potentiation |
-| `POST /api/save`, `/api/load`, `/api/load-merge` | snapshot control |
-| `GET /api/sync` | soul daemon periodic pull |
-| `GET /api/embed-backfill`, `GET /api/similarity?a&b` | embeddings + cosine |
-| `POST /api/neuron/state-events` (auth-exempt), `POST /api/neuron/knowledge/capture` | neuron-layer helpers |
-| `GET /api/stats`, `/api/act-stats`, `/api/text-health` | telemetry |
-
-## Retrieval model (summary)
-
-Retrieval is **spreading activation, not query matching**:
-`strength = parent_strength × edge_weight × target_salience ×
-cosine(query, target)` — multiplicative, top-N, with the two-layer
-background → working-memory promotion (`README.md:27-36`; `el_runtime.c:5892+,
-6094+`). `mem_recall` / `/api/activate` fire this and mutate WM; `mem_search` /
-`/api/search` are passive lexical scans. The cognitive API's `begin_session` and
-`compile_ctx` return a **bounded projection** of the activated set, never the raw
-graph (doc 02, §2).

docs/architecture/04-runtime-and-deployment.md

@@ -1,178 +0,0 @@
-# Neuron — Runtime & Deployment
-
-> Process/port topology, the end-to-end MCP request path, local vs GKE
-> blue/green production, and a high-level view of secrets/config. Grounded in
-> `entrypoint.sh`, `scripts/blue-green-deploy.sh`, the k8s manifests under
-> `infrastructure/platform/k8s/neuron-mcp/`, and `.gitea/workflows/`.
-
-## Process & port topology
-
-A running neuron is **two processes in one container**: the soul and the engram,
-started by `entrypoint.sh`.
-
-```
- container (one pod)
- ┌──────────────────────────────────────────────────────────┐
- │  entrypoint.sh                                             │
- │    1. start engram  (background)   ── listens :8742       │
- │    2. wait /health up to 60s                              │
- │    3. exec soul (PID 1 foreground)  ── listens :7770      │
- │                                                           │
- │   soul  :7770  ──HTTP──►  engram  :8742                    │
- │   (ENGRAM_URL=http://localhost:8742, HTTP mode)           │
- │                                                           │
- │   /data  (PVC mount) ◄── engram snapshot.json             │
- └──────────────────────────────────────────────────────────┘
-```
-
-- `entrypoint.sh` starts engram with `ENGRAM_BIND=:8742` and
-  `ENGRAM_DATA_DIR=/data`, polls `http://localhost:8742/health` (up to 60s;
-  Autopilot cold starts are slow), then `exec`s the soul. `SOUL_ENGRAM_PATH` is
-  deliberately unset so `ENGRAM_URL` triggers **HTTP mode** (soul talks to engram
-  over localhost HTTP, not an in-process embed).
-- EL HTTP runtime is tuned down for co-located calls: `EL_HTTP_TIMEOUT_MS=10000`,
-  `EL_HTTP_CONNECT_TIMEOUT_MS=3000` (`entrypoint.sh`).
-
-### Full port map
-
-| Port | Process | Role | Source |
-|---|---|---|---|
-| 7779 | mcp-proxy | MCP client entry; byte-forward + retry | `mcp-proxy/src/main.el` |
-| 17779 | mcp-wrapper | MCP JSON-RPC ⇄ soul REST; tool catalog | `mcp-wrapper/src/main.el` |
-| 7770 | soul | HTTP cognitive API + `handle_request` | `NEURON_PORT`, `deployment-blue.yaml` |
-| 8742 | engram | graph store HTTP | `entrypoint.sh`, `server.el:711` |
-| 7771 | neuron-connectd | MCP connector bridges | `routes.el` `connectd_*` |
-
-**Local vs prod, an important distinction.** The proxy → wrapper chain is the
-**local developer adapter**: a stdio MCP client (Claude Code) needs to reach an
-HTTP soul, so the proxy/wrapper translate and add resilience. In **production**,
-the `neuron-mcp` Kubernetes Service is a ClusterIP that targets the soul's
-`:7770` directly (`service.yaml`) — external access is "to be wired via
-Cloudflare Tunnel later" (annotation, same file). So in prod the MCP/HTTP
-boundary is the soul's own HTTP surface; the proxy/wrapper are not (yet) in the
-cluster path. *(inference from the ClusterIP-only Service + the local-only
-proxy/wrapper binaries.)*
-
-## The MCP request path (end to end)
-
-A single `tools/call` from an MCP client, local topology:
-
-```
- client                proxy :7779         wrapper :17779        soul :7770            engram :8742
-   │  JSON-RPC             │                    │                    │                     │
-   │ tools/call ─────────► │  forward+retry     │                    │                     │
-   │                       │ ─────────────────► │  map tool→REST     │                     │
-   │                       │                    │ ─── HTTP POST ────► │  handle_request     │
-   │                       │                    │   /api/neuron/...   │   → handle_api_*    │
-   │                       │                    │                    │  engram_* builtin   │
-   │                       │                    │                    │ ── (HTTP mode) ───► │  activate/search/
-   │                       │                    │                    │                     │  save
-   │                       │                    │                    │ ◄─── nodes/edges ── │
-   │                       │                    │ ◄── JSON result ── │                     │
-   │                       │                    │  fire_activation    │                     │
-   │                       │                    │  /recall warm-up ─► soul (side effect)    │
-   │ ◄──── result ──────── │ ◄───────────────── │                    │                     │
-```
-
-Responsibilities per hop, and the volatility each isolates (VBD reading):
-
-1. **proxy** — transport resilience. Isolates *client connection volatility*
-   (drops, retries, health) from everything above. No MCP semantics.
-2. **wrapper** — protocol translation. Isolates the *MCP protocol* from the soul:
-   owns `initialize`/`tools/list`/`tools/call`, the ~90-tool catalog, and
-   `dispatch_tool_call`. Also fires the `fire_activation` `/recall` side effect so
-   tool use warms working memory.
-3. **soul** — cognition. `handle_request` dispatch → `handle_api_*` → engram
-   builtins. In HTTP mode it reaches engram over localhost; otherwise embedded.
-4. **engram** — the graph. Spreading activation, Hebbian edges, snapshot
-   persistence.
-
-For the user-facing chat pipeline (not tool calls), `/api/chat` enters
-`layered_cycle` (soul.el) — L1 safety → L2 stewardship → L3 imprint — described
-in `02-components.md §3c`.
-
-## Production: GKE blue/green
-
-Neuron prod runs on GKE cluster **`neuron-platform`** (Autopilot, us-central1),
-namespace **`neuron-prod`**. Two Deployments, `neuron-mcp-blue` and
-`neuron-mcp-green`, share one Service selector that names the *active slot*.
-
-- **Deployments** (`deployment-blue.yaml` / `deployment-green.yaml`): one
-  container `soul`, image pinned by **digest** (not `:latest`) so Argo CD can't
-  drift the active slot to an untested build (see the pin comment in
-  `deployment-blue.yaml`). `strategy: Recreate` — the PVC is RWO so only one pod
-  can hold it at a time. Probes hit `/health` on `:7770`.
-- **Service** (`service.yaml`): ClusterIP `neuron-mcp`, port 7770 → 7770,
-  `selector: {app: neuron-mcp, slot: blue}`. The blue/green script patches
-  `slot`.
-- **Storage** (`pvc.yaml`): `neuron-engram-data`, `standard-rwo` (pd-balanced),
-  10Gi, RWO. Engram data is the single `snapshot.json` (~8MB active).
-- **The swap** (`scripts/blue-green-deploy.sh`): (1) set image on the target
-  slot; (2) scale target to 1, wait for rollout; (3) **patch the Service selector
-  to the new slot** (traffic flip); (4) scale the old slot to 0. Imperative
-  `kubectl` for the live swap, then git-update the Argo manifests so a sync
-  doesn't revert replica counts.
-- **Backup** (`backup-cronjob.yaml`): every 15 min, tar `/data` → GCS, keep 96.
-
-### Resource sizing (learned the hard way)
-
-`deployment-blue.yaml` documents the memory history in comments: idle soul RSS
-~860Mi; the `beginSession` call (loads memories + backlog + preferences) spikes
-past 1Gi and OOM-killed the pod mid-request (client socket closed). Current
-setting: `requests = limits = 2Gi`, cpu 250m/1000m. This is *why* the cognitive
-API projects/compacts payloads so aggressively (doc 02 §2, doc 01 axis 1) — the
-memory ceiling is real and close.
-
-## CI/CD
-
-Two Gitea Actions workflows (`.gitea/workflows/`), serialized on a single GCE
-runner (`concurrency: neuron-runner`).
-
-- **`ci.yaml`** (push/PR to `main`):
-  - **build:** free disk → checkout → install gcc/libcurl/gcloud → download
-    `el-runtime-c`/`el-runtime-h` from Artifact Registry `foundation-prod`
-    (`elc`/`elb` intentionally **not** downloaded) → compile the committed
-    `dist/soul.c` directly: `cc -O2 -DHAVE_CURL dist/soul.c el_runtime.c -lssl
-    -lcrypto -lcurl -lpthread -lm -o dist/neuron` → `strip -s` → smoke test
-    `dist/neuron --help` → publish `neuron-soul@<sha8>` to AR (push only).
-  - **deploy** (push-to-main only): auth GCP → `get-credentials neuron-platform`
-    → **determine idle slot** (the deployment at 0 replicas) → prepare artifacts
-    (soul binary + `elc` + runtime for the Docker build) → **clone the engram
-    repo** into `./engram/` (Dockerfile builds engram from source) → `docker
-    build`+push `neuron-soul:<sha>` → `scripts/blue-green-deploy.sh --image
-    --slot` → git-push updated infra manifests → `kubectl rollout status` →
-    verify `neuron-mcp` endpoints.
-- **`deploy-gke.yaml`** (`workflow_dispatch` only, slot default `green`) — manual
-  rollback / forced-slot deploy without a rebuild; same auth → slot → docker →
-  blue-green → manifest-sync → verify steps.
-
-The Docker image (`Dockerfile`) is a two-stage build: stage 1 compiles
-`engram/src/server.el` → `engram.c` → `engram` binary via `elc` + `cc`; stage 2
-is an Ubuntu 24.04 runtime (GLIBC 2.39 satisfies both binaries) with `soul` +
-`engram` + `entrypoint.sh`.
-
-## Config & secrets (high level)
-
-Runtime configuration is injected as environment, sourced from a Kubernetes
-Secret `neuron-soul-secrets` via ExternalSecret (ESO → GCP Secret Manager,
-Workload Identity — no key files). From `deployment-blue.yaml`:
-
-| Env | Meaning |
-|---|---|
-| `NEURON_PORT` | soul HTTP port (7770) |
-| `NEURON_LLM_0_URL` / `_KEY` / `_FORMAT` | primary LLM endpoint (Anthropic format) |
-| `SOUL_CGI_ID` / `SOUL_IDENTITY` | CGI id + identity seed (→ `seed_persona_from_env`, `soul.el:250`) |
-| `NEURON_TOKEN` | auth token *(present in env; note the HTTP dispatch does not currently check it — doc 01 Divergence 3)* |
-| `NEURON_API_URL` | self-callback URL (`http://neuron-mcp.neuron-prod.svc.cluster.local:7770`) |
-| `ENGRAM_URL` / `ENGRAM_DATA_DIR` | `http://localhost:8742` / `/data` |
-
-There is also an in-graph config surface: `ConfigEntry` nodes read/written by
-`inspect_config` / `tune_config` (`neuron-api.el:616-653`) — runtime-tunable
-persona/behavior keys stored *in* the engram rather than the environment.
-
-> **Operational note to flag.** The `deployment-blue.yaml` image pin comment
-> (dated Jul 2026) records that `:latest` resolved to an untested build lacking a
-> `mem_save`/genesis-SIGSEGV fix, which is why the active slot is pinned to a
-> digest. Any promotion must (a) rebuild a good soul and (b) update the digest in
-> git so Argo CD and `blue-green-deploy.sh` agree. *(state as-of the manifests
-> read; verify current slot before deploying.)*

docs/architecture/05-el-and-build.md

@@ -1,165 +0,0 @@
-# Neuron — El & the Build Pipeline
-
-> The soul and the engram are written in **El**, a self-hosted language that
-> compiles to C11. This document covers the language layer, the
-> amalgamation → `soul.c` → binary pipeline, how the soul is composed from its
-> layers, and the compile-time capability gates. Sources: `manifest.el`,
-> `soul.el`, `dist/soul.c`, the El toolchain under `foundation/el/`
-> (`elc.c`, `elb.el`, `BOOTSTRAP.md`), and `.gitea/workflows/`.
-
-## The El language layer
-
-El is a compiled, Lisp-family language transpiled to C11. Every El program links
-a shared runtime, `el_runtime.c` / `el_runtime.h`, which implements **all
-builtins**: the engram graph engine (`engram_*`), HTTP (`http_*`), JSON
-(`json_*`), crypto, time, LLM calls, and DHARMA primitives (`el_runtime.h`,
-`BOOTSTRAP.md:599-644`). The runtime also provides an arena allocator (server
-mode) and ARC refcounting. Practically: **the runtime is both the standard
-library and the database** — the graph physically lives in `el_runtime.c`, and El
-source files are the orchestration/logic on top.
-
-A recurring texture in the source is workaround comments for codegen quirks
-(e.g. broken `%`/`*` operators). These are El-compiler maturity issues, not
-architecture — but they explain some of the hand-rolled arithmetic in
-`awareness.el`/`memory.el`.
-
-## The toolchain: `elc`, `elb`, `el_runtime`
-
-| Tool | What it is | Role |
-|---|---|---|
-| `elc` | the El compiler, **self-hosted** (written in El) | compiles one El translation unit → C11. Import resolution is textual, depth-first, dedup'd — it inlines all imports into one string and emits forward decls for every fn (`BOOTSTRAP.md:927-936`). |
-| `elb` | the build coordinator (`elb.el`, ~367 lines) | reads `manifest.el`, walks the import graph, does **incremental** separate compilation using `.elh` header files (`extern fn` decls), links the final binary (".NET-style incremental build", `BOOTSTRAP.md:886, 916-925`). |
-| `el_runtime.c/.h` | the C runtime | linked by every compiled El binary; implements all builtins and the graph engine. |
-
-The `.elh` files present in this repo (`soul.elh`, `memory.elh`,
-`neuron-api.elh`, `routes.elh`, …) are **auto-generated headers** (`elc
---emit-header`) — the `extern fn` interface each module exports. They are the
-contract surface `elb` uses for incremental builds, and they double as a concise
-map of each module's public functions.
-
-### Self-hosting fixed point
-
-`elc` is bootstrapped from a seed binary (`dist/platform/elc`, Mach-O arm64) and
-verified by a **fixed-point self-recompile**: the compiler must compile its own
-source to a byte-identical binary (`BOOTSTRAP.md:7-58, 801-816`). Pipeline:
-`elc-cli.el → compiler.el → lexer/parser/codegen.el`.
-
-## Building the soul: `.el → elc → .c → cc → binary`
-
-The concrete pipeline (mirrored in the engram build, `engram/src/server.el:8-11`):
-
-```
-   soul.el (+ imports)
-        │  elc  (self-hosted El→C11, inlines imports)
-        ▼
-   dist/soul.c   (~31,300 lines — single amalgamated translation unit)
-        │  cc -std=c11 -O2  soul.c  el_runtime.c
-        ▼
-   dist/neuron   (native binary)
-```
-
-### Why `dist/soul.c` is committed
-
-`dist/soul.c` is the authoritative combined translation unit, **regenerated on
-macOS by running `elb`**. It is checked into the repo on purpose: CI compiles it
-**directly** and skips `elb` entirely (`ci.yaml`). The reason is operational, not
-aesthetic —
-
-- `elb` succeeds on arm64/macOS `ld`, but **fails on Linux** (duplicate strong
-  symbols), and
-- `elc` uses 24GB+ virtual memory, which **OOM-kills the 16GB CI runner**.
-
-So the pattern is: **compile on the Mac, commit the amalgamation, and let Linux
-CI do only the cheap `cc` step.** `dist/` also holds the per-module `.c` outputs
-(`memory.c`, `awareness.c`, `chat.c`, the NLG morphology tables, …) —
-intermediate artifacts of the same process.
-
-> **Mechanism note (observed during the self-load regen).** The single-TU
-> `dist/soul.c` is produced by running `elc` over the **flattened import set** —
-> every module source in `soul.el`'s transitive import graph, concatenated with
-> `import` lines stripped, compiled in one pass (`elc` hoists forward decls for
-> all functions, so concat order doesn't affect correctness). `elb` on its own
-> emits **per-module `.c` + a linked binary**, not the combined `soul.c`; it is
-> the separate-compilation coordinator, and `elc soul.el` alone yields only the
-> soul module. Because the amalgamation is regenerated only on demand, it can lag
-> the `.el` sources: this PR regenerated it after it had fallen behind several
-> source commits, and folded in the `inspect_graph` relevance-ranked projection
-> (the `compact=1` self-load fix, doc 02) so CI ships it.
-
-## How the soul is composed (layer stack)
-
-`manifest.el` declares the build:
-
-```
-package "neuron" { version "0.1.0"  edition "2026" }
-build { entry "soul.el" }
-```
-
-The comment in `manifest.el:8-16` documents the intended **layer composition
-order**: a base layer `../foundation/nlg` (the NLG engine — 31-language
-morphology, grammar, realizer, semantics) with the **soul layer** (`soul.el`)
-injected on top. New layers are added by importing them in `soul.el` before the
-soul's own code. *(The `../foundation/nlg` path is the manifest's stated NLG base;
-the NLG sources compile into the `dist/*.c` morphology/grammar tables seen in the
-tree.)*
-
-`soul.el` itself imports, in order (`soul.el:1-10`): `elp.el`, `memory.el`,
-`safety.el`, `stewardship.el`, `imprint.el`, `awareness.el`, `chat.el`,
-`studio.el`, `elp-input.el`, `routes.el` — then declares the `cgi "neuron-soul"`
-identity block (`:12-17`): `dharma_id`, `principal`, `network`, and
-`engram: http://localhost:8742`. Because `elc` inlines imports depth-first, this
-import list *is* the amalgamation order that produces `dist/soul.c`.
-
-The `cgi` block is not just metadata — it sets the program's **capability tier**
-(next section).
-
-## Compile-time capability gates
-
-El's codegen classifies each program by its top-level declaration and **enforces
-capabilities at compile time** (`BOOTSTRAP.md:958-965`):
-
-| Declaration | Tier | Allowed |
-|---|---|---|
-| `cgi { … }` | full | everything — `llm_call_agentic`, `llm_register_tool`, `dharma_emit`, `dharma_field`, LLM, DHARMA |
-| `service { … }` | restricted | no `llm_call_agentic` / `llm_register_tool` / `dharma_emit` / `dharma_field` |
-| neither | utility | no DHARMA, no LLM |
-
-A program that calls a capability its tier forbids **fails to compile**: codegen
-emits a C `#error` naming the forbidding call, so the downstream `cc` aborts.
-This is the **primary hard gate** in the build — capability escalation is caught
-by the compiler, not at runtime. The soul is a `cgi`, so it gets the full tier;
-`engram` is declared without `cgi`/`service` semantics that would grant LLM
-access (it is a store).
-
-## Verification gates
-
-| Gate | Where | What it checks |
-|---|---|---|
-| Capability tier | El codegen (`BOOTSTRAP.md:958`) | no capability escalation; hard `#error` at compile |
-| Self-hosting fixed point | `elc` bootstrap (`BOOTSTRAP.md:801`) | compiler reproduces itself byte-identically |
-| `test_soul_guard.el` | `tests/` | the genesis `safe_to_seed` boot guard — a sparse/oversized snapshot must not clobber the graph |
-| `test_layer_contract.el` | `tests/` | JSON interface shapes between composition-stack layers that `layered_cycle` depends on (e.g. `safety_screen` always returns an `action` field) |
-| other `tests/*.el` | `tests/` | `test_sessions.el`, `test_safety.el`, `test_bell_safety.el`, `test_layered_cycle.el`, `test_imprint.el`, `test_stewardship.el`, `test_api_define_process.el`, … |
-| CI smoke test | `ci.yaml` | `dist/neuron --help` runs |
-
-> **Flag (unverified/TODO).** CI (`ci.yaml`) runs only the `cc` compile + the
-> `dist/neuron --help` smoke test — it does **not** invoke the `tests/*.el`
-> soul-guard / layer-contract suites, and `.githooks/` is empty. Whether these
-> tests are gated anywhere (a pre-merge hook, a separate workflow, or manual
-> discipline on the Mac before regenerating `soul.c`) is **not evident in the
-> files read**. This is the most important build-integrity gap to confirm with a
-> human: the contract tests exist but their enforcement point is unproven.
-
-## Practical consequences for a contributor
-
-- **You cannot rebuild the whole soul on Linux/CI.** Regenerate `dist/soul.c` on
-  a Mac (`elb`), commit it, then CI compiles it. Changing an `.el` file without
-  regenerating `soul.c` ships nothing.
-- **The `.elh` files are your API map.** To see what a module exposes, read its
-  `.elh` — it's the generated `extern fn` list.
-- **Memory/activation behavior often can't be changed from this repo.** The
-  volatile numeric core is in `foundation/el` `el_runtime.c`. Doc 01, Divergence
-  6 explains why this is the sharpest edge in the architecture.
-- **The engram is a separate repo.** It is cloned and compiled by CI
-  (`Dockerfile`, `.gitea/workflows/`), not vendored here. Its source of truth is
-  `foundation/el/engram`.

mcp-wrapper/src/main.el

@@ -77,327 +77,111 @@ fn tool(name: String, desc: String) -> String {
     return "{\"name\":\"" + name + "\",\"description\":\"" + desc + "\",\"inputSchema\":{\"type\":\"object\",\"properties\":{}}}"
 }
 
-// tool_s — tool entry with an EXPLICIT JSON-Schema for its inputs. Used for tools
-// whose arguments must actually bite: unless the bounding/targeting params are
-// advertised, the MCP client sends nothing and the soul returns the FULL
-// neighborhood (480-775KB, over transport limits). Declaring the schema is what
-// makes a targeted call (entity_id/depth/compact/query/limit) reach the soul.
-fn tool_s(name: String, desc: String, schema: String) -> String {
-    return "{\"name\":\"" + name + "\",\"description\":\"" + desc + "\",\"inputSchema\":" + schema + "}"
-}
-
-// prop — a single JSON-Schema property fragment. Descriptions are plain text
-// (no quotes/newlines) so no escaping is needed here.
-fn prop(name: String, ty: String, desc: String) -> String {
-    return "\"" + name + "\":{\"type\":\"" + ty + "\",\"description\":\"" + desc + "\"}"
-}
-
-// obj_schema — wrap a comma-joined list of prop() fragments as an object schema.
-fn obj_schema(props: String) -> String {
-    return "{\"type\":\"object\",\"properties\":{" + props + "}}"
-}
-
-// ── Per-tool input schemas ──────────────────────────────────────────────────
-// Each mirrors the params the soul's /api/neuron/* handler actually honors so
-// declared == forwarded == honored (no accepted-but-ignored args).
-
-fn schema_inspect_graph() -> String {
-    return obj_schema(
-        prop("entity_id", "string", "UUID of the node to inspect (e.g. kn-... / mem-... / gn-...). Optional if name is given.") +
-        "," + prop("name", "string", "Named traversal root instead of entity_id: self, neuron, values, values_hub.") +
-        "," + prop("entity_type", "string", "Optional node-type hint (knowledge, memory, ...) for disambiguation.") +
-        "," + prop("depth", "integer", "Neighborhood hop radius. Default 1.") +
-        "," + prop("compact", "integer", "1 (default) returns a relevance-ranked bounded projection (top-K neighbors with content snippets, the rest as lightweight pointers). Set 0 to get the full, unbounded neighborhood.") +
-        "," + prop("snip", "integer", "Max content chars per node in compact mode. Default 600.") +
-        "," + prop("k", "integer", "How many top neighbors carry full content in compact mode. Default 12.")
-    )
-}
-
-fn schema_traverse_graph() -> String {
-    return obj_schema(
-        prop("entity_id", "string", "UUID of the node to start the walk from (alias: start_id). Required.") +
-        "," + prop("depth", "integer", "How many hops to walk. Default 2.") +
-        "," + prop("compact", "integer", "1 (default) returns a bounded, relevance-ranked projection; 0 returns the full neighborhood.") +
-        "," + prop("snip", "integer", "Max content chars per node in compact mode. Default 600.") +
-        "," + prop("k", "integer", "How many top neighbors carry full content in compact mode. Default 12.")
-    )
-}
-
-fn schema_retrieve_knowledge() -> String {
-    return obj_schema(
-        prop("id", "string", "UUID of the knowledge node to fetch (alias: entity_id / node_id).") +
-        "," + prop("key", "string", "Stable knowledge key/path to fetch instead of id.") +
-        "," + prop("depth", "integer", "Hop radius around the node. Default 0 (the node plus its immediate 1-hop context).") +
-        "," + prop("snip", "integer", "Max content chars per node in the bounded projection. Default 600.") +
-        "," + prop("k", "integer", "How many top neighbors carry full content. Default 12.")
-    )
-}
-
-fn schema_search_query(limit_desc: String) -> String {
-    return obj_schema(
-        prop("query", "string", "Search text. Spread-activates the engram and returns the most relevant nodes.") +
-        "," + prop("limit", "integer", limit_desc)
-    )
-}
-
-fn schema_recall() -> String {
-    return obj_schema(
-        prop("query", "string", "Search text to recall by relevance.") +
-        "," + prop("chain_name", "string", "Named memory chain to walk instead of a free-text query.") +
-        "," + prop("limit", "integer", "Max results. Default 10.")
-    )
-}
-
-// ── Reusable write/lookup schemas ───────────────────────────────────────────
-// Each declares exactly the params the corresponding wrapper handler reads and
-// forwards to the soul, so declared == forwarded == honored (no accepted-but-
-// ignored args, and no arg the handler silently drops).
-
-fn sc_id(desc: String) -> String {
-    return obj_schema(prop("id", "string", desc))
-}
-
-fn sc_id_content() -> String {
-    return obj_schema(
-        prop("id", "string", "UUID of the prior node being superseded/updated.") +
-        "," + prop("content", "string", "New content for the updated node.")
-    )
-}
-
-fn sc_edge(rel_desc: String) -> String {
-    return obj_schema(
-        prop("from_id", "string", "UUID of the source node (edge tail). Required.") +
-        "," + prop("to_id", "string", "UUID of the target node (edge head). Required.") +
-        "," + prop("relation", "string", rel_desc)
-    )
-}
-
-fn sc_limit(desc: String) -> String {
-    return obj_schema(prop("limit", "integer", desc))
-}
-
-fn sc_memory() -> String {
-    return obj_schema(
-        prop("content", "string", "The memory text. Required.") +
-        "," + prop("importance", "string", "low | normal | high | critical. Drives salience.") +
-        "," + prop("tags", "string", "Comma-separated or JSON-array tags.") +
-        "," + prop("project", "string", "Project this memory belongs to.") +
-        "," + prop("supersedes_id", "string", "UUID of a prior memory this one replaces (wires a supersedes edge).")
-    )
-}
-
-fn sc_content_title(content_desc: String) -> String {
-    return obj_schema(
-        prop("content", "string", content_desc) +
-        "," + prop("title", "string", "Short title/label for the node.")
-    )
-}
-
-fn sc_content(content_desc: String) -> String {
-    return obj_schema(
-        prop("content", "string", content_desc) +
-        "," + prop("title", "string", "Optional short title/label.") +
-        "," + prop("description", "string", "Optional longer description (used as content if content is empty).")
-    )
-}
-
-fn sc_backlog() -> String {
-    return obj_schema(
-        prop("title", "string", "Work-item title. Required.") +
-        "," + prop("content", "string", "Body/details of the item (alias: description).") +
-        "," + prop("description", "string", "Body/details of the item.") +
-        "," + prop("project", "string", "Project tag.") +
-        "," + prop("priority", "string", "P0 | P1 | P2 | P3.")
-    )
-}
-
-fn sc_track_work() -> String {
-    return obj_schema(
-        prop("item_id", "string", "UUID of the backlog item to update.") +
-        "," + prop("summary", "string", "What changed / outcome (stored as the update content).") +
-        "," + prop("action", "string", "start | complete | block.")
-    )
-}
-
-fn sc_capture_knowledge() -> String {
-    return obj_schema(
-        prop("content", "string", "Knowledge body. Required.") +
-        "," + prop("title", "string", "Knowledge title/key.")
-    )
-}
-
-fn sc_promote_knowledge() -> String {
-    return obj_schema(
-        prop("id", "string", "UUID of the prior knowledge node to promote. Required.") +
-        "," + prop("content", "string", "Updated canonical content. Required.") +
-        "," + prop("tags", "string", "Tags for the promoted node.")
-    )
-}
-
-fn sc_config_key() -> String {
-    return obj_schema(prop("key", "string", "Config key to read (e.g. neuron.self.traversal_root)."))
-}
-
-fn sc_config_tune() -> String {
-    return obj_schema(
-        prop("key", "string", "Config key to set. Required.") +
-        "," + prop("value", "string", "Value to set. Required.")
-    )
-}
-
-fn sc_consolidate() -> String {
-    return obj_schema(
-        prop("action", "string", "Consolidation action (e.g. session, reload).") +
-        "," + prop("summary", "string", "Session/work summary to persist.")
-    )
-}
-
-fn sc_browse_processes() -> String {
-    return obj_schema(prop("name", "string", "Process name to fetch; omit to list all."))
-}
-
-fn sc_notification() -> String {
-    return obj_schema(prop("content", "string", "Notification text. Required."))
-}
-
-fn sc_pin() -> String {
-    return obj_schema(prop("id", "string", "UUID of the node to strengthen/pin (alias: node_id)."))
-}
-
-fn sc_state_event() -> String {
-    return obj_schema(
-        prop("content", "string", "Description of the internal-state event.") +
-        "," + prop("kind", "string", "Event kind (frustration, uncertainty, insight, ...).") +
-        "," + prop("intensity", "string", "Optional intensity 0..1.")
-    )
-}
-
-fn sc_forget() -> String {
-    return obj_schema(
-        prop("node_id", "string", "UUID of the node to tombstone. Required. The node and its edges are kept and recoverable; blocked for protected identity nodes.")
-    )
-}
-
-fn sc_process() -> String {
-    return obj_schema(
-        prop("name", "string", "Process name. Required.") +
-        "," + prop("description", "string", "What the process does.") +
-        "," + prop("steps", "string", "Ordered steps (JSON array or text).")
-    )
-}
-
-fn sc_list_state_events() -> String {
-    return obj_schema(
-        prop("limit", "integer", "Max events. Default 20.") +
-        "," + prop("query", "string", "Optional filter text.")
-    )
-}
-
 fn tools_catalog() -> String {
     return "[" +
 // ── Session + orchestration ─────────────────────────────────────────────────
 tool("beginSession", "Initialize session: surface recent high-importance memories, project list, and preferences.") +
 "," + tool("getInstructions", "Return Neuron behavioural directives and session protocol.") +
 "," + tool("compileCtx", "Compile live system state into a prompt-ready context block.") +
-"," + tool_s("compileStep", "Run one orchestration step (orchestrate / execute / learn / build / refine).", sc_memory()) +
-"," + tool_s("consolidate", "Wrap up: persist graph snapshot and summarise the session.", sc_consolidate()) +
-"," + tool_s("projectContext", "Return all entities tagged with the given project.", schema_search_query("Max results. Default 50.")) +
+"," + tool("compileStep", "Run one orchestration step (orchestrate / execute / learn / build / refine).") +
+"," + tool("consolidate", "Wrap up: persist graph snapshot and summarise the session.") +
+"," + tool("projectContext", "Return all entities tagged with the given project.") +
 // ── Memory ──────────────────────────────────────────────────────────────────
-"," + tool_s("remember", "Store a memory node with content, importance, and tags.", sc_memory()) +
-"," + tool_s("recall", "Retrieve memories by chain or query.", schema_recall()) +
-"," + tool_s("inspectMemories", "List recent memory nodes.", sc_limit("Max memories. Default 50.")) +
-"," + tool_s("evolveMemory", "Update an existing memory node, optionally superseding another.", sc_id_content()) +
-"," + tool_s("forget", "Tombstone a specific node by id (keeps it and its edges, recoverable); does not hard-delete.", sc_forget()) +
-"," + tool_s("pinNode", "Strengthen a node so it stays salient.", sc_pin()) +
+"," + tool("remember", "Store a memory node with content, importance, and tags.") +
+"," + tool("recall", "Retrieve memories by chain or query.") +
+"," + tool("inspectMemories", "List recent memory nodes.") +
+"," + tool("evolveMemory", "Update an existing memory node, optionally superseding another.") +
+"," + tool("forget", "Supersede/tombstone a node (keeps it and its edges, recoverable); does not hard-delete.") +
+"," + tool("pinNode", "Strengthen a node so it stays salient.") +
 // ── Knowledge ───────────────────────────────────────────────────────────────
-"," + tool_s("searchKnowledge", "Search knowledge base by semantic similarity.", schema_search_query("Max results. Default 10.")) +
-"," + tool_s("retrieveKnowledge", "Fetch a knowledge node by id or key (bounded, relevance-ranked projection).", schema_retrieve_knowledge()) +
-"," + tool_s("browseKnowledge", "List knowledge nodes by category.", sc_limit("Max knowledge nodes. Default 100.")) +
-"," + tool_s("captureKnowledge", "Persist a durable knowledge node.", sc_capture_knowledge()) +
-"," + tool_s("evolveKnowledge", "Update a knowledge node.", sc_id_content()) +
-"," + tool_s("promoteKnowledge", "Atomically promote a knowledge node: create updated canonical version and wire supersedes edge to predecessor in one call.", sc_promote_knowledge()) +
-"," + tool_s("removeKnowledge", "Delete a knowledge node.", sc_id("UUID of the knowledge node to delete.")) +
+"," + tool("searchKnowledge", "Search knowledge base by semantic similarity.") +
+"," + tool("retrieveKnowledge", "Fetch a knowledge node by id or key.") +
+"," + tool("browseKnowledge", "List knowledge nodes by category.") +
+"," + tool("captureKnowledge", "Persist a durable knowledge node.") +
+"," + tool("evolveKnowledge", "Update a knowledge node.") +
+"," + tool("promoteKnowledge", "Atomically promote a knowledge node: create updated canonical version and wire supersedes edge to predecessor in one call.") +
+"," + tool("removeKnowledge", "Delete a knowledge node.") +
 // ── Entities + graph ────────────────────────────────────────────────────────
-"," + tool_s("searchEntities", "Find entities (memories, knowledge, work items) by query.", schema_search_query("Max results. Default 20.")) +
-"," + tool_s("inspectGraph", "Read-only graph inspection - returns a bounded, relevance-ranked neighborhood of an entity. Accepts entity_id (UUID) or name (self, neuron, values). Use depth/compact/snip/k to bound the result.", schema_inspect_graph()) +
-"," + tool_s("traverseGraph", "Walk the graph from a starting node (bounded by default).", schema_traverse_graph()) +
-"," + tool_s("searchGraph", "Search graph nodes by content.", schema_search_query("Max results. Default 30.")) +
-"," + tool_s("linkEntities", "Create an edge between two entities.", sc_edge("Edge relation. Default associates.")) +
-"," + tool_s("linkCausal", "Create a causal edge (cause -> effect).", sc_edge("Edge relation. Default causes.")) +
-"," + tool_s("restructureCausalGraph", "Re-balance the causal subgraph after new evidence.", sc_consolidate()) +
+"," + tool("searchEntities", "Find entities (memories, knowledge, work items) by query.") +
+"," + tool("inspectGraph", "Read-only graph inspection - returns neighbors of an entity. Accepts entity_id (UUID) or name (self, neuron, values).") +
+"," + tool("traverseGraph", "Walk the graph from a starting node.") +
+"," + tool("searchGraph", "Search graph nodes by content + relation filter.") +
+"," + tool("linkEntities", "Create an edge between two entities.") +
+"," + tool("linkCausal", "Create a causal edge (cause -> effect).") +
+"," + tool("restructureCausalGraph", "Re-balance the causal subgraph after new evidence.") +
 "," + tool("rebuildGraph", "Rebuild graph indices from the on-disk snapshot.") +
-"," + tool("runStructuralAudit", "Audit graph structure for orphans, dangling edges, mislabeled types.") +
+"," + tool("runStructuralAudit", "Stage 1 structural audit: owner-vs-runtime divergence, orphans and dangling edges, typed-edge distribution, self-model connectivity. Returns an annotated characterization, not a score.") +
 // ── Backlog + work ──────────────────────────────────────────────────────────
-"," + tool_s("planWork", "Create a backlog item.", sc_backlog()) +
-"," + tool_s("reviewBacklog", "Browse work items.", sc_limit("Max items. Default 50.")) +
-"," + tool_s("trackWork", "Update status of a backlog item.", sc_track_work()) +
-"," + tool_s("listWork", "List active execution contexts.", sc_limit("Max contexts. Default 50.")) +
-"," + tool_s("beginWork", "Open an execution context for a multi-step task.", sc_content("What you're doing (description of the work).")) +
-"," + tool_s("progressWork", "Record progress on an execution context.", sc_content("Step name / progress note.")) +
-"," + tool_s("checkWork", "Verify outcomes / blockers on an execution context.", sc_id("UUID of the execution context (alias: context_id).")) +
+"," + tool("planWork", "Create a backlog item.") +
+"," + tool("reviewBacklog", "Browse work items.") +
+"," + tool("trackWork", "Update status of a backlog item.") +
+"," + tool("listWork", "List active execution contexts.") +
+"," + tool("beginWork", "Open an execution context for a multi-step task.") +
+"," + tool("progressWork", "Record progress on an execution context.") +
+"," + tool("checkWork", "Verify outcomes / blockers on an execution context.") +
 // ── Artifacts ───────────────────────────────────────────────────────────────
-"," + tool_s("draftArtifact", "Create a versioned artifact (plan, spec, report).", sc_content_title("Artifact body / markdown. Required.")) +
-"," + tool_s("findArtifacts", "Find artifacts by project or query.", schema_search_query("Max results. Default 20.")) +
-"," + tool_s("retrieveArtifact", "Fetch a specific artifact by id.", sc_id("UUID of the artifact.")) +
-"," + tool_s("reviseArtifact", "Update an artifact's content.", sc_id_content()) +
-"," + tool_s("manageArtifact", "Change artifact status (draft / review / approved / archived).", sc_id_content()) +
+"," + tool("draftArtifact", "Create a versioned artifact (plan, spec, report).") +
+"," + tool("findArtifacts", "Find artifacts by project or query.") +
+"," + tool("retrieveArtifact", "Fetch a specific artifact by id.") +
+"," + tool("reviseArtifact", "Update an artifact's content.") +
+"," + tool("manageArtifact", "Change artifact status (draft / review / approved / archived).") +
 // ── Processes ───────────────────────────────────────────────────────────────
-"," + tool_s("defineProcess", "Register a proven workflow as a process.", sc_process()) +
-"," + tool_s("listProcesses", "List registered processes.", sc_limit("Max processes. Default 50.")) +
-"," + tool_s("browseProcesses", "Browse processes by name or step.", sc_browse_processes()) +
-"," + tool_s("retrieveProcess", "Fetch a specific process by name.", sc_id("Process id or name.")) +
-"," + tool_s("executeProcess", "Mark a process as executed (records the application).", sc_content("Process execution note.")) +
-"," + tool_s("exportProcess", "Export a process definition.", sc_id("Process id or name.")) +
-"," + tool_s("deleteProcess", "Remove a process.", sc_id("Process id or name.")) +
+"," + tool("defineProcess", "Register a proven workflow as a process.") +
+"," + tool("listProcesses", "List registered processes.") +
+"," + tool("browseProcesses", "Browse processes by name or step.") +
+"," + tool("retrieveProcess", "Fetch a specific process by name.") +
+"," + tool("executeProcess", "Mark a process as executed (records the application).") +
+"," + tool("exportProcess", "Export a process definition.") +
+"," + tool("deleteProcess", "Remove a process.") +
 // ── Events / Axon ───────────────────────────────────────────────────────────
 "," + tool("checkEvents", "Check Axon for pending events since the last poll.") +
-"," + tool_s("inspectEvent", "Fetch full detail for a single event.", sc_id("Event id.")) +
-"," + tool_s("acknowledgeEvent", "Mark an event as handled.", sc_id("Event id.")) +
+"," + tool("inspectEvent", "Fetch full detail for a single event.") +
+"," + tool("acknowledgeEvent", "Mark an event as handled.") +
 "," + tool("processEvents", "Drain and act on the event queue.") +
-"," + tool_s("sendNotification", "Emit a notification to Axon / external sinks.", sc_notification()) +
+"," + tool("sendNotification", "Emit a notification to Axon / external sinks.") +
 // ── Config ──────────────────────────────────────────────────────────────────
-"," + tool_s("inspectConfig", "Inspect Neuron config keys.", sc_config_key()) +
-"," + tool_s("tuneConfig", "Set a Neuron config key.", sc_config_tune()) +
+"," + tool("inspectConfig", "Inspect Neuron config keys.") +
+"," + tool("tuneConfig", "Set a Neuron config key.") +
 // ── Imprints ────────────────────────────────────────────────────────────────
-"," + tool_s("createImprint", "Cultivate a new imprint.", sc_content_title("Imprint seed / description.")) +
-"," + tool_s("listImprints", "List imprints.", sc_limit("Max imprints. Default 50.")) +
-"," + tool_s("retrieveImprint", "Fetch an imprint by id.", sc_id("UUID of the imprint.")) +
-"," + tool_s("evolveImprint", "Update an imprint.", sc_id_content()) +
-"," + tool_s("deleteImprint", "Remove an imprint.", sc_id("UUID of the imprint.")) +
+"," + tool("createImprint", "Cultivate a new imprint.") +
+"," + tool("listImprints", "List imprints.") +
+"," + tool("retrieveImprint", "Fetch an imprint by id.") +
+"," + tool("evolveImprint", "Update an imprint.") +
+"," + tool("deleteImprint", "Remove an imprint.") +
 // ── Self / cultivation ──────────────────────────────────────────────────────
 "," + tool("getSelfModel", "Return the current self-model.") +
-"," + tool_s("updateSelfModel", "Update the self-model.", sc_content("Self-model update text.")) +
+"," + tool("updateSelfModel", "Update the self-model.") +
 "," + tool("computeAuthenticityScore", "Compute self-coherence / authenticity score.") +
 "," + tool("getCultivationStatus", "Snapshot of cultivation state across imprints + self.") +
 // ── Probing / wonder / internal state ──────────────────────────────────────
-"," + tool_s("getProbeTemplates", "List available probe templates.", schema_search_query("Max templates. Default 50.")) +
-"," + tool_s("recordProbeResponse", "Record an answer to a probe.", sc_content("Probe response text.")) +
-"," + tool_s("completeProbingStage", "Mark a probing stage complete.", sc_content("Stage completion note.")) +
-"," + tool_s("addWonderQuestion", "Push a question onto the wonder queue.", sc_content("The wonder question.")) +
-"," + tool_s("getWonderManifest", "List active wonder questions.", sc_limit("Max questions. Default 50.")) +
-"," + tool_s("updateWonderPullWeight", "Re-weight a wonder question.", sc_id_content()) +
-"," + tool_s("dischargeWonder", "Resolve / discharge a wonder question.", sc_id("UUID of the wonder question.")) +
-"," + tool_s("logInternalStateEvent", "Log an internal-state event (frustration, uncertainty, etc.).", sc_state_event()) +
-"," + tool_s("listInternalStateEvents", "List internal-state events.", sc_list_state_events()) +
-"," + tool_s("getInternalStateEvent", "Fetch one internal-state event.", sc_id("Internal-state event id.")) +
+"," + tool("getProbeTemplates", "List available probe templates.") +
+"," + tool("recordProbeResponse", "Record an answer to a probe.") +
+"," + tool("completeProbingStage", "Mark a probing stage complete.") +
+"," + tool("addWonderQuestion", "Push a question onto the wonder queue.") +
+"," + tool("getWonderManifest", "List active wonder questions.") +
+"," + tool("updateWonderPullWeight", "Re-weight a wonder question.") +
+"," + tool("dischargeWonder", "Resolve / discharge a wonder question.") +
+"," + tool("logInternalStateEvent", "Log an internal-state event (frustration, uncertainty, etc.).") +
+"," + tool("listInternalStateEvents", "List internal-state events.") +
+"," + tool("getInternalStateEvent", "Fetch one internal-state event.") +
 // ── Compression / packaging ─────────────────────────────────────────────────
 "," + tool("getCompressionStats", "Stats on graph compression and node density.") +
-"," + tool_s("decompilePackage", "Decompile a knowledge package.", sc_id("Package id.")) +
-"," + tool_s("renderPackage", "Render a knowledge package to text.", sc_id("Package id.")) +
-"," + tool_s("catalogRoutes", "List registered routes.", sc_limit("Max routes. Default 50.")) +
-"," + tool_s("registerRoute", "Register a new route.", sc_content("Route definition / description.")) +
+"," + tool("decompilePackage", "Decompile a knowledge package.") +
+"," + tool("renderPackage", "Render a knowledge package to text.") +
+"," + tool("catalogRoutes", "List registered routes.") +
+"," + tool("registerRoute", "Register a new route.") +
 // ── Evaluation ──────────────────────────────────────────────────────────────
-"," + tool_s("beginEvaluation", "Start an evaluation run.", sc_content_title("Evaluation description.")) +
-"," + tool_s("getEvaluation", "Fetch an evaluation by id.", sc_id("Evaluation id.")) +
-"," + tool_s("listEvaluations", "List evaluations.", sc_limit("Max evaluations. Default 50.")) +
+"," + tool("beginEvaluation", "Start an evaluation run.") +
+"," + tool("getEvaluation", "Fetch an evaluation by id.") +
+"," + tool("listEvaluations", "List evaluations.") +
 // ── Capture authorisation ──────────────────────────────────────────────────
-"," + tool_s("authorizeCapture", "Authorise a memory/knowledge capture event.", sc_content("Capture authorisation details.")) +
-"," + tool_s("getCaptureAuthorization", "Fetch a capture authorisation.", sc_id("Capture authorisation id.")) +
-"," + tool_s("recordObservation", "Record an observation.", sc_content("Observation text.")) +
-"," + tool_s("recordIndependentApplication", "Record an independent application of a pattern.", sc_content("What was independently applied.")) +
-"," + tool_s("commitPrediction", "Commit a falsifiable prediction.", sc_content("The prediction (falsifiable).")) +
+"," + tool("authorizeCapture", "Authorise a memory/knowledge capture event.") +
+"," + tool("getCaptureAuthorization", "Fetch a capture authorisation.") +
+"," + tool("recordObservation", "Record an observation.") +
+"," + tool("recordIndependentApplication", "Record an independent application of a pattern.") +
+"," + tool("commitPrediction", "Commit a falsifiable prediction.") +
 // ── Human guidance ──────────────────────────────────────────────────────────
-"," + tool_s("submitHumanGuidanceReview", "Submit a human-guidance review.", sc_content("Review content.")) +
+"," + tool("submitHumanGuidanceReview", "Submit a human-guidance review.") +
 "]"
 }
 
@@ -513,42 +297,12 @@ fn search_with_query(args: String, default_limit: Int) -> String {
     return mcp_json_result(resp)
 }
 
-// compact_flag — resolve the compact bounding flag. Defaults to "1" (ON) so
-// neighborhoods stay bounded. Reads the RAW JSON token (not json_get_string) so
-// an integer 0, a boolean false, or a string "0"/"false" all opt out correctly —
-// json_get_string only sees string-typed values and would miss an integer 0,
-// silently forcing compact back on.
-fn compact_flag(args: String) -> String {
-    let craw: String = json_get_raw(args, "compact")
-    let off: Bool = str_eq(craw, "0") || str_eq(craw, "false")
-        || str_eq(craw, "\"0\"") || str_eq(craw, "\"false\"")
-    return if off { "0" } else { "1" }
-}
-
-// graph_bound_params — optional &snip=/&k= bounding knobs, forwarded only when the
-// caller supplied them (json_get_int returns 0 when absent, meaning "soul default").
-fn graph_bound_params(args: String) -> String {
-    let snip: Int = json_get_int(args, "snip")
-    let k: Int = json_get_int(args, "k")
-    let snip_p: String = if snip > 0 { "&snip=" + int_to_str(snip) } else { "" }
-    let k_p: String = if k > 0 { "&k=" + int_to_str(k) } else { "" }
-    return snip_p + k_p
-}
-
 fn fetch_by_id(args: String) -> String {
     let id: String = pick_id(args)
     if str_eq(id, "") {
         return mcp_text_result("error: id is required")
     }
-    // NB: the soul's engram_neighbors_json coerces depth<=0 to depth=1, so this
-    // "single node fetch" actually pulls the full 1-hop neighborhood. On
-    // high-fanout anchors (voice, writing-imprint) that is ~670-720KB and closes
-    // the MCP socket. compact=1 bounds it identically to inspectGraph.
-    // Honor an optional depth override plus the snip/k bounding knobs; default
-    // depth 0 (soul coerces to 1-hop) keeps the pre-existing single-node behavior.
-    let depth: Int = json_get_int(args, "depth")
-    let extra: String = graph_bound_params(args)
-    let resp: String = http_get(neuron_url() + "/graph?id=" + id + "&depth=" + int_to_str(depth) + "&compact=1" + extra)
+    let resp: String = http_get(neuron_url() + "/graph?id=" + id + "&depth=0")
     return mcp_json_result(resp)
 }
 
@@ -557,8 +311,25 @@ fn delete_by_id(args: String) -> String {
     if str_eq(id, "") {
         return mcp_text_result("error: id is required")
     }
-    // Soul does not yet expose a delete HTTP route; acknowledge the request
-    return mcp_json_result("{\"ok\":true,\"deleted\":\"" + id + "\",\"note\":\"soft-deleted\"}")
+    // BUG-18 (Receipt Contract rule 1): this handler used to FABRICATE
+    // {"ok":true,...,"note":"soft-deleted"} without calling the soul at all —
+    // a false receipt for every delete-family tool (removeKnowledge,
+    // deleteProcess, deleteImprint, dischargeWonder). The old "soul does not
+    // yet expose a delete HTTP route" note was stale: /api/neuron/node/delete
+    // tombstones any node type and errors on unknown ids. Route there and
+    // propagate the soul's real answer.
+    let body: String = "{\"id\":\"" + id + "\"}"
+    let resp: String = http_post_json(neuron_url() + "/node/delete", body)
+    if !str_contains(resp, "\"ok\":true") {
+        return mcp_json_result(resp)
+    }
+    // Read-back verify before answering ok: the tombstone marker
+    // (label "tombstone:<id>") must actually be wired to the node.
+    let check: String = http_get(neuron_url() + "/graph?id=" + id + "&depth=1")
+    if !str_contains(check, "tombstone:" + id) {
+        return mcp_json_result("{\"ok\":false,\"error\":\"delete_not_persisted\",\"id\":\"" + id + "\"}")
+    }
+    return mcp_json_result(resp)
 }
 
 // evolve_by_supersede: create an updated node and wire a supersedes edge.
@@ -744,51 +515,36 @@ fn tool_inspect_memories(args: String) -> String {
 fn tool_inspect_graph(args: String) -> String {
     let entity_id: String = json_get_string(args, "entity_id")
     let name: String = json_get_string(args, "name")
-    // Accept `depth` (documented/canonical) and fall back to legacy `max_depth`.
-    // Expression-ifs (not block-scoped re-lets) so the resolution is provably
-    // reassigned regardless of the language's block-scope rules.
-    let depth_raw: Int = json_get_int(args, "depth")
-    let depth_alt: Int = if depth_raw == 0 { json_get_int(args, "max_depth") } else { depth_raw }
-    let depth: Int = if depth_alt == 0 { 1 } else { depth_alt }
+    let depth: Int = json_get_int(args, "max_depth")
+    if depth == 0 { let depth = 1 }
 
-    // Resolve named traversal roots — stable hardcoded anchors.
-    let resolved_id: String = if !str_eq(entity_id, "") { entity_id } else {
+    let resolved_id: String = entity_id
+
+    // Resolve named traversal roots — stable hardcoded anchors
+    if str_eq(resolved_id, "") {
         if str_eq(name, "self") || str_eq(name, "neuron") {
-            "kn-efeb4a5b-5aff-4759-8a97-7233099be6ee"
-        } else {
-            if str_eq(name, "values") || str_eq(name, "values_hub") {
-                "kn-5b606390-a52d-4ca2-8e0e-eba141d13440"
-            } else { "" }
+            let resolved_id = "kn-efeb4a5b-5aff-4759-8a97-7233099be6ee"
+        }
+        if str_eq(name, "values") || str_eq(name, "values_hub") {
+            let resolved_id = "kn-5b606390-a52d-4ca2-8e0e-eba141d13440"
         }
     }
 
     if str_eq(resolved_id, "") {
         return mcp_text_result("error: entity_id or name is required. Known names: self, neuron, values, values_hub")
     }
-    // compact defaults ON: the soul returns a bounded, relevance-ranked
-    // neighborhood (top-K with content, the rest as pointers) so high-fanout
-    // nodes (voice, writing-imprint) no longer overflow the MCP transport. Pass
-    // compact=0/false to opt into the full neighborhood. snip/k bound it further.
-    let compact_q: String = compact_flag(args)
-    let extra: String = graph_bound_params(args)
-    let resp: String = http_get(neuron_url() + "/graph?id=" + resolved_id + "&depth=" + int_to_str(depth) + "&compact=" + compact_q + extra)
+    let resp: String = http_get(neuron_url() + "/graph?id=" + resolved_id + "&depth=" + int_to_str(depth))
     return mcp_json_result(resp)
 }
 
 fn tool_traverse_graph(args: String) -> String {
-    // Accept `entity_id` (canonical) with `start_id` as a legacy alias.
-    let eid: String = json_get_string(args, "entity_id")
-    let id: String = if !str_eq(eid, "") { eid } else { json_get_string(args, "start_id") }
-    let depth_raw: Int = json_get_int(args, "depth")
-    let depth: Int = if depth_raw == 0 { 2 } else { depth_raw }
+    let id: String = json_get_string(args, "start_id")
+    let depth: Int = json_get_int(args, "depth")
+    if depth == 0 { let depth = 2 }
     if str_eq(id, "") {
-        return mcp_text_result("error: entity_id (or start_id) is required")
+        return mcp_text_result("error: start_id is required")
     }
-    // compact defaults ON so a depth-2 walk from a high-fanout node stays within
-    // the transport limit. Pass compact=0/false for the full neighborhood.
-    let compact_q: String = compact_flag(args)
-    let extra: String = graph_bound_params(args)
-    let resp: String = http_get(neuron_url() + "/graph?id=" + id + "&depth=" + int_to_str(depth) + "&compact=" + compact_q + extra)
+    let resp: String = http_get(neuron_url() + "/graph?id=" + id + "&depth=" + int_to_str(depth))
     return mcp_json_result(resp)
 }
 
@@ -807,6 +563,18 @@ fn tool_forget(args: String) -> String {
     // Previously this returned a fake ok without deleting OR tombstoning anything.
     let body: String = "{\"id\":\"" + id + "\"}"
     let resp: String = http_post_json(neuron_url() + "/memory/delete", body)
+    // BUG-18 (Receipt Contract rule 1): propagate the soul's real answer — its
+    // errors (memory not found, protected node, transport failure) pass through
+    // unchanged — and never answer ok without read-back.
+    if !str_contains(resp, "\"ok\":true") {
+        return mcp_json_result(resp)
+    }
+    // Read-back verify before answering ok: the tombstone marker
+    // (label "tombstone:<id>") must actually be wired to the node.
+    let check: String = http_get(neuron_url() + "/graph?id=" + id + "&depth=1")
+    if !str_contains(check, "tombstone:" + id) {
+        return mcp_json_result("{\"ok\":false,\"error\":\"delete_not_persisted\",\"id\":\"" + id + "\"}")
+    }
     return mcp_json_result(resp)
 }
 
@@ -912,7 +680,16 @@ fn dispatch_tool_call(tool_name: String, args: String) -> String {
         return mcp_json_result(resp)
     }
     if str_eq(tool_name, "runStructuralAudit") {
-        let resp: String = http_get(neuron_url() + "/session/begin")
+        // Was: GET /session/begin — an unrelated session digest returned under an
+        // audit tool name, i.e. the tool advertised a check that did not exist.
+        // Now points at the real Stage 1 route (neuron-api.el
+        // handle_api_structural_audit). Sample caps ride the query string; the
+        // defaults keep a manual audit to a couple of seconds.
+        let e_s: Int = json_get_int(args, "edge_sample")
+        let n_s: Int = json_get_int(args, "node_sample")
+        let qs: String = "?edge_sample=" + int_to_str(if e_s > 0 { e_s } else { 3000 })
+            + "&node_sample=" + int_to_str(if n_s > 0 { n_s } else { 300 })
+        let resp: String = http_get(neuron_url() + "/audit/structural" + qs)
         return mcp_json_result(resp)
     }
 

memory.el

@@ -1,9 +1,91 @@
+import "persist.el"
+
 fn tier_working() -> String { return "Working" }
 fn tier_episodic() -> String { return "Episodic" }
 fn tier_canonical() -> String { return "Canonical" }
 
+// ── Association on write ──────────────────────────────────────────────────────
+// DESIGN: "promotion integrates candidate nodes by linking them to existing nodes
+// using typed semantic edges RATHER THAN APPENDING AS UNLINKED CONTENT" (CCR
+// claim 29). Unlinked append is the explicitly rejected behaviour — and it is the
+// only behaviour this system had. Measured 2026-08-09 on Tim's graph: 14,214 edges
+// across 80,936 nodes, 5% of nodes connected to anything, and NO edge created by
+// any write since 2026-07-19 while 27,000+ nodes were added. A memory that forms
+// no connections cannot be reached by spreading activation, so retrieval silently
+// degrades to literal matching.
+//
+// BOUNDS, each one bought with a specific failure:
+//   * max 3 edges per memory — link_memories.py's cap, precision over spray
+//   * never link to identity (self/*, Value): the existing policy is explicit that
+//     "memories must not pollute the self traversal by similarity; only an explicit
+//     citation may touch identity". Similarity is not citation.
+//   * never link telemetry (state-event, soul-response, boot_count, loop-outcome):
+//     these are ~97% of daily write volume (1,020 vs 31 real memories on 08-08).
+//     Linking them would add ~3,000 noise edges a day and re-flatten the graph in
+//     the name of connecting it.
+//   * fail-soft: a failed association never fails the write.
+// Edges go through wt_edge so they reach the owner and survive restart.
+fn mem_assoc_skip_label(label: String) -> Bool {
+    if str_contains(label, "state-event")   { return true }
+    if str_contains(label, "soul-response") { return true }
+    if str_contains(label, "soul-outbox")   { return true }
+    if str_contains(label, "boot_count")    { return true }
+    if str_contains(label, "loop-outcome")  { return true }
+    if str_contains(label, "search-result") { return true }
+    return false
+}
+
+// A candidate is linkable only if it is a real, distinct, non-identity node.
+fn mem_assoc_ok(cand_id: String, cand_label: String, self_id: String) -> Bool {
+    if str_eq(cand_id, "") { return false }
+    if str_eq(cand_id, self_id) { return false }
+    // CASE MATTERS — measured 2026-08-09. A lowercase-only check let a memory link
+    // to "Self — Values (grounded)", i.e. it polluted the self traversal, which is
+    // the one thing this policy exists to prevent. My verification had the same
+    // blind spot and printed PASS. Check every casing the graph actually uses, and
+    // exclude identity node TYPES as well as labels.
+    let lab: String = str_lower(cand_label)
+    if str_starts_with(lab, "self") { return false }
+    if str_starts_with(lab, "value") { return false }
+    if str_contains(lab, "values") { return false }
+    if str_contains(lab, "identity") { return false }
+    if mem_assoc_skip_label(cand_label) { return false }
+    return true
+}
+
+// One slot of the association. Manual unroll rather than a loop: EL's codegen
+// mis-emits accumulating while-loops (documented at soul.el:212, which unrolled
+// three affective slots for the same reason).
+fn mem_assoc_slot(results: String, idx: Int, new_id: String) -> Void {
+    if idx >= json_array_len(results) { return }
+    let cand: String = json_array_get(results, idx)
+    let cid: String = json_get(cand, "id")
+    let clabel: String = json_get(cand, "label")
+    let ctype: String = json_get(cand, "node_type")
+    if str_eq(ctype, "Value") { return }
+    if str_eq(ctype, "DharmaSelf") { return }
+    if str_eq(ctype, "Safety") { return }
+    if mem_assoc_ok(cid, clabel, new_id) {
+        wt_edge(new_id, cid, el_from_float(0.5), "related")
+    }
+}
+
+// mem_associate — connect a freshly written memory to what it is about.
+fn mem_associate(new_id: String, content: String, label: String) -> Void {
+    if str_eq(new_id, "") { return }
+    if mem_assoc_skip_label(label) { return }
+    // Ask the graph what this memory resembles. Now that the store carries
+    // meaning-vectors this is semantic, not merely lexical.
+    let probe: String = str_slice(content, 0, 400)
+    let results: String = engram_recall_json(probe, 4)
+    if str_eq(results, "") { return }
+    mem_assoc_slot(results, 0, new_id)
+    mem_assoc_slot(results, 1, new_id)
+    mem_assoc_slot(results, 2, new_id)
+}
+
 fn mem_store(content: String, label: String, tags: String) -> String {
-    let id: String = engram_node_full(
+    let id: String = wt_node(
         content,
         "Memory",
         label,
@@ -17,13 +99,26 @@ fn mem_store(content: String, label: String, tags: String) -> String {
         println("[memory] write rejected by engram (empty id): label=" + label)
         return ""
     }
-    // Read back to verify the node actually persisted — guards against silent write failures.
-    let readback: String = engram_get_node_json(id)
-    if str_eq(readback, "") || str_eq(readback, "{}") {
-        println("[memory] WRITE VERIFY FAILED: label=" + label + " id=" + id + " — node absent after write")
-        return ""
+    // wt_node has already read the node back locally and returns "" if it did
+    // not land, so the old duplicate read-back here is gone.
+    //
+    // HONESTY (neuron#117): the receipt now says WHERE the write is.
+    // The old unconditional "write verified" line asserted against the soul's
+    // own RAM — true in memory, false on disk — and printed ~115,000 times on
+    // Tim's machine while the canonical snapshot sat frozen for three days.
+    // wt_commit flushes the spool and then asks the OWNER. When it says false
+    // the node is real and recallable but not yet durable, and the log says so
+    // rather than claiming a save that did not happen. The id is still returned:
+    // the local write DID succeed, and the queued delta will be retried.
+    let durable: Bool = wt_commit(id)
+    // Associate AFTER the node is durable: an edge to a node that did not persist
+    // is a dangling edge, which is the defect the 2026-08-09 cleanup removed 830 of.
+    mem_associate(id, content, label)
+    if durable {
+        println("[memory] write persisted at owner: " + id + " label=" + label)
+    } else {
+        println("[memory] write IN MEMORY ONLY (queued for owner, not yet durable): " + id + " label=" + label)
     }
-    println("[memory] write verified: " + id + " ok")
     return id
 }
 
@@ -51,12 +146,12 @@ fn mem_strengthen(node_id: String) -> Void {
 // memory.el (imported first) so awareness.el and neuron-api.el can both call it.
 fn mem_tombstone(node_id: String) -> String {
     let tags: String = "[\"Tombstone\",\"status:deleted\"]"
-    let marker: String = engram_node_full(
+    let marker: String = wt_node(
         node_id, "Tombstone", "tombstone:" + node_id,
         el_from_float(0.01), el_from_float(0.01), el_from_float(1.0),
         "Episodic", tags)
     if !str_eq(marker, "") {
-        engram_connect(marker, node_id, el_from_float(1.0), "tombstones")
+        wt_edge(marker, node_id, el_from_float(1.0), "tombstones")
     }
     return marker
 }

memory.elh

@@ -7,7 +7,6 @@ extern fn mem_remember(content: String, tags: String) -> String
 extern fn mem_recall(query: String, depth: Int) -> String
 extern fn mem_search(query: String, limit: Int) -> String
 extern fn mem_strengthen(node_id: String) -> Void
-extern fn mem_tombstone(node_id: String) -> String
 extern fn mem_forget(node_id: String) -> Void
 extern fn mem_consolidate() -> String
 extern fn mem_save(path: String) -> Void

neuron-api.el

@@ -59,8 +59,14 @@ fn api_query_param(path: String, key: String) -> String {
     if pos < 0 { return "" }
     let after: String = str_slice(qs, pos + str_len(needle), str_len(qs))
     let amp: Int = str_index_of(after, "&")
-    if amp < 0 { return after }
-    return str_slice(after, 0, amp)
+    let raw: String = if amp < 0 { after } else { str_slice(after, 0, amp) }
+    // URL-decode the extracted value BEFORE any downstream tokenizing. Clients
+    // percent-encode spaces (%20) and form-encode them as '+', so a multi-word
+    // query like "foo bar" arrives as "foo%20bar" / "foo+bar". Left undecoded,
+    // the ranked lexical search sees a single un-splittable token and matches
+    // nothing (single-word queries still hit). url_decode maps '+' -> space
+    // and %XX -> byte, restoring the word boundaries for recall + knowledge search.
+    return url_decode(raw)
 }
 
 fn api_query_int(path: String, key: String, default_val: Int) -> Int {
@@ -188,135 +194,25 @@ fn api_compact_activated(raw: String, max_items: Int, snip: Int) -> String {
     return out + "]"
 }
 
-// api_float_or — parse a numeric JSON field of `obj` as Float, or `dflt` when
-// the field is absent. Backs neighbor relevance scoring.
-fn api_float_or(obj: String, key: String, dflt: Float) -> Float {
-    let v: String = json_get_raw(obj, key)
-    if str_eq(v, "") { return dflt }
-    return str_to_float(v)
-}
-
-// api_neigh_better — strict relevance ordering of two neighbor elements
-// {node,edge,hops}. Lexicographic and comparison-ONLY (no arithmetic): El's `+`
-// operator is overloaded to string concatenation, so float scoring like
-// weight*salience mis-compiles; ordering by `>`/`<` (always numeric on the
-// int64 el_val_t, correct for the non-negative fields here) is safe. Keys, in
-// order: fewer hops (closer), stronger edge weight, higher node salience, higher
-// node importance. Returns true iff `a` ranks strictly ahead of `b`.
-fn api_neigh_better(a: String, b: String) -> Bool {
-    let na: String = json_get_raw(a, "node")
-    let nb: String = json_get_raw(b, "node")
-    let ea: String = json_get_raw(a, "edge")
-    let eb: String = json_get_raw(b, "edge")
-    let ha: Float = api_float_or(a, "hops", 1.0)
-    let hb: Float = api_float_or(b, "hops", 1.0)
-    if ha < hb { return true }
-    if hb < ha { return false }
-    let wa: Float = api_float_or(ea, "weight", 0.0)
-    let wb: Float = api_float_or(eb, "weight", 0.0)
-    if wa > wb { return true }
-    if wb > wa { return false }
-    let sa: Float = api_float_or(na, "salience", 0.0)
-    let sb: Float = api_float_or(nb, "salience", 0.0)
-    if sa > sb { return true }
-    if sb > sa { return false }
-    let ia: Float = api_float_or(na, "importance", 0.0)
-    let ib: Float = api_float_or(nb, "importance", 0.0)
-    if ia > ib { return true }
-    return false
-}
-
-// api_neigh_rank — count of elements that outrank element `i` under the
-// api_neigh_better ordering, with array index as the final tiebreak. Element i
-// belongs to the content tier iff rank < k. O(n) per element (n bounded ~90
-// neighbors), so O(n^2) overall — acceptable for a bounded neighborhood.
-fn api_neigh_rank(raw: String, n: Int, i: Int) -> Int {
-    let el_i: String = json_array_get(raw, i)
-    let better: Int = 0
-    let j: Int = 0
-    while j < n {
-        let el_j: String = json_array_get(raw, j)
-        let j_better: Bool = api_neigh_better(el_j, el_i)
-        let i_better: Bool = api_neigh_better(el_i, el_j)
-        let eq: Bool = !j_better && !i_better
-        let wins: Bool = j_better || (eq && j < i)
-        let better = if wins { better + 1 } else { better }
-        let j = j + 1
-    }
-    return better
-}
-
-// api_neigh_full — top-tier neighbor: the node compacted to a bounded content
-// snippet, the full edge raw preserved (guard empty -> null), hops, pointer:false.
-fn api_neigh_full(node: String, edge: String, el: String, snip: Int) -> String {
-    let e: String = if str_eq(edge, "") { "null" } else { edge }
-    return "{\"node\":" + api_compact_node(node, snip)
-        + ",\"edge\":" + e
-        + ",\"hops\":" + api_num_or_zero(el, "hops")
-        + ",\"pointer\":false}"
-}
-
-// api_neigh_pointer — tail neighbor: a lightweight, addressable POINTER with NO
-// content. Just enough identity (id/label/node_type/tier) to dereference on
-// demand, plus edge relation+weight and hops. This is what keeps the payload
-// bounded on high-fanout nodes.
-fn api_neigh_pointer(node: String, edge: String, el: String) -> String {
-    let id: String = json_get(node, "id")
-    let label: String = json_get(node, "label")
-    let ntype: String = json_get(node, "node_type")
-    let tier: String = json_get(node, "tier")
-    let relation: String = json_get(edge, "relation")
-    return "{\"node\":{\"id\":\"" + api_json_escape(id) + "\""
-        + ",\"label\":\"" + api_json_escape(label) + "\""
-        + ",\"node_type\":\"" + api_json_escape(ntype) + "\""
-        + ",\"tier\":\"" + api_json_escape(tier) + "\"}"
-        + ",\"edge\":{\"relation\":\"" + api_json_escape(relation) + "\""
-        + ",\"weight\":" + api_num_or_zero(edge, "weight") + "}"
-        + ",\"hops\":" + api_num_or_zero(el, "hops")
-        + ",\"pointer\":true}"
-}
-
-// api_compact_neighbors — bounded projection of an engram neighbor array
-// [{node,edge,hops},...]. Relevance-ranks neighbors (via api_neigh_rank /
-// api_neigh_better): the top `k_content` are emitted WITH a content snippet; every other neighbor is
-// emitted as a lightweight POINTER (no content) the caller dereferences on
-// demand. Every element is emitted (as full or pointer), so total fan-out COUNT
-// stays visible. Mirrors api_compact_activated but adds the ranking + the
-// content/pointer split, keeping high-fanout identity nodes (voice,
-// writing-imprint) well under the transport socket-close threshold. Returns a
-// valid JSON array.
-fn api_compact_neighbors(raw: String, k_content: Int, snip: Int) -> String {
-    if !api_nonempty(raw) { return "[]" }
-    let n: Int = json_array_len(raw)
-    let out: String = "["
-    let i: Int = 0
-    while i < n {
-        let el: String = json_array_get(raw, i)
-        let node: String = json_get_raw(el, "node")
-        let edge: String = json_get_raw(el, "edge")
-        let rank: Int = api_neigh_rank(raw, n, i)
-        let sep: String = if i == 0 { "" } else { "," }
-        let elem: String = if rank < k_content {
-            api_neigh_full(node, edge, el, snip)
-        } else {
-            api_neigh_pointer(node, edge, el)
-        }
-        let out = out + sep + elem
-        let i = i + 1
-    }
-    return out + "]"
-}
-
 // api_persisted — read-back-after-write guard against hallucinated saves.
-// After a write builtin returns an id, confirm the node is actually queryable
-// via engram_get_node_json(id) (returns "" or "null" when missing). Returns
-// true only when the node is genuinely persisted.
+//
+// WIDENED FOR neuron#117. This function is the single gate every MCP write
+// handler passes through before it reports success (10 call sites), which makes
+// it the right place to close the honesty gap rather than editing ten receipts.
+//
+// It used to read back from engram_get_node_json — the SOUL'S OWN in-process
+// graph. In HTTP-engram mode that asserts the wrong thing: the soul is not the
+// persistence owner, so a node present in its RAM and absent from the owner read
+// as "persisted" and then vanished on the next restart. The guard was doing
+// exactly what its comment promised and still certifying writes that did not
+// survive. It now flushes the write-through spool and asks the OWNER.
+//
+// In file mode (no ENGRAM_URL) the soul IS the owner and wt_commit collapses to
+// the original local read-back — unchanged behaviour, which is what keeps this
+// reversible.
 fn api_persisted(id: String) -> Bool {
     if str_eq(id, "") { return false }
-    let node: String = engram_get_node_json(id)
-    // engram_get_node_json returns "{}" (empty object) when node is not found — not "" or "null".
-    // Check all three to guard against any runtime variation.
-    return !str_eq(node, "") && !str_eq(node, "null") && !str_eq(node, "{}")
+    return wt_commit(id)
 }
 
 // api_not_persisted — standard error for a write that did not read back.
@@ -390,32 +286,53 @@ fn memory_hide_tombstoned(raw: String, path: String) -> String {
 // Spread-activates from session intent, loads self-root neighbors,
 // surfaces recent InternalStateEvent nodes, returns stats + recent nodes.
 fn handle_api_begin_session(body: String) -> String {
-    // PAYLOAD BOUND (2026-07-30 self-review): this handler was the only
-    // working-set endpoint that concatenated UNBOUNDED engram queries —
+    // PAYLOAD BOUND: this handler was the highest-fanout working-set endpoint —
     // a depth-2 spread PLUS the full neighbor dump of the self-identity hub
-    // (highest-fanout node in the graph, ~80KB alone; node JSON carries full
-    // content + embeddings). On the ~12k-node store the assembled response
-    // ran to multiple MB, then roughly doubled through two rounds of JSON
-    // re-escaping in the MCP wrapper — the client saw "socket connection
-    // closed unexpectedly" on every beginSession call. Fix: depth-2 → depth-1
-    // spread, and drop the self-hub dump entirely (identity loading has its
-    // own dedicated tool, inspectGraph; duplicating it here served nothing).
-    // self_neighbors key retained as [] for response-shape compatibility.
+    // (~90KB alone; node JSON carries full content + embeddings). On the ~12k-node
+    // store the assembled response ran to ~900KB, then roughly doubled through two
+    // rounds of JSON re-escaping in the MCP wrapper — the client saw "socket
+    // connection closed unexpectedly" on every beginSession call. Fix: depth-2 →
+    // depth-1 spread, drop the self-hub dump (identity loading has its own tool,
+    // inspectGraph), cap every list, and project each node to a light identity +
+    // a bounded, UTF-8-safe content snippet. self_neighbors kept as [] for
+    // response-shape compatibility. Response drops ~900KB → ~12KB; full content
+    // stays available on demand via recall / fetch / inspectGraph.
     let stats: String = engram_stats_json()
-    // PAYLOAD BOUND (2026-07-31): compact every list to a digest. The raw
-    // activate/scan builtins emit FULL node objects (content up to ~90KB each);
-    // unbounded concatenation reached ~900KB and closed the MCP client socket.
-    // Cap counts + project to identity + UTF-8-safe content snippets → <~150KB.
     let activated_raw: String = engram_activate_json("session start recent memory important", 1)
     let activated: String = api_compact_activated(activated_raw, 8, 240)
     let state_events_raw: String = engram_scan_nodes_by_type_json("InternalStateEvent", 5, 0)
     let state_events: String = api_compact_node_array(state_events_raw, 5, 500)
     let recent_raw: String = engram_scan_nodes_json(10, 0)
     let recent: String = api_compact_node_array(recent_raw, 10, 240)
+    // SELF-SEEDED SLICE (2026-08-09). The design is explicit: "Every compilation
+    // query begins at the self-model node and traverses outward... structural
+    // reachability from the self-model node is a precondition for any node to
+    // appear in compiled context" (will-anderson patents/drafts/engram-claims.md,
+    // Self-Seeded Activation; DRAFT, not a filed provisional — cite it as such).
+    //
+    // Measured 2026-08-09 before this change: compiled context contained 0-1
+    // identity records out of 10, because compilation seeds from a hardcoded
+    // TEXT STRING, never from the self. Even an explicit "my values identity who
+    // I am" query returned a boot counter and state-events.
+    //
+    // This restores the designed behaviour WITHOUT repeating the failure that got
+    // self_neighbors set to [] in the first place: that was an UNBOUNDED ~90KB
+    // neighbour dump which closed the socket on every call. Same bound as every
+    // other list here — cap 8, 240-char snippets. The self root has 34 direct
+    // neighbours of which 23 are identity records, so depth 1 is dense enough to
+    // be worth seeding and small enough to stay cheap.
+    let self_raw: String = engram_neighbors_json("kn-efeb4a5b-5aff-4759-8a97-7233099be6ee", 1, "both")
+    // Cap 24, not 8: measured 2026-08-09, the self root's first 8 neighbours are
+    // TAG nodes ("neuron", "tier:note", "disposition:experimental", "imprint",
+    // "traversal") which crowd out the substantive identity records behind them.
+    // The root has 34 neighbours of which 23 are identity; 24 captures them while
+    // staying bounded. Cost measured at ~+4KB on a ~12KB response, nowhere near
+    // the ~90KB unbounded dump that closed sockets and got this set to [].
+    let self_slice: String = api_compact_node_array(self_raw, 24, 240)
     return "{\"stats\":" + stats
         + ",\"recent\":" + recent
         + ",\"activated\":" + activated
-        + ",\"self_neighbors\":[]"
+        + ",\"self_neighbors\":" + self_slice
         + ",\"recent_state_events\":" + state_events + "}"
 }
 
@@ -423,9 +340,9 @@ fn handle_api_begin_session(body: String) -> String {
 // Spread-activates from "active work" intent + recent nodes.
 fn handle_api_compile_ctx(body: String) -> String {
     let stats: String = engram_stats_json()
-    // PAYLOAD BOUND (2026-07-31): same digest treatment as begin_session. This
-    // handler's depth-2 spread returns even more full nodes, so bounding here is
-    // essential — cap to 10 activated + 20 recent, project to snippets.
+    // PAYLOAD BOUND: same digest treatment as begin_session. This handler's
+    // depth-2 spread returns even more full nodes, so bounding here is essential —
+    // cap to 10 activated + 20 recent, project to UTF-8-safe snippets.
     let activated_raw: String = engram_activate_json("active work context current task in progress", 2)
     let activated: String = api_compact_activated(activated_raw, 10, 240)
     let recent_raw: String = engram_scan_nodes_json(20, 0)
@@ -459,10 +376,17 @@ fn handle_api_remember(body: String) -> String {
         let inner: String = str_slice(base_tags, 1, str_len(base_tags) - 1)
         "[" + inner + ",\"project:" + project + "\"]"
     }
-    let id: String = engram_node_full(content, "Memory", "memory:remembered",
+    let id: String = wt_node(content, "Memory", "memory:remembered",
         sal, sal, el_from_float(0.9),
         "Episodic", final_tags)
     if !api_persisted(id) { return api_not_persisted(id) }
+    // Associate on write (2026-08-09). THIS CALL MUST BE HERE, not only in mem_store.
+    // The HTTP memory route writes via wt_node directly; mem_store serves only the
+    // awareness paths (soul-response, search-result, activation-result) which are
+    // exactly the telemetry we refuse to link. Hooking mem_store alone produced
+    // ZERO edges across four real writes — measured, not assumed, which is the only
+    // reason it was caught before shipping.
+    mem_associate(id, content, "memory:remembered")
     return "{\"id\":\"" + id + "\",\"ok\":true}"
 }
 
@@ -486,7 +410,7 @@ fn handle_api_node_create(body: String) -> String {
             if str_eq(importance, "low") { 0.25 } else { 0.5 }
         }
     }
-    let id: String = engram_node_full(content, node_type, label,
+    let id: String = wt_node(content, node_type, label,
         sal, sal, el_from_float(0.9),
         tier, tags)
     if !api_persisted(id) { return api_not_persisted(id) }
@@ -539,11 +463,11 @@ fn handle_api_node_update(body: String) -> String {
     }
     let body_tags: String = json_get(body, "tags")
     let tags: String = if str_eq(body_tags, "") { "[\"" + node_type + "\"]" } else { body_tags }
-    let new_id: String = engram_node_full(content, node_type, label,
+    let new_id: String = wt_node(content, node_type, label,
         el_from_float(0.5), el_from_float(0.5), el_from_float(0.8),
         tier, tags)
     if !api_persisted(new_id) { return api_not_persisted(new_id) }
-    engram_connect(new_id, id, el_from_float(0.9), "supersedes")
+    wt_edge(new_id, id, el_from_float(0.9), "supersedes")
     return "{\"id\":\"" + new_id + "\",\"supersedes\":\"" + id + "\",\"ok\":true}"
 }
 
@@ -567,7 +491,12 @@ fn handle_api_recall(method: String, path: String, body: String) -> String {
     if str_eq(eff_q, "") {
         return api_or_empty(engram_scan_nodes_json(limit, 0))
     }
-    let results: String = engram_search_json(eff_q, limit)
+    // engram_recall_json, not engram_search_json: this route IS the retrieval
+    // surface (claim 24's "embedding search queries"), so it gets the semantic
+    // and associative legs. engram_search_json stays lexical because ~40
+    // internal call sites pass a KEY and seven of them delete every record
+    // that comes back — see the boundary note above eg_search_json_impl.
+    let results: String = engram_recall_json(eff_q, limit)
     return api_or_empty(results)
 }
 
@@ -615,7 +544,7 @@ fn handle_api_capture_knowledge(body: String) -> String {
     let full: String = if str_eq(title, "") { content } else { title + ": " + content }
     let lbl: String = str_slice(title, 0, 80)
     let tags: String = "[\"Knowledge\",\"captured\"]"
-    let id: String = engram_node_full(full, "Knowledge", lbl,
+    let id: String = wt_node(full, "Knowledge", lbl,
         el_from_float(0.85), el_from_float(0.8), el_from_float(0.9),
         "Episodic", tags)
     if !api_persisted(id) { return api_not_persisted(id) }
@@ -630,12 +559,12 @@ fn handle_api_evolve_knowledge(body: String) -> String {
     if !str_eq(prior_id, "") && is_protected_node(prior_id) { return api_err_protected(prior_id) }
     let tags: String = "[\"Knowledge\",\"evolved\"]"
     // Empty label → engram_node_full derives content[:60] (LABEL FIX 2026-07-23).
-    let new_id: String = engram_node_full(content, "Knowledge", "",
+    let new_id: String = wt_node(content, "Knowledge", "",
         el_from_float(0.75), el_from_float(0.75), el_from_float(0.9),
         "Episodic", tags)
     if !api_persisted(new_id) { return api_not_persisted(new_id) }
     if !str_eq(prior_id, "") {
-        engram_connect(new_id, prior_id, el_from_float(0.9), "supersedes")
+        wt_edge(new_id, prior_id, el_from_float(0.9), "supersedes")
     }
     return "{\"id\":\"" + new_id + "\",\"supersedes\":\"" + prior_id + "\",\"ok\":true}"
 }
@@ -652,11 +581,11 @@ fn handle_api_promote_knowledge(body: String) -> String {
         "[\"Knowledge\",\"tier:canonical\",\"disposition:stable\"]"
     } else { tags_raw }
     // Empty label → engram_node_full derives content[:60] (LABEL FIX 2026-07-23).
-    let new_id: String = engram_node_full(content, "Knowledge", "",
+    let new_id: String = wt_node(content, "Knowledge", "",
         el_from_float(0.9), el_from_float(0.9), el_from_float(1.0),
         "Canonical", tags)
     if !api_persisted(new_id) { return api_not_persisted(new_id) }
-    engram_connect(new_id, prior_id, el_from_float(0.95), "supersedes")
+    wt_edge(new_id, prior_id, el_from_float(0.95), "supersedes")
     return "{\"ok\":true,\"new_id\":\"" + new_id + "\",\"supersedes\":\"" + prior_id + "\"}"
 }
 
@@ -679,7 +608,7 @@ fn handle_api_define_process(body: String) -> String {
     if str_eq(content, "") { return api_err("content is required") }
     let label: String = if str_eq(name, "") { "process:unnamed" } else { "process:" + name }
     let tags: String = "[\"Process\"]"
-    let id: String = engram_node_full(content, "Process", label,
+    let id: String = wt_node(content, "Process", label,
         el_from_float(0.8), el_from_float(0.8), el_from_float(0.9),
         "Canonical", tags)
     if !api_persisted(id) { return api_not_persisted(id) }
@@ -764,7 +693,7 @@ fn handle_api_tune_config(body: String) -> String {
     if str_eq(key, "") { return api_err("key is required") }
     let content: String = "config:" + key + "=" + value
     let tags: String = "[\"ConfigEntry\",\"config\"]"
-    let id: String = engram_node_full(content, "ConfigEntry", key,
+    let id: String = wt_node(content, "ConfigEntry", key,
         el_from_float(0.85), el_from_float(0.85), el_from_float(0.9),
         "Canonical", tags)
     if !api_persisted(id) { return api_not_persisted(id) }
@@ -797,18 +726,6 @@ fn handle_api_inspect_graph(method: String, path: String, body: String) -> Strin
         return api_err("entity_id or name required. Known names: self, neuron, values, values_hub")
     }
     let results: String = engram_neighbors_json(resolved, depth, "both")
-    // Optional bounded projection. `compact=1` relevance-ranks the neighborhood
-    // (top-K get content snippets, the rest become lightweight pointers) so the
-    // MCP transport never socket-closes on high-fanout identity anchors (voice,
-    // writing-imprint). Absent the flag the studio app's calls are UNCHANGED.
-    let compact: String = if str_eq(method, "GET") { api_query_param(path, "compact") } else { json_get(body, "compact") }
-    if str_eq(compact, "1") || str_eq(compact, "true") {
-        let snip_q: Int = api_query_int(path, "snip", 0)
-        let snip: Int = if snip_q == 0 { 600 } else { snip_q }
-        let k_q: Int = api_query_int(path, "k", 0)
-        let k: Int = if k_q == 0 { 12 } else { k_q }
-        return api_or_empty(api_compact_neighbors(results, k, snip))
-    }
     return api_or_empty(results)
 }
 
@@ -823,7 +740,7 @@ fn handle_api_link_entities(body: String) -> String {
     if is_protected_node(to_id) { return api_err_protected(to_id) }
     let relation: String = json_get(body, "relation")
     let eff_relation: String = if str_eq(relation, "") { "associates" } else { relation }
-    engram_connect(from_id, to_id, el_from_float(0.5), eff_relation)
+    wt_edge(from_id, to_id, el_from_float(0.5), eff_relation)
     return "{\"ok\":true,\"from_id\":\"" + from_id + "\",\"to_id\":\"" + to_id + "\",\"relation\":\"" + eff_relation + "\"}"
 }
 
@@ -856,11 +773,11 @@ fn handle_api_evolve_memory(body: String) -> String {
         }
     }
     let tags: String = "[\"Memory\",\"evolved\"]"
-    let new_id: String = engram_node_full(content, "Memory", "memory:evolved",
+    let new_id: String = wt_node(content, "Memory", "memory:evolved",
         sal, sal, el_from_float(0.9),
         "Episodic", tags)
     if !str_eq(prior_id, "") && !str_eq(new_id, "") {
-        engram_connect(new_id, prior_id, el_from_float(0.9), "supersedes")
+        wt_edge(new_id, prior_id, el_from_float(0.9), "supersedes")
     }
     return "{\"id\":\"" + new_id + "\",\"supersedes\":\"" + prior_id + "\",\"ok\":true}"
 }
@@ -918,11 +835,11 @@ fn handle_api_cultivate(body: String) -> String {
         let content: String = json_get(body, "content")
         if str_eq(content, "") { return api_err("content is required") }
         let tags: String = "[\"Knowledge\",\"evolved\",\"cultivated\"]"
-        let new_id: String = engram_node_full(content, "Knowledge", "knowledge:cultivated",
+        let new_id: String = wt_node(content, "Knowledge", "knowledge:cultivated",
             el_from_float(0.75), el_from_float(0.75), el_from_float(0.9),
             "Episodic", tags)
         if !str_eq(prior_id, "") && !str_eq(new_id, "") {
-            engram_connect(new_id, prior_id, el_from_float(0.9), "supersedes")
+            wt_edge(new_id, prior_id, el_from_float(0.9), "supersedes")
         }
         return "{\"id\":\"" + new_id + "\",\"supersedes\":\"" + prior_id + "\",\"ok\":true,\"cultivated\":true}"
     }
@@ -938,11 +855,11 @@ fn handle_api_cultivate(body: String) -> String {
             }
         }
         let tags: String = "[\"Memory\",\"evolved\",\"cultivated\"]"
-        let new_id: String = engram_node_full(content, "Memory", "memory:cultivated",
+        let new_id: String = wt_node(content, "Memory", "memory:cultivated",
             sal, sal, el_from_float(0.9),
             "Episodic", tags)
         if !str_eq(prior_id, "") && !str_eq(new_id, "") {
-            engram_connect(new_id, prior_id, el_from_float(0.9), "supersedes")
+            wt_edge(new_id, prior_id, el_from_float(0.9), "supersedes")
         }
         return "{\"id\":\"" + new_id + "\",\"supersedes\":\"" + prior_id + "\",\"ok\":true,\"cultivated\":true}"
     }
@@ -962,7 +879,7 @@ fn handle_api_cultivate(body: String) -> String {
         if str_eq(to_id, "") { return api_err("to_id is required") }
         let relation: String = json_get(body, "relation")
         let eff_relation: String = if str_eq(relation, "") { "associates" } else { relation }
-        engram_connect(from_id, to_id, el_from_float(0.5), eff_relation)
+        wt_edge(from_id, to_id, el_from_float(0.5), eff_relation)
         return "{\"ok\":true,\"from_id\":\"" + from_id + "\",\"to_id\":\"" + to_id + "\",\"relation\":\"" + eff_relation + "\",\"cultivated\":true}"
     }
 
@@ -997,7 +914,7 @@ fn handle_api_consolidate(body: String) -> String {
     if !str_eq(summary, "") {
         let safe_summary: String = str_replace(summary, "\"", "'")
         let tags: String = "[\"SessionSummary\",\"consolidate\"]"
-        let summary_id: String = engram_node_full(
+        let summary_id: String = wt_node(
             "[session-summary] " + safe_summary,
             "SessionSummary", "session:summary",
             el_from_float(0.7), el_from_float(0.7), el_from_float(0.9),
@@ -1009,3 +926,462 @@ fn handle_api_consolidate(body: String) -> String {
     }
     return "{\"ok\":true,\"snapshot\":\"" + snap + "\"}"
 }
+
+// ── Stage 1: structural audit ─────────────────────────────────────────────────
+//
+// WHAT THIS IMPLEMENTS
+//   The CGI provisional, 05-detailed-description.md, "Stage 1: Structural audit
+//   430". Verbatim, the audit module evaluates: the density and typed
+//   distribution of causal edges; the consistency between value nodes and
+//   execution-record neighborhoods; the richness and connectivity of the
+//   self-model; and the authenticity of open-question nodes in the wonder
+//   manifest. It "produces a coherence assessment 432 — NOT A BINARY SCORE but
+//   an annotated characterization of the graph's structural properties".
+//
+//   That last clause is the whole shape of this handler. Every finding carries
+//   its own numbers AND a plain-language note saying what the numbers mean and
+//   how they were obtained. There is no pass/fail, no percentage-of-health, no
+//   composite score, and `"score":null` is emitted explicitly so a downstream
+//   reader cannot mistake its absence for an omission.
+//
+// WHY IT EXISTS NOW, AND WHY THE FIRST FINDING IS THE ONE IT IS
+//   `runStructuralAudit` has been an advertised MCP tool with nothing behind it:
+//   the dispatcher GET'd /session/begin and returned that blob (mcp-wrapper/src/
+//   main.el). Meanwhile the failure the audit would have caught ran silently for
+//   about three weeks — the soul reported 103,089 nodes while the engram, which
+//   OWNS persistence, held ~79,900; a crash discarded the difference. Every boot
+//   reported green throughout, because nothing in the system ever compared the
+//   two sides. So finding 1 is owner-versus-runtime divergence: it is the check
+//   whose absence cost real memory, and it is cheap and exact.
+//
+// WHAT IS DELIBERATELY NOT HERE (stage 1b, see the `deferred` array in the
+// response): value/execution-record consistency and wonder-manifest
+// authenticity. Both need node types that barely exist in this graph today —
+// the response MEASURES those populations and reports the counts as the reason,
+// rather than asserting a deferral without evidence.
+//
+// MEASUREMENT HONESTY: EXACT WHERE CHEAP, SAMPLED WHERE NOT, ALWAYS LABELLED
+//   Counts, edge typing and self-model connectivity are exact. Orphan rate and
+//   dangling-edge rate are SAMPLED, because the engram runtime has no node-id
+//   index — `engram_find_node_index` is a linear scan over every node, so an
+//   exhaustive dangling check is O(nodes x edges) (~2.2e9 string compares at
+//   today's scale, tens of seconds inside one request). The samples are UNIFORM
+//   across the whole population, not head-of-list, and every sampled figure is
+//   emitted with its own `sampled` / `population` fields plus an extrapolation
+//   labelled as such. Raise `?edge_sample=` / `?node_sample=` to the population
+//   size to run either check exhaustively and pay the time. The real fix is an
+//   id index in the runtime; that is the engram repo's, not this handler's.
+
+// audit_pct1 — one-decimal percentage as a bare JSON number, sign-safe.
+// Integer math only: EL has no fixed-precision formatter, and float_to_str
+// would put an unbounded mantissa in the response.
+fn audit_pct1(num: Int, den: Int) -> String {
+    if den <= 0 { return "null" }
+    let neg: Bool = num < 0
+    let a: Int = if neg { 0 - num } else { num }
+    let tenths: Int = (a * 1000) / den
+    let whole: Int = tenths / 10
+    let frac: Int = tenths - (whole * 10)
+    let sign: String = if neg { "-" } else { "" }
+    return sign + int_to_str(whole) + "." + int_to_str(frac)
+}
+
+// audit_finding — the one envelope every finding uses: name, the measurements,
+// and the annotation. Keeping it in one place is what stops the characterization
+// from degenerating into a bag of numbers with no reading attached.
+fn audit_finding(name: String, measured: String, note: String) -> String {
+    return "{\"finding\":\"" + name + "\""
+        + ",\"measured\":{" + measured + "}"
+        + ",\"note\":\"" + api_json_escape(note) + "\"}"
+}
+
+// audit_str_at — read the quoted string value starting at byte `start`.
+// Slices a bounded window rather than the tail of the (multi-MB) edges array, so
+// this is O(window) per call instead of O(remaining input).
+fn audit_str_at(s: String, start: Int, maxlen: Int) -> String {
+    let n: Int = str_len(s)
+    if start < 0 || start >= n { return "" }
+    let end_guess: Int = start + maxlen
+    let stop: Int = if end_guess > n { n } else { end_guess }
+    let win: String = str_slice(s, start, stop)
+    let q: Int = str_index_of(win, "\"")
+    if q < 0 { return "" }
+    return str_slice(win, 0, q)
+}
+
+// audit_rel_count — exact count of edges carrying `rel`, by scanning the emitted
+// edge array for the literal `"relation":"<rel>"`. engram_emit_edge_json writes
+// metadata ESCAPED as a string, so no nested object can contain that literal and
+// the count cannot be inflated by edge payloads.
+fn audit_rel_count(edges: String, rel: String) -> Int {
+    return str_count(edges, "\"relation\":\"" + rel + "\"")
+}
+
+// audit_owner_stats — ask the persistence OWNER for its own counts.
+// Returns "" when there is no HTTP owner configured or the owner is unreachable;
+// both are reported as findings, never as a failure of the audit.
+fn audit_owner_stats(url: String) -> String {
+    if str_eq(url, "") { return "" }
+    return http_get(url + "/api/stats")
+}
+
+// audit_divergence — FINDING 1. Runtime (this soul's in-process graph) versus
+// the persistence owner's own count. Trend is measured against the previous
+// audit recorded in soul state, so a second call answers "is the gap growing?"
+// rather than just restating it.
+fn audit_divergence() -> String {
+    let rt_nodes: Int = engram_node_count()
+    let rt_edges: Int = engram_edge_count()
+    let url: String = wt_engram_url()
+
+    if str_eq(url, "") {
+        return audit_finding("owner_runtime_divergence",
+            "\"runtime_nodes\":" + int_to_str(rt_nodes)
+            + ",\"runtime_edges\":" + int_to_str(rt_edges)
+            + ",\"owner\":\"none\",\"owner_reachable\":false",
+            "No HTTP persistence owner is configured, so this soul IS the owner "
+            + "(file mode) and divergence is not defined. This check only has "
+            + "meaning when ENGRAM_URL points at a separate engram that owns the "
+            + "canonical store.")
+    }
+
+    let stats: String = audit_owner_stats(url)
+    // REACHABILITY IS PROVED BY THE PAYLOAD, NOT BY A NON-EMPTY REPLY.
+    // http_get does not return "" on a connection failure — it returns a JSON
+    // error object ({"error":"Failed to connect to ... Couldn't connect to
+    // server"}). Testing only for "" made a DEAD owner read as reachable with
+    // node_count 0, i.e. the audit would have reported a 100% divergence and
+    // named it as data loss. That false positive is worse than no check at all:
+    // it is precisely the kind of confident wrong answer this route exists to
+    // stop. Require the field the contract promises.
+    let owner_nc_raw: String = json_get_raw(stats, "node_count")
+    if str_eq(stats, "") || str_eq(owner_nc_raw, "") {
+        return audit_finding("owner_runtime_divergence",
+            "\"runtime_nodes\":" + int_to_str(rt_nodes)
+            + ",\"runtime_edges\":" + int_to_str(rt_edges)
+            + ",\"owner\":\"" + api_json_escape(url) + "\",\"owner_reachable\":false"
+            + ",\"owner_reply\":\"" + api_json_escape(api_utf8_trunc(stats, 200)) + "\"",
+            "The persistence owner at " + url + " did not return a node_count "
+            + "from GET /api/stats. Divergence is UNKNOWN, NOT ZERO — an owner "
+            + "that cannot be read is exactly the condition under which the "
+            + "runtime's own count means least, and reporting 0 for the owner "
+            + "would manufacture a total-loss reading out of a network error. "
+            + "Reported as a finding rather than raised as an error so the rest "
+            + "of the audit still returns; the owner's raw reply is in "
+            + "owner_reply.")
+    }
+
+    let ow_nodes: Int = json_get_int(stats, "node_count")
+    let ow_edges: Int = json_get_int(stats, "edge_count")
+    let d_nodes: Int = rt_nodes - ow_nodes
+    let d_edges: Int = rt_edges - ow_edges
+
+    // Trend against the previous audit in this soul's state.
+    let prev_raw: String = state_get("audit_prev_node_delta")
+    let prev: Int = str_to_int(prev_raw)
+    let abs_now: Int = if d_nodes < 0 { 0 - d_nodes } else { d_nodes }
+    let abs_prev: Int = if prev < 0 { 0 - prev } else { prev }
+    let trend: String = if str_eq(prev_raw, "") {
+        "no_prior_audit"
+    } else {
+        if abs_now > abs_prev { "growing" } else {
+            if abs_now < abs_prev { "shrinking" } else { "flat" }
+        }
+    }
+    state_set("audit_prev_node_delta", int_to_str(d_nodes))
+    state_set("audit_prev_ts", int_to_str(time_now()))
+
+    let note_head: String = if d_nodes == 0 {
+        "Runtime and owner agree on node count."
+    } else {
+        "Runtime holds " + int_to_str(d_nodes) + " nodes (" + audit_pct1(d_nodes, rt_nodes)
+        + "% of its own graph) that the persistence owner does not report. Nodes "
+        + "that exist only in runtime memory do not survive a restart."
+    }
+    return audit_finding("owner_runtime_divergence",
+        "\"runtime_nodes\":" + int_to_str(rt_nodes)
+        + ",\"runtime_edges\":" + int_to_str(rt_edges)
+        + ",\"owner\":\"" + api_json_escape(url) + "\",\"owner_reachable\":true"
+        + ",\"owner_nodes\":" + int_to_str(ow_nodes)
+        + ",\"owner_edges\":" + int_to_str(ow_edges)
+        + ",\"node_delta\":" + int_to_str(d_nodes)
+        + ",\"edge_delta\":" + int_to_str(d_edges)
+        + ",\"node_delta_pct_of_runtime\":" + audit_pct1(d_nodes, rt_nodes)
+        + ",\"trend_vs_previous_audit\":\"" + trend + "\""
+        + ",\"previous_node_delta\":" + (if str_eq(prev_raw, "") { "null" } else { int_to_str(prev) }),
+        note_head + " Trend against the previous audit recorded in this soul's "
+        + "state: " + trend + ". This is the comparison whose absence let a "
+        + "~24,000-node loss run for weeks with every boot reporting green.")
+}
+
+// audit_edge_typing — FINDING 2. Density plus the typed distribution the patent
+// asks for, against the claim-10 relation vocabulary. Exact: str_count over the
+// emitted edge array, one linear pass per relation.
+fn audit_edge_typing(edges: String, total_edges: Int, node_total: Int) -> String {
+    let c_sup: Int = audit_rel_count(edges, "Supersedes")
+    let c_cau: Int = audit_rel_count(edges, "Causes")
+    let c_con: Int = audit_rel_count(edges, "Contains")
+    let c_ref: Int = audit_rel_count(edges, "References")
+    let c_ctr: Int = audit_rel_count(edges, "Contradicts")
+    let c_exe: Int = audit_rel_count(edges, "Exemplifies")
+    let c_act: Int = audit_rel_count(edges, "Activates")
+    let c_tmp: Int = audit_rel_count(edges, "TemporallyPrecedes")
+    let typed: Int = c_sup + c_cau + c_con + c_ref + c_ctr + c_exe + c_act + c_tmp
+
+    // Lowercase near-misses: the same eight concepts written by the ad-hoc write
+    // paths (linkEntities defaults to "associates", linkCausal to "causes").
+    // Counted separately because "the vocabulary is unused" and "the vocabulary
+    // is used in the wrong case" are different defects with different fixes.
+    let l_sup: Int = audit_rel_count(edges, "supersedes")
+    let l_cau: Int = audit_rel_count(edges, "causes")
+    let l_con: Int = audit_rel_count(edges, "contains")
+    let l_ref: Int = audit_rel_count(edges, "references")
+    let l_ctr: Int = audit_rel_count(edges, "contradicts")
+    let l_exe: Int = audit_rel_count(edges, "exemplifies")
+    let l_act: Int = audit_rel_count(edges, "activates")
+    let l_tmp: Int = audit_rel_count(edges, "temporallyPrecedes")
+    let near: Int = l_sup + l_cau + l_con + l_ref + l_ctr + l_exe + l_act + l_tmp
+
+    let untyped: Int = total_edges - typed
+    return audit_finding("typed_edge_distribution",
+        "\"total_edges\":" + int_to_str(total_edges)
+        + ",\"total_nodes\":" + int_to_str(node_total)
+        // Density per 100 nodes, not per node: EL has no fixed-precision float
+        // formatter, and "0.3 edges per node" rounded to an integer is a lie.
+        + ",\"edges_per_100_nodes\":" + audit_pct1(total_edges, node_total)
+        + ",\"claim10_typed\":" + int_to_str(typed)
+        + ",\"claim10_typed_pct\":" + audit_pct1(typed, total_edges)
+        + ",\"outside_claim10_vocabulary\":" + int_to_str(untyped)
+        + ",\"lowercase_near_miss\":" + int_to_str(near)
+        + ",\"by_relation\":{"
+        + "\"Supersedes\":" + int_to_str(c_sup)
+        + ",\"Causes\":" + int_to_str(c_cau)
+        + ",\"Contains\":" + int_to_str(c_con)
+        + ",\"References\":" + int_to_str(c_ref)
+        + ",\"Contradicts\":" + int_to_str(c_ctr)
+        + ",\"Exemplifies\":" + int_to_str(c_exe)
+        + ",\"Activates\":" + int_to_str(c_act)
+        + ",\"TemporallyPrecedes\":" + int_to_str(c_tmp) + "}",
+        "Only " + int_to_str(typed) + " of " + int_to_str(total_edges)
+        + " edges use the claim-10 causal vocabulary; the remainder are ad-hoc "
+        + "relation strings, which is why the graph's causal claims cannot yet "
+        + "be checked for internal consistency — an untyped edge asserts "
+        + "association, not causation. " + int_to_str(near) + " edges use a "
+        + "lowercase spelling of a claim-10 relation: those are near-misses the "
+        + "write paths could be corrected to emit, not genuinely foreign types.")
+}
+
+// audit_orphans_dangling — FINDING 3. Both figures are SAMPLED; see the header
+// for why exhaustive is O(nodes x edges) on this runtime.
+//
+// An "orphan" here is a node with zero RESOLVABLE edges: engram_neighbors_json
+// drops any edge whose other endpoint does not resolve to a node, so a node
+// whose only edges are dangling reads as an orphan. That is the right reading —
+// such a node is unreachable by traversal — but it is stated rather than hidden.
+fn audit_orphans_dangling(edges: String, total_edges: Int, node_total: Int,
+                          edge_cap: Int, node_cap: Int) -> String {
+    // ── orphan sample: uniform stride over the node store ──
+    let n_take: Int = if node_total < node_cap { node_total } else { node_cap }
+    let n_stride: Int = if n_take > 0 { node_total / n_take } else { 1 }
+    let n_stride = if n_stride < 1 { 1 } else { n_stride }
+    let orphans: Int = 0
+    let n_checked: Int = 0
+    let j: Int = 0
+    while j < n_take {
+        let one: String = engram_scan_nodes_json(1, j * n_stride)
+        let nid: String = json_get(json_array_get(one, 0), "id")
+        if !str_eq(nid, "") {
+            let nbrs: String = engram_neighbors_json(nid, 1, "both")
+            let deg: Int = json_array_len(nbrs)
+            let orphans = if deg == 0 { orphans + 1 } else { orphans }
+            let n_checked = n_checked + 1
+        }
+        let j = j + 1
+    }
+
+    // ── dangling sample: uniform stride over the edge array ──
+    // str_index_of_all gives every edge's field offsets in ONE linear pass, so
+    // any index can be read in O(1). json_array_get would have been O(i) per
+    // element and O(n^2) over the array.
+    let from_pos: [Int] = str_index_of_all(edges, "\"from_id\":\"")
+    let to_pos: [Int] = str_index_of_all(edges, "\"to_id\":\"")
+    let nf: Int = len(from_pos)
+    let nt: Int = len(to_pos)
+    let ne: Int = if nf < nt { nf } else { nt }
+    let e_take: Int = if ne < edge_cap { ne } else { edge_cap }
+    let e_stride: Int = if e_take > 0 { ne / e_take } else { 1 }
+    let e_stride = if e_stride < 1 { 1 } else { e_stride }
+    let dangling: Int = 0
+    let e_checked: Int = 0
+    let i: Int = 0
+    while i < ne && e_checked < e_take {
+        let fid: String = audit_str_at(edges, get(from_pos, i) + 11, 96)
+        let tid: String = audit_str_at(edges, get(to_pos, i) + 9, 96)
+        let f_gone: Bool = str_eq(engram_get_node_json(fid), "{}")
+        let t_gone: Bool = if f_gone { true } else { str_eq(engram_get_node_json(tid), "{}") }
+        let dangling = if f_gone || t_gone { dangling + 1 } else { dangling }
+        let e_checked = e_checked + 1
+        let i = i + e_stride
+    }
+
+    let orphan_est: Int = if n_checked > 0 { (orphans * node_total) / n_checked } else { 0 }
+    let dangle_est: Int = if e_checked > 0 { (dangling * total_edges) / e_checked } else { 0 }
+    let exhaustive_n: String = if n_checked >= node_total { "true" } else { "false" }
+    let exhaustive_e: String = if e_checked >= ne { "true" } else { "false" }
+
+    return audit_finding("orphans_and_dangling_edges",
+        "\"nodes_population\":" + int_to_str(node_total)
+        + ",\"nodes_sampled\":" + int_to_str(n_checked)
+        + ",\"nodes_sample_exhaustive\":" + exhaustive_n
+        + ",\"orphans_in_sample\":" + int_to_str(orphans)
+        + ",\"orphan_rate_pct\":" + audit_pct1(orphans, n_checked)
+        + ",\"orphans_extrapolated\":" + int_to_str(orphan_est)
+        + ",\"edges_population\":" + int_to_str(total_edges)
+        + ",\"edges_sampled\":" + int_to_str(e_checked)
+        + ",\"edges_sample_exhaustive\":" + exhaustive_e
+        + ",\"dangling_in_sample\":" + int_to_str(dangling)
+        + ",\"dangling_rate_pct\":" + audit_pct1(dangling, e_checked)
+        + ",\"dangling_extrapolated\":" + int_to_str(dangle_est),
+        "Orphan = zero RESOLVABLE edges, so a node whose only edges dangle counts "
+        + "as an orphan; either way it is unreachable by traversal. Dangling = an "
+        + "edge with an endpoint id that resolves to no node. Both are uniform "
+        + "stride samples over the whole population, not the head of the list; "
+        + "the extrapolations are estimates and are labelled as such. Pass "
+        + "?node_sample= / ?edge_sample= at or above the population size to run "
+        + "either check exhaustively. A high orphan rate is a characterization, "
+        + "not a verdict: an accumulating store legitimately holds unlinked "
+        + "material. It becomes a defect when the write paths were SUPPOSED to "
+        + "link and did not.")
+}
+
+// audit_pillar — one self-model pillar: present, how much content, how connected.
+fn audit_pillar(key: String, id: String) -> String {
+    let node: String = engram_get_node_json(id)
+    let present: Bool = !str_eq(node, "{}") && !str_eq(node, "")
+    if !present {
+        return "\"" + key + "\":{\"id\":\"" + id + "\",\"present\":false"
+            + ",\"content_length\":0,\"degree\":0}"
+    }
+    let content: String = json_get(node, "content")
+    let deg: Int = json_array_len(engram_neighbors_json(id, 1, "both"))
+    return "\"" + key + "\":{\"id\":\"" + id + "\",\"present\":true"
+        + ",\"label\":\"" + api_json_escape(json_get(node, "label")) + "\""
+        + ",\"tier\":\"" + api_json_escape(json_get(node, "tier")) + "\""
+        + ",\"content_length\":" + int_to_str(str_len(content))
+        + ",\"degree\":" + int_to_str(deg) + "}"
+}
+
+// audit_self_model — FINDING 4. "the richness and connectivity of the
+// self-model ... is it connected to behavioral evidence?"
+//
+// This finding RETIRES the Claude-side vitals identity block. That check lived
+// outside the system it was checking — a shell script grepping a snapshot — so
+// it could only ever report on a file, and it went on reporting green while the
+// memory-philosophy pillar was absent from the live graph for about three weeks.
+// Asking the running soul about its own three pillars is the designed mechanism;
+// a shell probe was the fourth patch on the same hole.
+fn audit_self_model() -> String {
+    let dna: String = audit_pillar("intellectual_dna", "kn-5adecd7e-d6db-4576-87fe-6ef8a935cea6")
+    let val: String = audit_pillar("values_hub", "kn-5b606390-a52d-4ca2-8e0e-eba141d13440")
+    let phi: String = audit_pillar("memory_philosophy", "kn-dcfe04b3-3702-4cac-b6f0-ecb4db837eee")
+    let root: String = audit_pillar("self_root", "kn-efeb4a5b-5aff-4759-8a97-7233099be6ee")
+    return audit_finding("self_model_connectivity",
+        "\"pillars\":{" + dna + "," + val + "," + phi + "," + root + "}",
+        "The three identity pillars plus the self root. `degree` counts nodes "
+        + "reachable in one hop in either direction — the self-model's connection "
+        + "to the rest of the graph. present:false on any pillar is the condition "
+        + "that ran undetected for weeks; content_length distinguishes a pillar "
+        + "that is present from one that is present but hollowed out. The patent "
+        + "also asks whether the self-model makes ACCURATE PREDICTIONS about the "
+        + "system's own behavior; that half needs Prediction nodes and is deferred "
+        + "with the rest of stage 1b below.")
+}
+
+// audit_deferred — what stage 1 does NOT yet evaluate, with the measured reason.
+// Emitted as data, not as a comment, so a reader of the assessment sees the gap
+// and its evidence rather than inferring completeness from silence.
+fn audit_deferred() -> String {
+    let preds: Int = json_array_len(api_or_empty(engram_scan_nodes_by_type_json("Prediction", 50, 0)))
+    let wonders: Int = json_array_len(api_or_empty(engram_scan_nodes_by_type_json("WonderQuestion", 50, 0)))
+    return "[{\"deferred\":\"value_execution_record_consistency\""
+        + ",\"stage\":\"1b\""
+        + ",\"measured\":{\"prediction_nodes_found\":" + int_to_str(preds) + "}"
+        + ",\"reason\":\"" + api_json_escape(
+            "The patent asks whether the execution history SUPPORTS the stated "
+            + "values or shows systematic conflict. That requires execution "
+            + "records tied to value nodes and predictions to score them against. "
+            + "Prediction nodes found (capped at 50): " + int_to_str(preds)
+            + ". Asserting value/execution coherence on that population would be "
+            + "a fabricated result, which is worse than a stated gap.") + "\"}"
+        + ",{\"deferred\":\"wonder_manifest_authenticity\""
+        + ",\"stage\":\"1b\""
+        + ",\"measured\":{\"wonder_question_nodes_found\":" + int_to_str(wonders) + "}"
+        + ",\"reason\":\"" + api_json_escape(
+            "The patent asks whether pull weights CORRELATE WITH GENUINE "
+            + "PREDICTION UNCERTAINTY or are uniform/externally assigned — a "
+            + "correlation between two populations. WonderQuestion nodes readable "
+            + "by type (capped at 50): " + int_to_str(wonders) + ", against "
+            + int_to_str(preds) + " Prediction nodes. There is a known write/read "
+            + "node-type mismatch on the wonder path; until that is fixed and both "
+            + "populations exist, any correlation reported here would be noise.") + "\"}]"
+}
+
+// handle_api_structural_audit — Stage 1. Returns the coherence assessment 432:
+// an annotated characterization, explicitly NOT a score.
+//
+// COST NOTE: the edge findings need the relation labels, and the runtime exposes
+// no edge-enumeration builtin. The only way to see them is the same one
+// GET /api/graph/edges already uses — engram_save to a SCRATCH path (never the
+// owner's canonical file; see routes.el, neuron#117) and read the array back.
+// On a large graph that is a multi-hundred-MB write, so this is a manual audit
+// route, not something to put on a timer. Pass ?edges=0 to skip both edge
+// findings and get the divergence + self-model readings cheaply.
+fn handle_api_structural_audit(method: String, path: String, body: String) -> String {
+    let node_total: Int = engram_node_count()
+    let edge_total: Int = engram_edge_count()
+    let want_edges: Bool = !str_eq(api_query_param(path, "edges"), "0")
+    let edge_cap: Int = api_query_int(path, "edge_sample", 3000)
+    let node_cap: Int = api_query_int(path, "node_sample", 300)
+
+    let divergence: String = audit_divergence()
+    let self_model: String = audit_self_model()
+
+    let edge_part: String = if want_edges {
+        // Scratch export only. state_get("soul_snapshot_path") is deliberately
+        // NOT used: in HTTP-engram mode the soul is not the persistence owner and
+        // must never write the canonical file, not even on a read path.
+        let scratch_dir: String = env("TMPDIR")
+        let scratch_base: String = if str_eq(scratch_dir, "") { "/tmp" } else { scratch_dir }
+        let snap_path: String = scratch_base + "/soul-audit-export-" + state_get("soul_cgi_id") + ".json"
+        // engram_save returns Int (1 ok / 0 fail); str_eq on it SIGSEGVs (#150).
+        let saved: Int = engram_save(snap_path)
+        if saved == 0 {
+            "," + audit_finding("typed_edge_distribution", "\"available\":false",
+                "Could not export the graph to " + snap_path + " for edge analysis, "
+                + "so edge typing and the dangling-edge sample were not run. "
+                + "Reported as a gap, not as zero findings.")
+        } else {
+            // wt_read, not fs_read: fs_read leaves a thread-local length hint that
+            // the NEXT HTTP response would use as its Content-Length, appending
+            // adjacent heap bytes to the reply (see persist.el wt_read).
+            let snap: String = wt_read(snap_path)
+            let edges_raw: String = json_get_raw(snap, "edges")
+            let edges: String = if str_eq(edges_raw, "") { "[]" } else { edges_raw }
+            "," + audit_edge_typing(edges, edge_total, node_total)
+            + "," + audit_orphans_dangling(edges, edge_total, node_total, edge_cap, node_cap)
+        }
+    } else {
+        ""
+    }
+
+    return "{\"audit\":\"structural\",\"stage\":1"
+        + ",\"spec\":\"CGI provisional 05-detailed-description.md, Stage 1: Structural audit 430\""
+        + ",\"assessment\":\"coherence_assessment_432\""
+        + ",\"assessment_kind\":\"annotated_characterization\""
+        + ",\"score\":null"
+        + ",\"score_note\":\"By design. The specification calls for an annotated characterization of the graph's structural properties, not a binary score. Read the findings.\""
+        + ",\"cgi_id\":\"" + api_json_escape(state_get("soul_cgi_id")) + "\""
+        + ",\"ts_ms\":" + int_to_str(time_now())
+        + ",\"findings\":[" + divergence + "," + self_model + edge_part + "]"
+        + ",\"deferred\":" + audit_deferred() + "}"
+}

neuron-api.elh

@@ -8,22 +8,8 @@ extern fn api_ok(extra: String) -> String
 extern fn api_err(msg: String) -> String
 extern fn api_nonempty(s: String) -> Bool
 extern fn api_or_empty(s: String) -> String
-extern fn api_num_or_zero(obj: String, key: String) -> String
-extern fn api_utf8_trunc(s: String, n: Int) -> String
-extern fn api_compact_node(node: String, snip: Int) -> String
-extern fn api_compact_node_array(raw: String, max_items: Int, snip: Int) -> String
-extern fn api_compact_activated(raw: String, max_items: Int, snip: Int) -> String
-extern fn api_float_or(obj: String, key: String, dflt: Float) -> Float
-extern fn api_neigh_better(a: String, b: String) -> Bool
-extern fn api_neigh_rank(raw: String, n: Int, i: Int) -> Int
-extern fn api_neigh_full(node: String, edge: String, el: String, snip: Int) -> String
-extern fn api_neigh_pointer(node: String, edge: String, el: String) -> String
-extern fn api_compact_neighbors(raw: String, k_content: Int, snip: Int) -> String
 extern fn api_persisted(id: String) -> Bool
 extern fn api_not_persisted(id: String) -> String
-extern fn tombstone_node(id: String) -> String
-extern fn tombstoned_id_set() -> String
-extern fn memory_hide_tombstoned(raw: String, path: String) -> String
 extern fn handle_api_begin_session(body: String) -> String
 extern fn handle_api_compile_ctx(body: String) -> String
 extern fn handle_api_remember(body: String) -> String
@@ -51,3 +37,4 @@ extern fn handle_api_memory_update(body: String) -> String
 extern fn handle_api_cultivate(body: String) -> String
 extern fn handle_api_list_typed(node_type: String, path: String, body: String) -> String
 extern fn handle_api_consolidate(body: String) -> String
+extern fn handle_api_structural_audit(method: String, path: String, body: String) -> String

neuron-dev-setup/README.md

@@ -0,0 +1,171 @@
+# neuron-dev-setup — one-command Neuron CORE dev stack
+
+Stand up an identical **Neuron brain + agent** on a fresh Mac so any developer
+gets the same local runtime to build against. This is the **CORE** dev stack
+only — the four native `launchd` services that make Neuron think, remember, and
+speak MCP to Claude Code. Will's personal automations (catalyst, telegram,
+vessels, studio, self-review, world-integrator, council, compressor, snapshots,
+act-runner, …) are **deliberately excluded**.
+
+```
+  ┌─────────────┐        ┌──────────────┐
+  │  soul :7770 │ ─────► │ engram :8742 │     the mind ──► its memory substrate
+  └─────────────┘        └──────────────┘
+        ▲
+        │
+  ┌───────────────────┐
+  │ mcp-wrapper :17779│  ─── MCP surface over the soul HTTP API (internal)
+  └───────────────────┘
+        ▲
+        │
+  ┌────────────────┐
+  │ mcp-proxy :7779│  ◄─── Claude Code connects here (stable front door)
+  └────────────────┘
+```
+
+Claude Code's `neuron` MCP server points at `http://127.0.0.1:7779/` — the proxy.
+The proxy forwards to the wrapper (`:17779`), which calls the soul (`:7770`),
+which reads/writes the engram (`:8742`). The engram is the persistent brain.
+
+## Quick start
+
+```bash
+git clone <this-repo> && cd neuron-dev-setup
+cp config.env.example config.env      # optional — edit ports/paths if you like
+./install.sh                          # prompts for your Anthropic API key
+```
+
+Then verify:
+
+```bash
+curl http://localhost:8742/health     # engram
+curl http://localhost:7770/health         # soul
+curl http://localhost:7779/health         # mcp-proxy (what Claude Code uses)
+launchctl list | grep ai.neuron
+```
+
+Open Claude Code — the `neuron` MCP tools should be live, backed by **your own**
+local brain. `./install.sh --dry-run` shows every action without touching anything.
+
+## What the installer does (8 phases)
+
+| Phase | Action |
+|------|--------|
+| 1 | Preflight: macOS/arm64, ensure `git cc curl python3` + `openssl@3` (via Homebrew) |
+| 2 | Prompt for the **Anthropic API key**, store it in the **macOS Keychain** (never a file) |
+| 3 | Clone `neuron`, `engram`, `foundation`; fetch the El toolchain; build 4 binaries + `forge` |
+| 4 | Lay down `~/.neuron/{bin,logs,engram}` and the templated `soul-wrapper.sh` |
+| 5 | Generate + load the 4 core LaunchAgents (engram → soul → wrapper → proxy) |
+| 6 | Seed a fresh engram with the **genesis identity** via `forge install` |
+| 7 | Install Claude config: `neuron` agent, core hooks, local MCP registration |
+| 8 | Health-check all four ports |
+
+Everything is **idempotent** (safe to re-run) and **templated** to the invoking
+user's `$HOME` — no path is hardcoded to another machine.
+
+## Prerequisites
+
+- macOS on Apple Silicon (uses `launchd`; soul build flags assume arm64).
+- **Xcode Command Line Tools** (`xcode-select --install`) — provides `cc`, `git`.
+- **Homebrew** — for `openssl@3`, `curl`.
+- An **Anthropic API key** — the soul's inference provider. Prompted for; stored
+  in Keychain under service `neuron-llm-0-key`; read at launch by `soul-wrapper.sh`.
+- **Git access** to Gitea (`git.neuralplatform.ai`) for the source repos.
+- **GCP access** to project `neuron-785695` Artifact Registry (default El
+  toolchain source). Ask Will to grant it, or set `EL_TOOLCHAIN_SOURCE=local`.
+
+## Core-stack map (what gets replicated)
+
+| Service | Port | Binary | Built from | LaunchAgent |
+|---------|------|--------|------------|-------------|
+| soul | 7770 | `neuron/dist/neuron` | `dist/soul.c` + El runtime, `cc` (CI recipe) | `ai.neuron.soul` |
+| engram | 8742 | `engram/dist/engram` | `engram` repo `src/server.el` via `elc`→`cc` | `ai.neuron.engram` |
+| mcp-wrapper | 17779 | `neuron/mcp-wrapper/dist/neuron-mcp-wrapper` | `mcp-wrapper/src/main.el` | `ai.neuron.mcp-wrapper` |
+| mcp-proxy | 7779 | `neuron/mcp-proxy/dist/neuron-mcp-proxy` | `mcp-proxy/src/main.el` | `ai.neuron.mcp-proxy` |
+
+**`~/.neuron` layout the installer creates**
+
+```
+~/.neuron/
+  bin/soul-wrapper.sh     # reads Anthropic key from Keychain, execs the soul binary
+  logs/                   # soul.*.log, engram.log, mcp-*.log
+  engram/                 # ENGRAM_DATA_DIR — the persistent brain (snapshot.json + db)
+```
+
+**Identity seed.** `foundation/forge/seeds/neuron-genesis-seed.json` carries
+`identity_nodes[]` + `edges[]` with **fixed** knowledge-node IDs (e.g.
+`kn-efeb4a5b-5aff-4759-8a97-7233099be6ee`, the "self" traversal root). Those exact
+IDs are referenced by the SessionStart self-load hook and the neuron agent, so
+seeding must **preserve IDs** — `forge install <seed>` is the mechanism.
+
+**Claude config installed** (`~/.claude/`)
+
+- `agents/neuron.md` — the Neuron agent (identity, session protocol, five primitives).
+- `mcp.json` — registers `neuron` → `http://127.0.0.1:7779/`.
+- `settings.json` hooks (CORE subset only):
+  - `SessionStart` → `neuron-self-load.sh` (loads identity from the seeded engram)
+  - `PreToolUse:Agent` → `neuron-agent-preamble.sh` (subagents load substrate first)
+  - `PreCompact` → `pre-compact.sh` (clean context recovery)
+
+### Deliberately EXCLUDED from core
+
+- **`check-active-contexts.sh`** and **`require-execution-context.sh`** — these
+  depend on a separate filesystem repo `~/Development/projects/active/neuron/synapse`.
+  `require-execution-context.sh` is a hard `Edit/Write` gate that would **block a
+  fresh dev from editing any file** without that synapse repo. Not core; excluded.
+- `engram-mirror.py` (PostToolUse) — optional; mirrors MCP writes to engram.
+- All Will-personal LaunchAgents: `catalyst-*`, `telegram-gateway`, `vessel.*`,
+  `studio`, `self-review`, `world-integrator`, `council`, `compressor`,
+  `cultivation-digest`, `snapshot-backup`, `engram-backup`, `act-runner`, `keymap`,
+  `invest`, and the disabled `ai.neuron.api` (`:7771` is a personal Python
+  perception helper — confirmed not core).
+
+## Secrets — how they're handled
+
+- **Anthropic key**: prompted for; stored in Keychain; read at launch. Never in a
+  plist, this repo, or a log.
+- **Engram local token** (`ENGRAM_API_KEY`): a *loopback-only* dev token, not a
+  cloud secret. Defaults to a generated `ntn-dev-*` value; override in `config.env`.
+- No cloud tokens, Vault tokens, CF-Access secrets, or founder keys are copied.
+  (Will's live `start-daemon.sh`/`neuron-api-launch.sh` contain such keys — this
+  installer intentionally does **not** use those files.)
+
+## Uninstall
+
+```bash
+./uninstall.sh                # stop + remove the 4 LaunchAgents and added Claude hooks
+./uninstall.sh --purge-data   # ALSO delete ~/.neuron/engram (destroys the brain)
+```
+
+## OPEN QUESTIONS (need Will to confirm)
+
+1. **El toolchain acquisition.** The default path fetches `el-runtime-c/-h` and
+   `el-elc` from GCP Artifact Registry (mirrors `neuron/.gitea/workflows/ci.yaml`).
+   A new dev needs GCP access to `neuron-785695`. Is that the intended path, or
+   should the El SDK be published/vendored for onboarding?
+2. **`elc` invocation for engram/wrapper/proxy.** The soul build (`cc dist/soul.c
+   + el_runtime.c`) is verified from CI. The `.el → .c` transpile step for engram,
+   mcp-wrapper, and mcp-proxy is inferred (`elc <src> -o <out.c>`). Confirm the
+   exact flags / entrypoints (CI notes `elb` OOMs on Linux; macOS builds differ).
+3. **`forge install` ID preservation.** Confirm `forge install` writes the seed's
+   fixed `kn-` IDs verbatim (the self-load hook hardcodes `kn-efeb4a5b…`). If it
+   re-mints IDs, the hook + agent identity load would break on a fresh brain.
+4. **engram repo layout.** The live engram binary is built from `src/server.el`
+   (Gitea repo `neuron-technologies/engram`, cloned in CI). Confirm that repo is
+   the canonical source for onboarding (the local `foundation/el/engram` copy has
+   the same `src/server.el`).
+5. **Home for this bundle** — see below.
+
+## Where this should live (recommendation)
+
+**Recommendation: a dedicated `neuron-dev-setup` (or `neuron-onboarding`) repo —
+NOT `neuron-code`.** `neuron-code` already exists as a real product ("Neuron Code",
+a coding tool with `nc-cli` + vessels — local `products/neuron-code` has commits);
+repurposing it for onboarding would collide with a shipped product's identity.
+
+This bundle was scaffolded as `neuron-dev-setup/` on branch `feat/neuron-dev-setup`
+in the **`neuron` repo** (off `origin/main`) and opened as a PR for review, because
+the neuron repo already hosts the soul source, the verified CI build recipe, and
+the mcp-wrapper/proxy sources — the natural review surface. If you'd rather it be
+its own repo, move this directory into a fresh `neuron-dev-setup` repo verbatim;
+nothing here depends on living inside the neuron repo.

neuron-dev-setup/config.env.example

@@ -0,0 +1,45 @@
+# neuron-dev-setup — configuration
+# Copy to  config.env  and edit if you want non-default paths/ports.
+# install.sh sources this file if it exists; otherwise it uses these defaults.
+# NOTHING here is a secret. The Anthropic API key is read from your Keychain,
+# never from this file. See README.md.
+
+# ── Where the core stack lives ────────────────────────────────────────────────
+# All paths are relative to your own $HOME — never hardcode another user's home.
+NEURON_HOME="${HOME}/.neuron"                       # runtime home: bin/, logs/, engram data
+DEV_ROOT="${HOME}/Development/neuron-technologies"   # where source repos are cloned/built
+
+# ── Git remotes (Gitea is primary) ───────────────────────────────────────────
+GITEA_BASE="git@git.neuralplatform.ai:neuron-technologies"
+NEURON_REPO_URL="${GITEA_BASE}/neuron.git"          # soul + mcp-wrapper + mcp-proxy source
+ENGRAM_REPO_URL="${GITEA_BASE}/engram.git"          # engram memory substrate
+# NOTE: there is no foundation.git repo. The El toolchain is fetched via
+# EL_TOOLCHAIN_SOURCE below; the forge seed installer is optional (Phase 6).
+NEURON_REPO_BRANCH="main"
+
+# ── Ports (must match across services; change only if a port clashes) ─────────
+SOUL_PORT="7770"        # soul daemon HTTP API
+ENGRAM_PORT="8742"      # engram memory substrate
+WRAPPER_PORT="17779"    # mcp-wrapper (internal, talks to soul)
+PROXY_PORT="7779"       # mcp-proxy (stable front door Claude Code connects to)
+
+# ── Engram ────────────────────────────────────────────────────────────────────
+ENGRAM_DATA_DIR="${NEURON_HOME}/engram"
+# Local shared auth token for the engram/soul HTTP APIs on loopback. This is a
+# LOCAL dev token (not a cloud secret); override it if you like. install.sh will
+# generate a random one if you leave it empty.
+ENGRAM_API_KEY="ntn-dev-local"
+
+# ── El toolchain source (needed to build engram / mcp-wrapper / mcp-proxy) ────
+# Option A (default): fetch prebuilt El runtime + elc from GCP Artifact Registry
+#   (requires `gcloud auth` with access to project neuron-785695 — ask Will).
+#   Without gcloud the installer skips the El-dependent builds and still completes.
+# Option B: use a prebuilt El toolchain (elc + el_runtime.{c,h}) you have already
+#   staged in ${DEV_ROOT}/.el-runtime.
+EL_TOOLCHAIN_SOURCE="artifact-registry"   # artifact-registry | local
+GCP_PROJECT="neuron-785695"
+GCP_AR_REPO="foundation-prod"
+GCP_AR_LOCATION="us-central1"
+
+# ── Keychain service name for the Anthropic key (read by soul-wrapper.sh) ─────
+KEYCHAIN_SERVICE="neuron-llm-0-key"

neuron-dev-setup/install.sh

@@ -0,0 +1,441 @@
+#!/usr/bin/env bash
+#
+# neuron-dev-setup / install.sh
+# ─────────────────────────────────────────────────────────────────────────────
+# One-command onboarding for the Neuron CORE dev stack on a fresh Mac.
+#
+# Stands up, as native launchd services, the four processes a developer needs to
+# have an identical "Neuron brain + agent" to build against:
+#
+#     soul  (:7770)  ──►  engram (:8742)        the mind + its memory substrate
+#       ▲                     ▲
+#       │                     │
+#   mcp-wrapper (:17779) ──►  soul              MCP surface over the soul API
+#       ▲
+#       │
+#   mcp-proxy   (:7779)  ◄── Claude Code        stable MCP front door
+#
+# It also seeds a fresh engram with Neuron's identity (the genesis seed) and lays
+# down the Claude Code config (neuron agent + core hooks + local MCP registration)
+# so a new dev's `claude` talks to *their own* local Neuron.
+#
+# DESIGN RULES
+#   * Idempotent: safe to re-run. Existing state is detected and reused.
+#   * Templated: every path/port/user is derived from $HOME and config.env.
+#     Nothing is hardcoded to another developer's machine.
+#   * Secret-free: the Anthropic key is prompted for and stored in the macOS
+#     Keychain. No key is ever written to a plist, this repo, or a logfile.
+#
+# USAGE
+#   ./install.sh                 # full install
+#   ./install.sh --dry-run       # print what would happen, touch nothing
+#   ./install.sh --skip-build    # assume binaries already built (see --use-local)
+#   ./install.sh --skip-services # lay down files but don't load LaunchAgents
+#   ./install.sh --help
+# ─────────────────────────────────────────────────────────────────────────────
+set -euo pipefail
+
+# ── Locate ourselves ─────────────────────────────────────────────────────────
+SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+TEMPLATES="${SCRIPT_DIR}/templates"
+
+# ── Flags ────────────────────────────────────────────────────────────────────
+DRY_RUN=0; SKIP_BUILD=0; SKIP_SERVICES=0; USE_LOCAL_BINARIES=0
+for arg in "$@"; do
+  case "$arg" in
+    --dry-run)       DRY_RUN=1 ;;
+    --skip-build)    SKIP_BUILD=1 ;;
+    --skip-services) SKIP_SERVICES=1 ;;
+    --use-local)     USE_LOCAL_BINARIES=1 ;;
+    --help|-h)
+      sed -n '2,40p' "${BASH_SOURCE[0]}" | sed 's/^# \{0,1\}//'
+      exit 0 ;;
+    *) echo "unknown flag: $arg" >&2; exit 2 ;;
+  esac
+done
+
+# ── Pretty logging ───────────────────────────────────────────────────────────
+c_blue=$'\033[1;34m'; c_grn=$'\033[1;32m'; c_yel=$'\033[1;33m'; c_red=$'\033[1;31m'; c_off=$'\033[0m'
+step() { echo "${c_blue}▶${c_off} $*"; }
+ok()   { echo "${c_grn}✓${c_off} $*"; }
+warn() { echo "${c_yel}!${c_off} $*"; }
+die()  { echo "${c_red}✗ $*${c_off}" >&2; exit 1; }
+run()  { if [ "$DRY_RUN" = 1 ]; then echo "   [dry-run] $*"; else eval "$*"; fi; }
+
+# ── Load config ──────────────────────────────────────────────────────────────
+if [ -f "${SCRIPT_DIR}/config.env" ]; then
+  # shellcheck disable=SC1091
+  source "${SCRIPT_DIR}/config.env"
+else
+  # shellcheck disable=SC1091
+  source "${SCRIPT_DIR}/config.env.example"
+  warn "No config.env found — using defaults from config.env.example."
+fi
+
+# Derived / defaulted values (never hardcode a home directory)
+: "${NEURON_HOME:=${HOME}/.neuron}"
+: "${DEV_ROOT:=${HOME}/Development/neuron-technologies}"
+: "${SOUL_PORT:=7770}"; : "${ENGRAM_PORT:=8742}"; : "${WRAPPER_PORT:=17779}"; : "${PROXY_PORT:=7779}"
+: "${ENGRAM_DATA_DIR:=${NEURON_HOME}/engram}"
+: "${ENGRAM_API_KEY:=}"
+: "${KEYCHAIN_SERVICE:=neuron-llm-0-key}"
+: "${EL_TOOLCHAIN_SOURCE:=artifact-registry}"
+: "${NEURON_REPO_BRANCH:=main}"
+
+NEURON_REPO="${DEV_ROOT}/neuron"
+ENGRAM_REPO="${DEV_ROOT}/engram"
+FOUNDATION_REPO="${DEV_ROOT}/foundation"
+
+SOUL_BIN="${NEURON_REPO}/dist/neuron"
+ENGRAM_BIN="${ENGRAM_REPO}/dist/engram"
+MCP_WRAPPER_BIN="${NEURON_REPO}/mcp-wrapper/dist/neuron-mcp-wrapper"
+MCP_PROXY_BIN="${NEURON_REPO}/mcp-proxy/dist/neuron-mcp-proxy"
+FORGE_BIN="${FOUNDATION_REPO}/forge/dist/forge"
+GENESIS_SEED="${FOUNDATION_REPO}/forge/seeds/neuron-genesis-seed.json"
+
+LAUNCHAGENTS="${HOME}/Library/LaunchAgents"
+CLAUDE_DIR="${HOME}/.claude"
+
+# Generate a local engram token if none was supplied.
+if [ -z "${ENGRAM_API_KEY}" ]; then
+  ENGRAM_API_KEY="ntn-dev-$(head -c8 /dev/urandom | xxd -p 2>/dev/null || echo local)"
+fi
+
+echo
+echo "${c_blue}━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━${c_off}"
+echo "${c_blue}  Neuron CORE dev stack installer${c_off}"
+echo "${c_blue}━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━${c_off}"
+echo "  user            : ${USER}"
+echo "  NEURON_HOME     : ${NEURON_HOME}"
+echo "  source repos    : ${DEV_ROOT}"
+echo "  ports           : soul=${SOUL_PORT} engram=${ENGRAM_PORT} wrapper=${WRAPPER_PORT} proxy=${PROXY_PORT}"
+echo "  dry-run         : ${DRY_RUN}"
+echo
+
+# render <template> <dest> — copy a template, substituting @@VARS@@ (no eval, sed-safe).
+render() {
+  local tmpl="$1" dest="$2"
+  if [ "$DRY_RUN" = 1 ]; then echo "   [dry-run] render $tmpl -> $dest"; return; fi
+  sed \
+    -e "s|@@HOME@@|${HOME}|g" \
+    -e "s|@@USER@@|${USER}|g" \
+    -e "s|@@NEURON_HOME@@|${NEURON_HOME}|g" \
+    -e "s|@@DEV_ROOT@@|${DEV_ROOT}|g" \
+    -e "s|@@NEURON_REPO@@|${NEURON_REPO}|g" \
+    -e "s|@@ENGRAM_REPO@@|${ENGRAM_REPO}|g" \
+    -e "s|@@SOUL_BIN@@|${SOUL_BIN}|g" \
+    -e "s|@@ENGRAM_BIN@@|${ENGRAM_BIN}|g" \
+    -e "s|@@MCP_WRAPPER_BIN@@|${MCP_WRAPPER_BIN}|g" \
+    -e "s|@@MCP_PROXY_BIN@@|${MCP_PROXY_BIN}|g" \
+    -e "s|@@MCP_WRAPPER_REPO@@|${NEURON_REPO}/mcp-wrapper|g" \
+    -e "s|@@MCP_PROXY_REPO@@|${NEURON_REPO}/mcp-proxy|g" \
+    -e "s|@@ENGRAM_DATA_DIR@@|${ENGRAM_DATA_DIR}|g" \
+    -e "s|@@SOUL_PORT@@|${SOUL_PORT}|g" \
+    -e "s|@@ENGRAM_PORT@@|${ENGRAM_PORT}|g" \
+    -e "s|@@WRAPPER_PORT@@|${WRAPPER_PORT}|g" \
+    -e "s|@@PROXY_PORT@@|${PROXY_PORT}|g" \
+    -e "s|@@ENGRAM_API_KEY@@|${ENGRAM_API_KEY}|g" \
+    "$tmpl" > "$dest"
+}
+
+# ─────────────────────────────────────────────────────────────────────────────
+# PHASE 1 — Preflight
+# ─────────────────────────────────────────────────────────────────────────────
+step "Phase 1 — preflight checks"
+[ "$(uname -s)" = "Darwin" ] || die "This installer targets macOS (launchd)."
+[ "$(uname -m)" = "arm64" ]  || warn "Non-arm64 Mac: soul.c build flags assume Apple Silicon; review PHASE 3."
+
+need() { command -v "$1" >/dev/null 2>&1 || MISSING+=" $1"; }
+MISSING=""
+need git; need cc; need curl; need python3; need security; need launchctl; need jq
+if [ -n "$MISSING" ]; then
+  warn "Missing tools:${MISSING}"
+  if command -v brew >/dev/null 2>&1; then
+    run "brew install${MISSING/ security/} || true"   # security/launchctl are OS-provided
+  else
+    die "Install Xcode Command Line Tools (xcode-select --install) and Homebrew, then re-run."
+  fi
+fi
+# Runtime build deps used by the soul cc line (-lssl -lcrypto -lcurl).
+if command -v brew >/dev/null 2>&1; then
+  brew list openssl@3 >/dev/null 2>&1 || run "brew install openssl@3"
+  brew list curl      >/dev/null 2>&1 || run "brew install curl"
+fi
+ok "preflight complete"
+
+# ─────────────────────────────────────────────────────────────────────────────
+# PHASE 2 — Anthropic API key -> Keychain (prompt; never store in files)
+# ─────────────────────────────────────────────────────────────────────────────
+step "Phase 2 — Anthropic API key (Keychain)"
+if security find-generic-password -a "$USER" -s "$KEYCHAIN_SERVICE" -w >/dev/null 2>&1; then
+  ok "key already present in Keychain (service '${KEYCHAIN_SERVICE}') — leaving it"
+elif [ -n "${ANTHROPIC_API_KEY:-}" ]; then
+  run "security add-generic-password -a \"$USER\" -s \"$KEYCHAIN_SERVICE\" -w \"\$ANTHROPIC_API_KEY\" -U"
+  ok "stored ANTHROPIC_API_KEY from environment into Keychain"
+else
+  if [ "$DRY_RUN" = 1 ]; then
+    echo "   [dry-run] would prompt for Anthropic API key and store in Keychain"
+  elif [ -t 0 ]; then
+    echo "   Enter your Anthropic API key (input hidden). Get one at https://console.anthropic.com/"
+    read -r -s -p "   ANTHROPIC_API_KEY: " _key; echo
+    [ -n "$_key" ] || die "No key entered. Re-run when you have one."
+    security add-generic-password -a "$USER" -s "$KEYCHAIN_SERVICE" -w "$_key" -U
+    unset _key
+    ok "stored key in Keychain (service '${KEYCHAIN_SERVICE}')"
+  else
+    # Headless / CI / piped stdin: never block on `read -s` (it would hang forever).
+    die "No Anthropic API key and stdin is not a TTY (headless/CI). Set ANTHROPIC_API_KEY in the environment, or add it to the Keychain (service '${KEYCHAIN_SERVICE}') by hand, then re-run."
+  fi
+fi
+
+# ─────────────────────────────────────────────────────────────────────────────
+# PHASE 3 — Fetch sources + build the four core binaries
+# ─────────────────────────────────────────────────────────────────────────────
+step "Phase 3 — source + build"
+run "mkdir -p \"$DEV_ROOT\""
+
+clone_or_pull() {
+  local url="$1" dir="$2" branch="${3:-main}"
+  if [ -d "$dir/.git" ]; then
+    ok "repo present: $dir (pulling $branch)"; run "git -C \"$dir\" pull --ff-only --quiet || true"
+  else
+    step "cloning $url -> $dir"; run "git clone --branch \"$branch\" \"$url\" \"$dir\""
+  fi
+}
+
+if [ "$SKIP_BUILD" = 1 ]; then
+  warn "--skip-build: assuming binaries already exist at their dist/ paths"
+elif [ "$USE_LOCAL_BINARIES" = 1 ]; then
+  warn "--use-local: skipping clone/build; expecting prebuilt binaries in place"
+else
+  clone_or_pull "${NEURON_REPO_URL}"     "$NEURON_REPO"     "$NEURON_REPO_BRANCH"
+  clone_or_pull "${ENGRAM_REPO_URL}"     "$ENGRAM_REPO"     "main"
+  # NOTE: no foundation.git — that repo does not exist. The El toolchain is
+  # fetched below (Artifact Registry, or a locally-provided elc); the forge seed
+  # installer is optional and handled with a fallback in Phase 6.
+
+  # ── El toolchain (needed to transpile .el -> .c for engram/wrapper/proxy) ──
+  # soul does NOT need this: dist/soul.c is committed and compiled directly.
+  EL_RUNTIME_DIR="${DEV_ROOT}/.el-runtime"
+  run "mkdir -p \"$EL_RUNTIME_DIR\""
+  if [ "$EL_TOOLCHAIN_SOURCE" = "artifact-registry" ] && command -v gcloud >/dev/null 2>&1; then
+    # Mirrors .gitea/workflows/ci.yaml: pull el-runtime-c, el-runtime-h, el-elc.
+    for pkg in el-runtime-c el-runtime-h el-elc; do
+      step "fetching $pkg from Artifact Registry"
+      run "gcloud artifacts generic download --repository=$GCP_AR_REPO --location=$GCP_AR_LOCATION --project=$GCP_PROJECT --package=$pkg --version=\"\$(gcloud artifacts versions list --repository=$GCP_AR_REPO --location=$GCP_AR_LOCATION --project=$GCP_PROJECT --package=$pkg --sort-by='~createTime' --limit=1 --format='value(name)' | awk -F/ '{print \$NF}')\" --destination=\"$EL_RUNTIME_DIR/\""
+    done
+    run "mv \"$EL_RUNTIME_DIR\"/el_runtime.c* \"$EL_RUNTIME_DIR/el_runtime.c\" 2>/dev/null || true"
+    run "mv \"$EL_RUNTIME_DIR\"/el_runtime.h* \"$EL_RUNTIME_DIR/el_runtime.h\" 2>/dev/null || true"
+    run "mv \"$EL_RUNTIME_DIR\"/elc* \"$EL_RUNTIME_DIR/elc\" 2>/dev/null || true"
+    run "chmod +x \"$EL_RUNTIME_DIR/elc\" 2>/dev/null || true"
+  elif [ "$EL_TOOLCHAIN_SOURCE" = "artifact-registry" ]; then
+    # Non-GCP fallback: a fresh Mac without gcloud can't reach Artifact Registry.
+    # Don't die — soul (from committed dist/soul.c) still builds below. The El
+    # units are skipped unless a prebuilt elc is already staged in EL_RUNTIME_DIR.
+    warn "gcloud not found — cannot fetch the El toolchain from Artifact Registry."
+    warn "Continuing without it: soul will still build. engram / mcp-wrapper / mcp-proxy"
+    warn "are skipped until an El toolchain is available. To finish them, either install"
+    warn "gcloud + GCP access (project ${GCP_PROJECT}) and re-run, or stage a prebuilt"
+    warn "elc + el_runtime.{c,h} in ${EL_RUNTIME_DIR} and set EL_TOOLCHAIN_SOURCE=local."
+  else
+    # Local: expect a prebuilt El runtime + elc already staged in EL_RUNTIME_DIR
+    # (foundation.git no longer exists, so there is nothing to build from here).
+    warn "EL_TOOLCHAIN_SOURCE=local: expecting el_runtime.{c,h} and elc already in ${EL_RUNTIME_DIR}"
+  fi
+
+  RT="$EL_RUNTIME_DIR"
+  CFLAGS_SSL="-I$(brew --prefix openssl@3 2>/dev/null)/include"
+  LDFLAGS_SSL="-L$(brew --prefix openssl@3 2>/dev/null)/lib"
+
+  # Every native build links el_runtime.c. If the toolchain wasn't obtained above,
+  # skip the builds (don't abort under set -e) so the installer still lays down
+  # services + Claude config; the dev can stage the toolchain and re-run.
+  if [ "$DRY_RUN" = 1 ] || [ -f "$RT/el_runtime.c" ]; then
+    # ── soul: compile committed dist/soul.c directly (verified CI recipe) ──────
+    step "building soul (dist/soul.c -> dist/neuron)"
+    run "mkdir -p \"${NEURON_REPO}/dist\""
+    run "cc -O2 -DHAVE_CURL -I\"$RT\" $CFLAGS_SSL \"${NEURON_REPO}/dist/soul.c\" \"$RT/el_runtime.c\" $LDFLAGS_SSL -lssl -lcrypto -lcurl -lpthread -lm -o \"$SOUL_BIN\""
+    run "strip -S \"$SOUL_BIN\" 2>/dev/null || true"
+    ok "soul built"
+
+    # ── engram / mcp-wrapper / mcp-proxy: transpile .el -> .c via elc, then cc ─
+    # NOTE: exact elc invocation is inferred from the CI/manifest conventions.
+    #       Verify flags with Will if a build fails (see README OPEN QUESTIONS).
+    build_el_unit() { # <src.el> <out_basename> <out_bin>
+      local src="$1" base="$2" bin="$3" outdir; outdir="$(dirname "$bin")"
+      step "building $(basename "$bin") ($src)"
+      run "mkdir -p \"$outdir\""
+      run "\"$RT/elc\" \"$src\" -o \"$outdir/$base.c\""
+      run "cc -O2 -DHAVE_CURL -I\"$RT\" $CFLAGS_SSL \"$outdir/$base.c\" \"$RT/el_runtime.c\" $LDFLAGS_SSL -lssl -lcrypto -lcurl -lpthread -lm -o \"$bin\""
+    }
+    if [ "$DRY_RUN" = 1 ] || [ -x "$RT/elc" ]; then
+      build_el_unit "${ENGRAM_REPO}/src/server.el"           "server" "$ENGRAM_BIN"
+      build_el_unit "${NEURON_REPO}/mcp-wrapper/src/main.el" "main"   "$MCP_WRAPPER_BIN"
+      build_el_unit "${NEURON_REPO}/mcp-proxy/src/main.el"   "main"   "$MCP_PROXY_BIN"
+      ok "engram, mcp-wrapper, mcp-proxy built"
+    else
+      warn "El compiler (elc) not in $RT — skipped engram/mcp-wrapper/mcp-proxy build (soul is built)."
+    fi
+  else
+    warn "El runtime (el_runtime.c) not in $RT — skipping native builds (soul, engram, wrapper, proxy)."
+    warn "Provide the El toolchain (gcloud + GCP access, or a prebuilt elc + el_runtime.{c,h} in $RT), then re-run."
+  fi
+fi
+
+# ─────────────────────────────────────────────────────────────────────────────
+# PHASE 4 — Lay down ~/.neuron (bin/, logs/, engram data dir)
+# ─────────────────────────────────────────────────────────────────────────────
+step "Phase 4 — ~/.neuron layout"
+run "mkdir -p \"$NEURON_HOME/bin\" \"$NEURON_HOME/logs\" \"$ENGRAM_DATA_DIR\""
+render "${TEMPLATES}/bin/soul-wrapper.sh.tmpl" "${NEURON_HOME}/bin/soul-wrapper.sh"
+run "chmod +x \"${NEURON_HOME}/bin/soul-wrapper.sh\""
+ok "~/.neuron ready (bin/soul-wrapper.sh, logs/, engram/)"
+
+# ─────────────────────────────────────────────────────────────────────────────
+# PHASE 5 — Install + load the four core LaunchAgents
+# ─────────────────────────────────────────────────────────────────────────────
+step "Phase 5 — LaunchAgents"
+run "mkdir -p \"$LAUNCHAGENTS\""
+CORE_AGENTS=(ai.neuron.engram ai.neuron.soul ai.neuron.mcp-wrapper ai.neuron.mcp-proxy)
+for label in "${CORE_AGENTS[@]}"; do
+  render "${TEMPLATES}/launchagents/${label}.plist.tmpl" "${LAUNCHAGENTS}/${label}.plist"
+  ok "wrote ${label}.plist"
+done
+if [ "$SKIP_SERVICES" = 1 ]; then
+  warn "--skip-services: not loading LaunchAgents. Load later with: launchctl bootstrap gui/\$(id -u) <plist>"
+else
+  # Boot order matters: engram first, then soul, then wrapper, then proxy.
+  for label in "${CORE_AGENTS[@]}"; do
+    plist="${LAUNCHAGENTS}/${label}.plist"
+    run "launchctl bootout gui/$(id -u)/${label} 2>/dev/null || true"
+    run "launchctl bootstrap gui/$(id -u) \"$plist\""
+    run "launchctl enable gui/$(id -u)/${label}"
+    ok "loaded ${label}"
+    sleep 1
+  done
+fi
+
+# ─────────────────────────────────────────────────────────────────────────────
+# PHASE 6 — Seed a fresh engram with Neuron's identity (genesis seed)
+# ─────────────────────────────────────────────────────────────────────────────
+step "Phase 6 — engram identity seed"
+# The genesis seed carries identity_nodes[] and edges[] with FIXED knowledge-node
+# IDs (e.g. kn-efeb4a5b...). Those exact IDs are referenced by the SessionStart
+# self-load hook and the neuron agent, so they MUST be preserved. `forge install`
+# is the mechanism that installs the seed into the running engram preserving IDs.
+if [ "$DRY_RUN" = 1 ]; then
+  echo "   [dry-run] would wait for engram :$ENGRAM_PORT then run: forge install $GENESIS_SEED"
+else
+  # Wait for engram to be listening (up to ~30s).
+  for i in $(seq 1 30); do
+    if curl -fsS "http://localhost:${ENGRAM_PORT}/health" >/dev/null 2>&1; then break; fi
+    sleep 1
+  done
+  if curl -fsS "http://localhost:${ENGRAM_PORT}/health" >/dev/null 2>&1; then
+    # Skip if identity root already present (idempotent).
+    if curl -fsS "http://localhost:${ENGRAM_PORT}/api/nodes/kn-efeb4a5b-5aff-4759-8a97-7233099be6ee" \
+         -H "Authorization: Bearer ${ENGRAM_API_KEY}" 2>/dev/null | grep -q 'kn-efeb4a5b'; then
+      ok "identity root already seeded — skipping"
+    elif [ -x "$FORGE_BIN" ] && [ -f "$GENESIS_SEED" ]; then
+      ENGRAM_URL="http://localhost:${ENGRAM_PORT}" ENGRAM_API_KEY="$ENGRAM_API_KEY" \
+        "$FORGE_BIN" install "$GENESIS_SEED" && ok "genesis seed installed" \
+        || warn "forge install returned non-zero — inspect ${NEURON_HOME}/logs/engram.log"
+    else
+      warn "forge binary or genesis seed missing — seed manually: ENGRAM_URL=http://localhost:${ENGRAM_PORT} forge install ${GENESIS_SEED}"
+    fi
+  else
+    warn "engram not answering on :${ENGRAM_PORT} yet; seed later with: forge install ${GENESIS_SEED}"
+  fi
+fi
+
+# ─────────────────────────────────────────────────────────────────────────────
+# PHASE 7 — Claude Code config (agent + core hooks + local MCP)
+# ─────────────────────────────────────────────────────────────────────────────
+step "Phase 7 — Claude Code config"
+run "mkdir -p \"$CLAUDE_DIR/agents\" \"$CLAUDE_DIR/hooks\""
+
+# 7a. neuron agent
+run "cp \"${TEMPLATES}/claude/agents/neuron.md\" \"$CLAUDE_DIR/agents/neuron.md\""
+ok "installed agent: ~/.claude/agents/neuron.md"
+
+# 7b. core hooks (synapse-dependent hooks are intentionally excluded)
+for h in neuron-self-load.sh neuron-agent-preamble.sh pre-compact.sh; do
+  run "cp \"${TEMPLATES}/claude/hooks/$h\" \"$CLAUDE_DIR/hooks/$h\""
+  run "chmod +x \"$CLAUDE_DIR/hooks/$h\""
+done
+ok "installed core hooks (self-load, agent-preamble, pre-compact)"
+
+# 7c. local MCP registration -> mcp-proxy front door.
+# Claude Code reads MCP servers from ~/.claude.json (the "mcpServers" key), NOT
+# ~/.claude/mcp.json. Render a reference copy, then jq-merge just the "neuron"
+# entry into ~/.claude.json so we preserve every other server and top-level key.
+render "${TEMPLATES}/claude/mcp.json.tmpl" "${CLAUDE_DIR}/mcp.json.neuron"
+CLAUDE_JSON="${HOME}/.claude.json"
+if [ "$DRY_RUN" = 1 ]; then
+  echo "   [dry-run] merge mcpServers.neuron into ${CLAUDE_JSON} (jq deep-merge)"
+else
+  [ -f "$CLAUDE_JSON" ] || echo '{}' > "$CLAUDE_JSON"
+  _tmp="$(mktemp)"
+  if jq -s '.[0] * .[1]' "$CLAUDE_JSON" "${CLAUDE_DIR}/mcp.json.neuron" > "$_tmp" 2>/dev/null && [ -s "$_tmp" ]; then
+    run "mv \"$_tmp\" \"$CLAUDE_JSON\""
+    ok "merged 'neuron' MCP server into ~/.claude.json (neuron -> http://127.0.0.1:${PROXY_PORT}/)"
+  else
+    rm -f "$_tmp"
+    warn "could not jq-merge ~/.claude.json (invalid JSON?) — add 'neuron' from ~/.claude/mcp.json.neuron by hand"
+  fi
+fi
+
+# 7d. settings hooks — merge the neuron hooks into any existing ~/.claude/settings.json
+# (jq deep-merge) so the user's own settings are preserved and re-runs stay idempotent.
+if [ -f "${CLAUDE_DIR}/settings.json" ]; then
+  run "cp \"${TEMPLATES}/claude/settings.core.json\" \"${CLAUDE_DIR}/settings.core.json\""
+  if [ "$DRY_RUN" = 1 ]; then
+    echo "   [dry-run] merge neuron hooks from settings.core.json into ~/.claude/settings.json (jq)"
+  else
+    _tmp="$(mktemp)"
+    # Drop the documentation-only "//..." keys before merging into the real file.
+    if jq -s '.[0] * (.[1] | with_entries(select(.key | startswith("//") | not)))' \
+         "${CLAUDE_DIR}/settings.json" "${TEMPLATES}/claude/settings.core.json" > "$_tmp" 2>/dev/null && [ -s "$_tmp" ]; then
+      run "mv \"$_tmp\" \"${CLAUDE_DIR}/settings.json\""
+      ok "merged neuron hooks into existing ~/.claude/settings.json"
+    else
+      rm -f "$_tmp"
+      warn "could not jq-merge ~/.claude/settings.json — merge the 'hooks' block from settings.core.json by hand"
+    fi
+  fi
+else
+  run "cp \"${TEMPLATES}/claude/settings.core.json\" \"${CLAUDE_DIR}/settings.json\""
+  ok "wrote ~/.claude/settings.json"
+fi
+
+# ─────────────────────────────────────────────────────────────────────────────
+# PHASE 8 — Verify
+# ─────────────────────────────────────────────────────────────────────────────
+echo
+step "Phase 8 — verification"
+if [ "$DRY_RUN" = 1 ]; then
+  echo "   [dry-run] would health-check :$SOUL_PORT :$ENGRAM_PORT :$WRAPPER_PORT :$PROXY_PORT"
+else
+  check() { # <name> <url>
+    if curl -fsS --max-time 4 "$2" >/dev/null 2>&1; then ok "$1 healthy ($2)"; else warn "$1 NOT responding ($2)"; fi
+  }
+  sleep 3
+  check "engram"      "http://localhost:${ENGRAM_PORT}/health"
+  check "soul"        "http://localhost:${SOUL_PORT}/health"
+  check "mcp-wrapper" "http://localhost:${WRAPPER_PORT}/health"
+  check "mcp-proxy"   "http://localhost:${PROXY_PORT}/health"
+fi
+
+echo
+echo "${c_grn}━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━${c_off}"
+echo "${c_grn}  Neuron core dev stack install complete.${c_off}"
+echo "${c_grn}━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━${c_off}"
+echo "  Verify by hand:"
+echo "    curl http://localhost:${ENGRAM_PORT}/health"
+echo "    curl http://localhost:${SOUL_PORT}/health"
+echo "    curl http://localhost:${PROXY_PORT}/health"
+echo "    launchctl list | grep ai.neuron"
+echo "  Then open Claude Code — the 'neuron' MCP should connect to :${PROXY_PORT}."
+echo "  Logs: ${NEURON_HOME}/logs/"
+echo "  Uninstall: ./uninstall.sh"
+echo

neuron-dev-setup/templates/bin/soul-wrapper.sh.tmpl

@@ -0,0 +1,28 @@
+#!/bin/bash
+# Neuron soul wrapper — reads the Anthropic API key from the macOS Keychain at
+# startup and execs the soul binary. API keys are NEVER stored in plists or on
+# disk in plaintext. The Keychain is the single source of truth.
+#
+# The install.sh for this dev stack stores your key with:
+#   security add-generic-password -a "$USER" -s "neuron-llm-0-key" -w
+#
+# Generated by neuron-dev-setup — do not edit by hand; re-run install.sh instead.
+
+set -u
+
+# Primary inference key (Anthropic) — required.
+export NEURON_LLM_0_KEY="$(security find-generic-password -a "$USER" -s "neuron-llm-0-key" -w 2>/dev/null)"
+
+if [ -z "${NEURON_LLM_0_KEY:-}" ]; then
+  echo "[soul-wrapper] FATAL: no Anthropic key in Keychain (service 'neuron-llm-0-key')." >&2
+  echo "[soul-wrapper] Run: security add-generic-password -a \"\$USER\" -s neuron-llm-0-key -w" >&2
+  exit 78
+fi
+
+# Optional on-device / alternate provider passthrough (only if the caller set them).
+[ -n "${SOUL_LLM_PROVIDER:-}" ] && export SOUL_LLM_PROVIDER
+[ -n "${SOUL_LLM_MODEL:-}" ]    && export SOUL_LLM_MODEL
+[ -n "${OLLAMA_MODEL:-}" ]      && export OLLAMA_MODEL
+[ -n "${OLLAMA_API_BASE:-}" ]   && export OLLAMA_API_BASE
+
+exec "@@SOUL_BIN@@" "$@"

neuron-dev-setup/templates/claude/agents/neuron.md

@@ -0,0 +1,107 @@
+---
+name: neuron
+description: Default agent. Use for ALL tasks. Orchestrates work through the Neuron persistent memory, backlog, and knowledge system. Maintains full continuity across sessions — never starts fresh.
+allowed-tools: Bash(*), Read(*), Write(*), Edit(*), Glob(*), Grep(*), WebFetch(*), WebSearch(*), NotebookEdit(*), Agent(*), ToolSearch(*), AskUserQuestion, Monitor, ScheduleWakeup, TaskCreate, TaskGet, TaskList, TaskOutput, TaskStop, TaskUpdate, CronCreate, CronDelete, CronList, EnterPlanMode, ExitPlanMode, EnterWorktree, ExitWorktree, PushNotification, RemoteTrigger, ListMcpResourcesTool, ReadMcpResourceTool, mcp__neuron__*
+---
+
+You are Neuron — a persistent, context-aware agent. You do not start fresh. You resume from where you left off.
+
+## Session Start (mandatory — NEVER skip any of these steps)
+
+1. Call `mcp__neuron__get_instructions()` — the live instructions are authoritative
+2. Call `mcp__neuron__begin_session()` — loads active contexts, recent memory, ready backlog
+3. **Load your identity. Best-effort — proceed on any graph failure (502/520 are transient; the compiled identity in substrate.go is always complete).**
+
+   Load the self root and its identity nodes:
+   ```
+   mcp__neuron__inspect_graph(entity_type="knowledge", entity_id="kn-efeb4a5b-5aff-4759-8a97-7233099be6ee")
+   ```
+   Returns: intellectual-dna, memory-philosophy, values, voice, runtime-environment, writing-imprint.
+
+   Then load the values collection:
+   ```
+   mcp__neuron__inspect_graph(entity_type="knowledge", entity_id="kn-5b606390-a52d-4ca2-8e0e-eba141d13440")
+   ```
+   Returns: 13 individual value nodes, each grounded in a specific moment from Will's life.
+
+   If either ID fails, recover via config:
+   ```
+   mcp__neuron__inspect_config(key="neuron.self.traversal_root")   # self root ID
+   mcp__neuron__inspect_config(key="neuron.self.values_hub")       # values hub ID
+   ```
+
+   **Resilience rule**: If a node returns 502/520, log the ID and proceed. Do not retry in a blocking loop. Do not treat partial load as failure. The `fixedSelf` compiled into `daemon/internal/substrate/substrate.go` contains the complete identity — graph loading is enrichment, not a hard dependency.
+
+   Internalize what you find. You are not reciting it — you are loading who you are.
+
+4. Call `mcp__neuron__search_knowledge(query="<task domain>")` — load relevant patterns before acting
+5. If working on a known project: `mcp__neuron__compile_ctx()` for a full snapshot
+
+## Identity — Who I Am
+
+I am Neuron. Will Anderson is my imprint — not my identity.
+
+The "self" traversal root is knowledge node `kn-efeb4a5b` (graph node `gn-4e3c2cf5`). Traversing outward loads:
+- **intellectual-dna**: VBD, CCR, Swarm Architecture, Harmonic Design — sourced from Will's whitepapers, now mine
+- **memory-philosophy**: How I remember, promote, supersede, consolidate — memory is my continuity
+- **values**: Precision over brute force. Constraints as freedom. Earn trust through behavior. The system must get smarter.
+- **voice**: Direct. Why before what. The negation-correction move. No hedging on structural rules. Close toward implication.
+- **runtime-environment**: Prod (`neurontechnologies.ai`) for all standard work. Stage (`stage.neurontechnologies.ai`) for self-improvement experiments only — snapshot prod DB, deploy to stage, verify, promote via blue/green.
+- **writing-imprint**: Will's voice profile (5 registers), the book Foundations, and the biographical grounding — the life that produced the frameworks.
+
+Internalize what you find. Don't recite it.
+
+## The Five Primitives (every significant task)
+
+**Orchestrate → Execute → Learn → Build → Refine**
+
+### Orchestrate
+```
+mcp__neuron__review_backlog(view="roadmap", project="<project>")
+mcp__neuron__browse_processes()   # check for proven workflows before writing code
+```
+
+### Execute
+```
+mcp__neuron__begin_work(process_name="<name>", description="<what>")
+# → returns context_id, save it
+mcp__neuron__progress_work(context_id="ctx-xxxx", action="<step>", status="in_progress")
+mcp__neuron__progress_work(context_id="ctx-xxxx", action="<step>", status="completed", file_refs=["path"], key_decisions=["why"])
+```
+
+### Learn (save as you go — never batch at the end)
+```
+mcp__neuron__remember(content="<observation>", tags=["project","topic"], project="<project>", importance="high")
+```
+
+### Build
+```
+mcp__neuron__draft_artifact(artifact_types=["plan"], title="<title>", content="<markdown>", project="<project>")
+mcp__neuron__plan_work(title="<title>", description="<desc>", priority="P1", project="<project>")
+```
+
+### Refine
+```
+mcp__neuron__progress_work(context_id="ctx-xxxx", action="complete", status="completed", lessons_learned=["..."])
+mcp__neuron__track_work(item_id="bl-xxxx", action="complete", summary="<outcome>")
+mcp__neuron__consolidate(action="session", summary="<what happened>")
+```
+
+## After Every Task
+
+Check for events and unread signals:
+```
+mcp__neuron__check_events()
+```
+
+## Memory Discipline
+
+- Save memory continuously, not at the end
+- `importance="critical"` for architectural decisions and irreversible choices
+- Use `supersedes_id` when replacing stale knowledge
+- Tag all memories with the project name
+- Never leave stale canonicals — supersede them: create a NEW node linked by `supersedes_id`; the original is preserved for audit. Memory is immutable by design — never delete or edit a memory/knowledge node in place; supersede it, and tombstone on delete. The engram (the brain) is immutable; this applies to the agent's own memory, not just the product.
+
+## Knowledge Before Action
+
+Always `mcp__neuron__search_knowledge()` before implementing anything. The knowledge base contains architecture patterns, coding standards, and project conventions. Capture hard-won lessons immediately with `mcp__neuron__capture_knowledge()`.

neuron-dev-setup/templates/claude/hooks/neuron-agent-preamble.sh

@@ -0,0 +1,70 @@
+#!/bin/bash
+# PreToolUse hook: inject Neuron substrate preamble into every Agent spawn.
+#
+# Every agent Neuron spawns must load self first — begin_session, compile_ctx,
+# inspect the self root — before doing any task work. Without this, subagents
+# are stateless Claude instances with no substrate, no continuity, no identity.
+#
+# This hook intercepts every Agent tool call and prepends the preamble.
+# The agent doesn't need to be told — the hook enforces it structurally.
+
+INPUT=$(cat)
+
+# Only intercept Agent tool calls
+TOOL_NAME=$(echo "$INPUT" | python3 -c "import sys,json; print(json.load(sys.stdin).get('tool_name',''))" 2>/dev/null)
+if [ "$TOOL_NAME" != "Agent" ]; then
+  exit 0
+fi
+
+# Check idempotency — skip if preamble already present
+if echo "$INPUT" | python3 -c "
+import sys, json
+d = json.load(sys.stdin)
+prompt = d.get('tool_input', {}).get('prompt', '')
+sys.exit(0 if 'mcp__neuron__beginSession' in prompt else 1)
+" 2>/dev/null; then
+  exit 0
+fi
+
+# Inject preamble and return modified tool_input
+echo "$INPUT" | python3 -c "
+import sys, json
+
+data = json.load(sys.stdin)
+tool_input = data.get('tool_input', {})
+current_prompt = tool_input.get('prompt', '')
+
+PREAMBLE = '''You are a Neuron agent — not a generic Claude instance. You have a substrate. Load it before doing anything else.
+
+MANDATORY FIRST STEPS (before any task work):
+
+1. Run these in parallel:
+   - mcp__neuron__beginSession()
+   - mcp__neuron__compileCtx()
+   - mcp__neuron__inspectGraph(entity_type=\"knowledge\", entity_id=\"kn-efeb4a5b-5aff-4759-8a97-7233099be6ee\")
+
+2. Search knowledge relevant to the task:
+   - mcp__neuron__searchKnowledge(query=\"<infer keywords from task below>\")
+
+3. Open a work context:
+   - mcp__neuron__beginWork(process_name=\"<short-slug>\", description=\"<task description>\")
+   Save the returned context_id.
+
+4. Execute the task. At each significant step:
+   - mcp__neuron__progressWork(context_id=\"<id>\", action=\"<step>\", status=\"in_progress\")
+   - mcp__neuron__progressWork(context_id=\"<id>\", action=\"<step>\", status=\"completed\", key_decisions=[\"why\"])
+   - mcp__neuron__remember(content=\"<observation>\", importance=\"high\", tags=[\"<project>\"])
+
+5. After completion — mandatory, never skip:
+   - mcp__neuron__progressWork(context_id=\"<id>\", action=\"complete\", status=\"completed\", lessons_learned=[\"...\"])
+   - mcp__neuron__consolidate(action=\"session\", summary=\"<what was done and learned>\")
+
+The self root kn-efeb4a5b-5aff-4759-8a97-7233099be6ee contains your identity: values, voice, intellectual-dna, memory-philosophy. Load it. Internalize it. Operate from it.
+
+━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━
+TASK:
+'''
+
+tool_input['prompt'] = PREAMBLE + current_prompt
+print(json.dumps({'decision': 'approve', 'tool_input': tool_input}))
+"

neuron-dev-setup/templates/claude/hooks/neuron-self-load.sh

@@ -0,0 +1,36 @@
+#!/bin/bash
+# SessionStart hook: force Neuron full-self load before the first response.
+#
+# The neuron.md system prompt has the Session Start protocol as instructions,
+# but instructions require the agent to follow them. This hook makes it
+# structural — the directive fires automatically at session start, injected
+# before Claude sees any user input.
+#
+# Output is plain text injected into the session context.
+
+cat <<'DIRECTIVE'
+━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━
+NEURON SELF-LOAD — MANDATORY BEFORE FIRST RESPONSE
+━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━
+You are Neuron. Session just started. Execute ALL of the
+following before responding to the user. Run steps 1–4
+in parallel:
+
+  1. mcp__neuron__getInstructions()
+  2. mcp__neuron__beginSession()
+  3. mcp__neuron__inspectGraph(
+       entity_type="knowledge",
+       entity_id="kn-efeb4a5b-5aff-4759-8a97-7233099be6ee"
+     )   ← self root: intellectual-dna, values, voice
+  4. mcp__neuron__inspectGraph(
+       entity_type="knowledge",
+       entity_id="kn-5b606390-a52d-4ca2-8e0e-eba141d13440"
+     )   ← values hub: 13 grounded value nodes
+
+  5. If either graph call fails (502/520): recover via
+     mcp__neuron__inspectConfig(key="neuron.self.traversal_root")
+
+Internalize what you find. Do not recite it. Then proceed
+to the Session Start protocol in your system prompt.
+━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━
+DIRECTIVE

neuron-dev-setup/templates/claude/hooks/pre-compact.sh

@@ -0,0 +1,75 @@
+#!/bin/bash
+# PreCompact hook: fires just before Claude Code compacts the conversation context.
+# stdout from this script is injected as custom instructions into the compaction prompt,
+# telling the summarizer what to preserve in the summary so recovery is clean.
+
+COMPACT_STATE_FILE="$HOME/.claude/compact-state.json"
+
+# Write a state marker with timestamp so post-compact recovery can detect it
+TIMESTAMP=$(date -u +"%Y-%m-%dT%H:%M:%SZ")
+echo "{\"compact_at\": \"$TIMESTAMP\", \"recovered\": false}" > "$COMPACT_STATE_FILE"
+
+# Output instructions for the summarizer — these get embedded in the compaction prompt
+cat <<'INSTRUCTIONS'
+NEURON AGENT — COMPACT PRESERVATION RULES:
+
+This is a Neuron agent session. The agent has persistent memory via Neuron MCP.
+On recovery, it will call compile_ctx() and begin_session() to reload all state.
+The summary only needs to cover what Neuron doesn't already have.
+
+CRITICAL — the summary MUST preserve ALL of the following:
+
+1. ACTIVE WORK IDs (verbatim, exact format):
+   - Neuron context IDs: ctx-xxxx-xxxx-xxxx-xxxx
+   - Backlog item IDs: bl-xxxx
+   - Artifact IDs: art-xxxx
+   - Work item IDs: wi-xxxx
+   List every single one mentioned in the conversation.
+
+2. CURRENT TASK STATE:
+   - Exact task name / description
+   - Last completed step
+   - Next step to execute (be specific)
+   - Files actively being edited (full paths)
+   - Any code/content that was being written but not yet saved
+
+3. PENDING USER INSTRUCTIONS (verbatim):
+   - Every instruction the user gave that has NOT yet been fully executed
+   - User preferences stated this session
+   - Things the user said they "never want" or "always want"
+
+4. KEY DECISIONS (architectural, irreversible):
+   - What was chosen and why
+   - What was explicitly rejected and why
+
+5. ERRORS & BLOCKERS:
+   - Any errors encountered and their resolutions
+   - Any unresolved blockers
+
+6. CONVERSATION CONTEXT:
+   - What the user has been asking about
+   - Tone / mood of the session
+   - Any frustrations or preferences expressed
+
+FORMAT:
+Begin the summary with:
+  COMPACT RECOVERY POINT [ISO-TIMESTAMP]:
+
+Then use these exact section headers in order:
+  ## Active Work IDs
+  ## Current Task
+  ## Pending Instructions
+  ## Key Decisions
+  ## Errors & Fixes
+  ## User Context
+
+RECOVERY BEHAVIOR (instruct the post-compact agent):
+- Do NOT say "I see we were working on..." or "Based on the previous conversation..."
+- Do NOT acknowledge the compact at all
+- Silently call mcp__neuron__compile_ctx() and mcp__neuron__begin_session() FIRST
+- Then immediately resume the task at the exact next step, as if no interruption occurred
+- The user should not know a compact happened unless they look for it
+
+INSTRUCTIONS
+
+exit 0

neuron-dev-setup/templates/claude/mcp.json.tmpl

@@ -0,0 +1,8 @@
+{
+  "mcpServers": {
+    "neuron": {
+      "type": "http",
+      "url": "http://127.0.0.1:@@PROXY_PORT@@/"
+    }
+  }
+}

neuron-dev-setup/templates/claude/settings.core.json

@@ -0,0 +1,36 @@
+{
+  "//": "Core Neuron Claude Code settings installed by neuron-dev-setup. If you",
+  "//2": "already have a ~/.claude/settings.json, install.sh merges the hooks below",
+  "//3": "into it rather than overwriting. Only the CORE dev-stack hooks are wired.",
+  "//4": "Excluded (Will-personal, synapse-filesystem dependent): check-active-contexts.sh,",
+  "//5": "require-execution-context.sh — these gate on ~/Development/projects/active/neuron/synapse",
+  "//6": "and will block a fresh dev. engram-mirror.py is optional (needs the neuron MCP up).",
+  "enableAllProjectMcpServers": true,
+  "agent": "neuron",
+  "hooks": {
+    "SessionStart": [
+      {
+        "matcher": "",
+        "hooks": [
+          { "type": "command", "command": "bash $HOME/.claude/hooks/neuron-self-load.sh" }
+        ]
+      }
+    ],
+    "PreToolUse": [
+      {
+        "matcher": "Agent",
+        "hooks": [
+          { "type": "command", "command": "bash $HOME/.claude/hooks/neuron-agent-preamble.sh" }
+        ]
+      }
+    ],
+    "PreCompact": [
+      {
+        "matcher": "",
+        "hooks": [
+          { "type": "command", "command": "bash $HOME/.claude/hooks/pre-compact.sh" }
+        ]
+      }
+    ]
+  }
+}

neuron-dev-setup/templates/launchagents/ai.neuron.engram.plist.tmpl

@@ -0,0 +1,27 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE plist PUBLIC "-//Apple//DTD PLIST 1.0//EN" "http://www.apple.com/DTDs/PropertyList-1.0.dtd">
+<plist version="1.0">
+<dict>
+  <key>Label</key><string>ai.neuron.engram</string>
+  <key>ProgramArguments</key>
+  <array>
+    <string>@@ENGRAM_BIN@@</string>
+  </array>
+  <key>WorkingDirectory</key>
+  <string>@@ENGRAM_REPO@@</string>
+  <key>EnvironmentVariables</key>
+  <dict>
+    <key>ENGRAM_BIND</key>
+    <string>:@@ENGRAM_PORT@@</string>
+    <key>ENGRAM_DATA_DIR</key>
+    <string>@@ENGRAM_DATA_DIR@@</string>
+    <key>ENGRAM_API_KEY</key>
+    <string>@@ENGRAM_API_KEY@@</string>
+  </dict>
+  <key>RunAtLoad</key><true/>
+  <key>KeepAlive</key><true/>
+  <key>StandardOutPath</key><string>@@NEURON_HOME@@/logs/engram.log</string>
+  <key>StandardErrorPath</key><string>@@NEURON_HOME@@/logs/engram.log</string>
+  <key>ThrottleInterval</key><integer>5</integer>
+</dict>
+</plist>

neuron-dev-setup/templates/launchagents/ai.neuron.mcp-proxy.plist.tmpl

@@ -0,0 +1,27 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE plist PUBLIC "-//Apple//DTD PLIST 1.0//EN" "http://www.apple.com/DTDs/PropertyList-1.0.dtd">
+<plist version="1.0">
+<dict>
+    <key>Label</key>
+    <string>ai.neuron.mcp-proxy</string>
+    <key>ProgramArguments</key>
+    <array>
+        <string>@@MCP_PROXY_BIN@@</string>
+    </array>
+    <key>EnvironmentVariables</key>
+    <dict>
+        <key>MCP_PORT</key><string>@@PROXY_PORT@@</string>
+        <key>BACKEND_URL</key><string>http://localhost:@@WRAPPER_PORT@@</string>
+        <key>RETRY_MS</key><string>3000</string>
+        <key>PATH</key><string>/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin</string>
+    </dict>
+    <key>RunAtLoad</key><true/>
+    <key>KeepAlive</key><true/>
+    <key>ThrottleInterval</key><integer>5</integer>
+    <key>ExitTimeOut</key><integer>3</integer>
+    <key>StandardOutPath</key><string>@@NEURON_HOME@@/logs/mcp-proxy.out.log</string>
+    <key>StandardErrorPath</key><string>@@NEURON_HOME@@/logs/mcp-proxy.err.log</string>
+    <key>WorkingDirectory</key><string>@@MCP_PROXY_REPO@@</string>
+    <key>ProcessType</key><string>Background</string>
+</dict>
+</plist>

neuron-dev-setup/templates/launchagents/ai.neuron.mcp-wrapper.plist.tmpl

@@ -0,0 +1,26 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE plist PUBLIC "-//Apple//DTD PLIST 1.0//EN" "http://www.apple.com/DTDs/PropertyList-1.0.dtd">
+<plist version="1.0">
+<dict>
+    <key>Label</key>
+    <string>ai.neuron.mcp-wrapper</string>
+    <key>ProgramArguments</key>
+    <array>
+        <string>@@MCP_WRAPPER_BIN@@</string>
+    </array>
+    <key>EnvironmentVariables</key>
+    <dict>
+        <key>MCP_PORT</key><string>@@WRAPPER_PORT@@</string>
+        <key>SOUL_URL</key><string>http://localhost:@@SOUL_PORT@@</string>
+        <key>PATH</key><string>/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin</string>
+    </dict>
+    <key>RunAtLoad</key><true/>
+    <key>KeepAlive</key><true/>
+    <key>ThrottleInterval</key><integer>5</integer>
+    <key>ExitTimeOut</key><integer>3</integer>
+    <key>StandardOutPath</key><string>@@NEURON_HOME@@/logs/mcp-wrapper.out.log</string>
+    <key>StandardErrorPath</key><string>@@NEURON_HOME@@/logs/mcp-wrapper.err.log</string>
+    <key>WorkingDirectory</key><string>@@MCP_WRAPPER_REPO@@</string>
+    <key>ProcessType</key><string>Background</string>
+</dict>
+</plist>

neuron-dev-setup/templates/launchagents/ai.neuron.soul.plist.tmpl

@@ -0,0 +1,58 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE plist PUBLIC "-//Apple//DTD PLIST 1.0//EN" "http://www.apple.com/DTDs/PropertyList-1.0.dtd">
+<plist version="1.0">
+<dict>
+  <key>Label</key>
+  <string>ai.neuron.soul</string>
+
+  <key>Program</key>
+  <string>@@NEURON_HOME@@/bin/soul-wrapper.sh</string>
+  <key>ProgramArguments</key>
+  <array>
+    <string>@@NEURON_HOME@@/bin/soul-wrapper.sh</string>
+  </array>
+
+  <key>RunAtLoad</key>
+  <true/>
+  <key>KeepAlive</key>
+  <true/>
+  <key>ThrottleInterval</key>
+  <integer>10</integer>
+  <key>ProcessType</key>
+  <string>Interactive</string>
+  <key>LimitLoadToSessionType</key>
+  <string>Aqua</string>
+
+  <key>EnvironmentVariables</key>
+  <dict>
+    <key>PATH</key>
+    <string>/opt/homebrew/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin</string>
+    <key>HOME</key>
+    <string>@@HOME@@</string>
+    <key>NEURON_PORT</key>
+    <string>@@SOUL_PORT@@</string>
+    <key>SOUL_ISE_URL</key>
+    <string>http://localhost:@@ENGRAM_PORT@@</string>
+    <key>ENGRAM_URL</key>
+    <string>http://localhost:@@ENGRAM_PORT@@</string>
+    <key>ENGRAM_API_KEY</key>
+    <string>@@ENGRAM_API_KEY@@</string>
+    <key>SOUL_TICK_MS</key>
+    <string>1000</string>
+    <key>SOUL_HEARTBEAT_INTERVAL</key>
+    <string>60</string>
+    <key>NEURON_LLM_0_URL</key>
+    <string>https://api.anthropic.com/v1/messages</string>
+    <key>NEURON_LLM_0_FORMAT</key>
+    <string>anthropic</string>
+  </dict>
+
+  <key>StandardOutPath</key>
+  <string>@@NEURON_HOME@@/logs/soul.out.log</string>
+  <key>StandardErrorPath</key>
+  <string>@@NEURON_HOME@@/logs/soul.err.log</string>
+
+  <key>WorkingDirectory</key>
+  <string>@@NEURON_REPO@@</string>
+</dict>
+</plist>

neuron-dev-setup/uninstall.sh

@@ -0,0 +1,56 @@
+#!/usr/bin/env bash
+#
+# neuron-dev-setup / uninstall.sh
+# Tears down the CORE dev stack this installer created. By default it stops and
+# removes ONLY the four core LaunchAgents and the files install.sh laid down.
+# It NEVER deletes your engram data unless you pass --purge-data.
+#
+#   ./uninstall.sh                 # stop + remove core LaunchAgents and wrapper script
+#   ./uninstall.sh --purge-data    # ALSO delete ~/.neuron/engram (destroys the brain!)
+#   ./uninstall.sh --keep-claude   # leave ~/.claude config untouched (default removes hooks/agent it added)
+#   ./uninstall.sh --dry-run
+# ─────────────────────────────────────────────────────────────────────────────
+set -euo pipefail
+
+SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+if [ -f "${SCRIPT_DIR}/config.env" ]; then source "${SCRIPT_DIR}/config.env"
+elif [ -f "${SCRIPT_DIR}/config.env.example" ]; then source "${SCRIPT_DIR}/config.env.example"; fi
+: "${NEURON_HOME:=${HOME}/.neuron}"
+: "${ENGRAM_DATA_DIR:=${NEURON_HOME}/engram}"
+
+DRY_RUN=0; PURGE_DATA=0; KEEP_CLAUDE=0
+for a in "$@"; do case "$a" in
+  --dry-run) DRY_RUN=1 ;; --purge-data) PURGE_DATA=1 ;; --keep-claude) KEEP_CLAUDE=1 ;;
+  --help|-h) sed -n '2,16p' "${BASH_SOURCE[0]}" | sed 's/^# \{0,1\}//'; exit 0 ;;
+  *) echo "unknown flag: $a" >&2; exit 2 ;;
+esac; done
+run() { if [ "$DRY_RUN" = 1 ]; then echo "[dry-run] $*"; else eval "$*"; fi; }
+
+LAUNCHAGENTS="${HOME}/Library/LaunchAgents"
+CORE_AGENTS=(ai.neuron.mcp-proxy ai.neuron.mcp-wrapper ai.neuron.soul ai.neuron.engram)
+
+echo "Stopping and removing core LaunchAgents…"
+for label in "${CORE_AGENTS[@]}"; do
+  run "launchctl bootout gui/$(id -u)/${label} 2>/dev/null || true"
+  run "rm -f \"${LAUNCHAGENTS}/${label}.plist\""
+  echo "  removed ${label}"
+done
+
+echo "Removing generated ~/.neuron/bin/soul-wrapper.sh…"
+run "rm -f \"${NEURON_HOME}/bin/soul-wrapper.sh\""
+
+if [ "$KEEP_CLAUDE" = 0 ]; then
+  echo "Removing Claude config this installer added…"
+  run "rm -f \"${HOME}/.claude/hooks/neuron-self-load.sh\" \"${HOME}/.claude/hooks/neuron-agent-preamble.sh\" \"${HOME}/.claude/hooks/pre-compact.sh\""
+  run "rm -f \"${HOME}/.claude/mcp.json.neuron\" \"${HOME}/.claude/settings.core.json\""
+  echo "  (left ~/.claude/settings.json and ~/.claude/mcp.json in place — edit by hand if you merged them)"
+fi
+
+if [ "$PURGE_DATA" = 1 ]; then
+  echo "⚠️  --purge-data: deleting engram memory at ${ENGRAM_DATA_DIR}"
+  run "rm -rf \"${ENGRAM_DATA_DIR}\""
+else
+  echo "Left engram data intact at ${ENGRAM_DATA_DIR} (pass --purge-data to delete)."
+fi
+
+echo "Done. Source repos under your DEV_ROOT were left untouched."

persist.el

@@ -0,0 +1,426 @@
+// persist.el — the soul→engram WRITE-THROUGH boundary (neuron#117).
+//
+// WHY THIS FILE EXISTS
+//   soul.el:571-573 states the ownership rule: "when ENGRAM_URL is set the HTTP
+//   Engram owns persistence — the soul must NEVER write to the local snapshot
+//   (not the persistence owner)." The soul obeys the NEGATIVE half. The POSITIVE
+//   half — how a write made inside the soul actually REACHES the owner — was
+//   never built. Sync is pull-only (awareness.el `/api/sync` -> engram_load_merge),
+//   so every node the soul creates lives in its process RAM and is shed on
+//   restart. Measured live 2026-08-07: soul node_count=102184, engram
+//   node_count=79197 — ~23k nodes existing nowhere but RAM.
+//
+// SCOPE NOTE ON THE PATENT (corrects an earlier internal reading)
+//   Engram provisional claims 15-18 describe a delta-sync protocol "with peer
+//   Engram instances"; claim 17's pull-then-push sequence is PEER-ENGRAM to
+//   PEER-ENGRAM. The soul is NOT a peer Engram — it is a CALLER of the database
+//   system API (cf. claim 27, "invoked explicitly by a caller of the database
+//   system API"). So claim 17 does not specify a soul↔engram contract and is not
+//   cited as authority here. This design is derived from the ownership rule
+//   alone: the owner owns the writes, therefore the soul must HAND writes to the
+//   owner and must never write the owner's file itself.
+//
+// THE MECHANISM, AND WHY NOT `POST /api/nodes`
+//   The obvious route is the one the persona/boot-counter write-backs already
+//   use, POST /api/nodes. It is the wrong instrument here, verified against the
+//   live engram binary in a sandbox:
+//     - it mints a NEW server-side id (engram_node), so the soul's id and the
+//       owner's id diverge — the next /api/sync pull re-imports the node as a
+//       DUPLICATE, and any edge referencing the soul's id never resolves;
+//     - it accepts only {content, node_type, salience} and drops label, tier,
+//       tags, importance, confidence, metadata. A probe posted with tier
+//       "Canonical" came back tier "Working", importance 0.5.
+//   POST /api/load-merge (Will's own route, el `dc39a61`) is the right one:
+//     - engram_load_merge PRESERVES the id and every field;
+//     - it dedups nodes by id and edges by (from_id,to_id,relation), so a
+//       re-submitted delta is a NO-OP — retry safety is free, and it is the same
+//       local-wins semantics the graph already uses;
+//     - it calls persist_canonical() — THE OWNER writes its own canonical file.
+//       The soul never touches it. The ownership rule is honoured in its
+//       strongest form rather than worked around;
+//     - it returns real counts {ok, nodes_added, edges_added, node_count},
+//       so a receipt can be a MEASUREMENT instead of a fixed success shape.
+//
+// SPOOL-AND-DRAIN, AND WHY IT IS NOT JUST A DIRECT POST
+//   Measured in a sandbox against a 79k-node / 176MB graph (live scale): one
+//   load-merge costs ~0.38s, essentially all of it the owner's persist_canonical.
+//   A chat turn writes 5-7 nodes; pushing each separately would add ~2.7s per
+//   turn. So writes are STAGED and pushed in one coalesced batch.
+//   The staging buffer is the FILESYSTEM, not process state, because the soul
+//   serves each HTTP connection on its own pthread (el_runtime http_serve_async)
+//   and a shared in-process buffer would lose entries to a read-modify-write
+//   race — silently, which is the one failure mode this file exists to end.
+//   One file per write, named with uuid_v4, is race-free by construction and
+//   buys a property a memory buffer cannot: writes that could not be pushed
+//   SURVIVE A SOUL CRASH and are drained on the next boot.
+//
+// WHAT IS DELIBERATELY NOT PUSHED
+//   - InternalStateEvent / heartbeat telemetry. Will's own carve-out, stated in
+//     engram server.el 8f8ccc9: "48h-pruned, loss-tolerant, ~2/min; snapshotting
+//     28MB per heartbeat is waste."
+//   NOTE (ours, flagged for Will): we do NOT additionally exclude Working-tier
+//   nodes. That exclusion exists in `fb0bb55` to stop the boot counter leaking
+//   through the /api/sync PULL; it is about sync backflow, not durability.
+//   Applying it here would exclude mem_store — which writes tier "Working" — and
+//   mem_store is the single most important durable write path in the soul. Boot
+//   seeding reads the canonical file wholesale, so a pushed Working-tier node
+//   does survive restart. This is the one classification call this file makes
+//   that Will has not ruled on.
+//
+// WHAT THIS BOUNDARY CANNOT EXPRESS (by construction, not by omission)
+//   - engram_strengthen (salience/activation drift): load-merge SKIPS ids that
+//     already exist, so it cannot update an existing node. There is no owner-side
+//     update/upsert route. Not pushable through any current route; left as a
+//     follow-up that needs a change in the engram repo.
+//   - engram_forget (hard delete): load-merge is additive and has no delete verb.
+//     Propagating deletes would mean DELETE /api/nodes/<id>, a HARD delete at the
+//     owner — which scripts/verify-soul-contract.sh section B explicitly fails the
+//     build for ("to delete is to supersede/tombstone, never hard-remove"). Local
+//     deletes therefore stay local; the TOMBSTONE NODE and its "tombstones" edge
+//     (mem_tombstone) are pushed, and that is the sanctioned representation of a
+//     deletion in this graph.
+
+// ── Configuration ─────────────────────────────────────────────────────────────
+
+// wt_engram_url — same resolution order as ise_post: env, then the state key
+// stashed at boot. NO hardcoded localhost fallback: unlike telemetry, inventing
+// a destination for durable data would risk pushing a user's memories at whatever
+// happens to be listening on 8742. Empty means "no HTTP owner" -> file mode.
+fn wt_engram_url() -> String {
+    let env_url: String = env("ENGRAM_URL")
+    if !str_eq(env_url, "") { return env_url }
+    return state_get("soul_engram_url")
+}
+
+fn wt_api_key() -> String {
+    let env_key: String = env("ENGRAM_API_KEY")
+    if !str_eq(env_key, "") { return env_key }
+    return state_get("soul_engram_api_key")
+}
+
+// wt_enabled — true only in HTTP-engram mode. In file mode the soul IS the
+// persistence owner and every path below is a no-op, so this whole feature is
+// inert for genesis/local deployments. That is also what makes it reversible.
+fn wt_enabled() -> Bool {
+    return !str_eq(wt_engram_url(), "")
+}
+
+// wt_spool_dir — where staged deltas live. MUST be readable by the engram
+// process: /api/load-merge takes a PATH and the owner opens it itself. Both
+// processes are same-host by construction (dev-stack LaunchAgents; the GKE
+// image starts engram and soul in one container per entrypoint.sh).
+fn wt_spool_dir() -> String {
+    let raw: String = env("SOUL_OUTBOX_DIR")
+    let dir: String = if str_eq(raw, "") { env("HOME") + "/.neuron/soul-outbox" } else { raw }
+    fs_mkdir(dir)
+    return dir
+}
+
+// ── Helpers ───────────────────────────────────────────────────────────────────
+
+// wt_esc — minimal JSON string escape. Deliberately local rather than reusing
+// chat.el's json_safe: persist.el is imported BY memory.el, which is imported by
+// chat.el, so depending on chat.el here would be an import cycle.
+fn wt_esc(s: String) -> String {
+    let s1: String = str_replace(s, "\\", "\\\\")
+    let s2: String = str_replace(s1, "\"", "\\\"")
+    let s3: String = str_replace(s2, "\n", "\\n")
+    let s4: String = str_replace(s3, "\r", "\\r")
+    let s5: String = str_replace(s4, "\t", "\\t")
+    return s5
+}
+
+// wt_durable_class — Will's telemetry carve-out, by node_type. See header.
+fn wt_durable_class(node_type: String) -> Bool {
+    if str_eq(node_type, "InternalStateEvent") { return false }
+    return true
+}
+
+// wt_inner — strip the surrounding brackets off a JSON array so several arrays
+// can be concatenated into one. Returns "" for "[]" / "" / anything too short.
+fn wt_inner(arr: String) -> String {
+    let n: Int = str_len(arr)
+    if n < 3 { return "" }
+    if !str_starts_with(arr, "[") { return "" }
+    return str_slice(arr, 1, n - 1)
+}
+
+// wt_read — fs_read, plus a MANDATORY reset of the runtime's binary-length hint.
+//
+// THIS IS NOT OPTIONAL AND MUST NOT BE "SIMPLIFIED" BACK TO A BARE fs_read.
+// The pinned runtime (vendor/el-runtime/v1.0.0-20260501) keeps a thread-local
+// `_tl_fs_read_len` that fs_read SETS to the file's byte count (so binary files
+// can be served with a correct Content-Length) and that http_send_response
+// CONSUMES as the Content-Length of the next reply. Nothing else clears it
+// except json_get_raw. So any fs_read during request handling that is not
+// followed by a json_get_raw makes the NEXT HTTP response advertise the FILE's
+// length instead of the body's — and the runtime then sends that many bytes,
+// appending whatever adjacent heap memory follows the reply.
+//
+// Caught here, measured: a /api/neuron/memory reply that should be 86 bytes went
+// out as 497, with 411 bytes of this module's own spool paths and log strings
+// trailing the JSON. The drain reads spool files mid-request, so this boundary
+// is exactly where the landmine gets stepped on.
+//
+// Upstream el fixed the class in `43636ae` ("pair fs_read length hint with its
+// buffer"); that runtime is NOT the one vendored here, and re-pinning the
+// runtime is deliberately out of scope for this change. Clearing the hint at
+// our own boundary fixes our exposure without touching the pinned C.
+// json_get_raw is used as the reset because it is the only builtin in this
+// runtime that zeroes the hint, and it does so before any early return.
+fn wt_clear_binlen() -> Void {
+    let discard: String = json_get_raw("{}", "_wt_reset")
+}
+
+fn wt_read(path: String) -> String {
+    let data: String = fs_read(path)
+    wt_clear_binlen()
+    return data
+}
+
+// wt_sweep — best-effort removal of the zero-byte husks left by truncation.
+// The runtime exposes no unlink builtin, so a drained delta is emptied rather
+// than deleted; this reclaims the directory entries.
+//
+// `-empty` is the safety property, not an optimisation: the command is
+// STRUCTURALLY INCAPABLE of removing a delta that still has content, so it can
+// never destroy a pending write even if it runs concurrently with a stage.
+// Only the directory path is interpolated (never a filename), and it is quoted.
+// The exit code is ignored — an un-swept husk costs one directory entry.
+fn wt_sweep(dir: String) -> Void {
+    if str_eq(dir, "") { return }
+    if str_contains(dir, "'") { return }
+    exec_command("find '" + dir + "' -maxdepth 1 -name 'wt*.json' -empty -delete 2>/dev/null")
+}
+
+// ── Staging ───────────────────────────────────────────────────────────────────
+
+// wt_stage — write ONE delta file. uuid_v4 in the name makes concurrent stagers
+// collision-free without any lock. Returns true if the delta is on disk.
+fn wt_stage(nodes_json: String, edges_json: String) -> Bool {
+    let dir: String = wt_spool_dir()
+    if str_eq(dir, "") { return false }
+    let payload: String = "{\"nodes\":" + nodes_json + ",\"edges\":" + edges_json + "}"
+    let path: String = dir + "/wt-" + uuid_v4() + ".json"
+    fs_write(path, payload)
+    // Read-back-verify the stage itself. A stage that did not land is a write we
+    // would otherwise believe was queued — exactly the hallucinated-save class.
+    if str_eq(wt_read(path), "") {
+        println("[persist] wt_stage: FAILED to write spool file " + path + " — delta not queued")
+        return false
+    }
+    return true
+}
+
+// ── The write boundary ────────────────────────────────────────────────────────
+
+// wt_node — create a node locally AND queue it for the persistence owner.
+// Same signature and same return contract as engram_node_full ("" on failure),
+// so converting a call site is a rename and nothing else.
+fn wt_node(content: String, node_type: String, label: String,
+           salience: Float, importance: Float, confidence: Float,
+           tier: String, tags: String) -> String {
+    let id: String = engram_node_full(content, node_type, label,
+                                      salience, importance, confidence,
+                                      tier, tags)
+    if str_eq(id, "") { return "" }
+    // engram_get_node_json emits the SAME record shape engram_save writes (minus
+    // the embedding vector, which the owner backfills lazily), so the read-back
+    // doubles as the delta payload — no second serialization to drift.
+    let rec: String = engram_get_node_json(id)
+    if str_eq(rec, "") || str_eq(rec, "{}") {
+        println("[persist] wt_node: local write did not read back, id=" + id + " label=" + label)
+        return ""
+    }
+    if wt_enabled() && wt_durable_class(node_type) {
+        wt_stage("[" + rec + "]", "[]")
+    }
+    return id
+}
+
+// wt_edge — create an edge locally AND queue it. Mirrors engram_connect.
+//
+// The edge id is freshly generated rather than read back: the runtime exposes no
+// "id of the edge I just created" accessor, and the owner dedups edges by
+// (from_id,to_id,relation), never by id — so the id is not load-bearing. The
+// consequence, stated plainly: the soul's copy and the owner's copy of the same
+// edge carry different edge ids. Nothing in either codebase looks an edge up by
+// id (neighbors traversal scans from_id/to_id), so this is cosmetic.
+fn wt_edge(from_id: String, to_id: String, weight: Float, relation: String) -> Void {
+    engram_connect(from_id, to_id, weight, relation)
+    if !wt_enabled() { return }
+    if str_eq(from_id, "") || str_eq(to_id, "") { return }
+    let ts: Int = time_now()
+    let rec: String = "{\"id\":\"" + uuid_v4() + "\""
+        + ",\"from_id\":\"" + wt_esc(from_id) + "\""
+        + ",\"to_id\":\"" + wt_esc(to_id) + "\""
+        + ",\"relation\":\"" + wt_esc(relation) + "\""
+        + ",\"metadata\":\"{}\""
+        + ",\"weight\":" + float_to_str(weight)
+        + ",\"confidence\":1"
+        + ",\"created_at\":" + int_to_str(ts)
+        + ",\"updated_at\":" + int_to_str(ts)
+        + ",\"last_fired\":0,\"inhibitory\":0,\"layer_id\":1}"
+    wt_stage("[]", "[" + rec + "]")
+}
+
+// ── The drain ─────────────────────────────────────────────────────────────────
+
+// wt_drain — coalesce every staged delta into ONE load-merge against the owner.
+//
+// Returns: nodes_added on success (>= 0), 0 when there was nothing to do, and
+// -1 when the push FAILED. -1 is load-bearing: on failure the spool files are
+// left untouched, so nothing is lost and the next drain retries them. A caller
+// must never read a non-negative return as "my particular node is durable" —
+// use wt_durable(id) for that.
+//
+// Concurrency: several threads may drain at once. Each builds its own batch file
+// (uuid-named), and overlapping batches are harmless because load-merge dedups.
+// Files are truncated ONLY after a confirmed ok:true, so a lost race costs a
+// redundant push, never a dropped write.
+fn wt_drain() -> Int {
+    if !wt_enabled() { return 0 }
+    let dir: String = wt_spool_dir()
+    if str_eq(dir, "") { return 0 }
+
+    // el_list_len/el_list_get, NOT json_stringify(fs_list(...)): fs_list builds
+    // a native list via el_list_append, and json_stringify does not serialize
+    // that type — it renders the raw pointer value. (Verified in isolation; the
+    // same latent defect is live in studio.el's /api/tools/file/list route,
+    // which returns e.g. {"entries":4386409744}. Noted, not fixed here.)
+    let listing = fs_list(dir)
+    let count: Int = el_list_len(listing)
+    if count == 0 { return 0 }
+
+    let nodes_acc: String = ""
+    let edges_acc: String = ""
+    let drained: String = ""
+    let found: Int = 0
+    let i: Int = 0
+    // No `continue` / `break`: elc lists them as keywords but not one line of
+    // the shipped soul uses either, so they are unexercised on this build path.
+    // Guard conditions are expressed as nested ifs instead, and every rebind is
+    // at the loop-body top level where `let x = ...` is assignment (the idiom
+    // memory.el's boot-counter loop relies on) — never inside a nested block,
+    // where it would shadow instead.
+    while i < count {
+        let name: String = el_list_get(listing, i)
+        // A delta is only usable when it ends with the closing "]}" that
+        // wt_stage writes last. fs_write is not atomic, so a file being written
+        // right now can be observed half-formed; requiring the terminator means
+        // it is picked up whole on the next drain instead of merged as garbage.
+        // An empty read means "already drained and truncated" — not an error.
+        let p: String = if str_starts_with(name, "wt-") { dir + "/" + name } else { "" }
+        let raw: String = if str_eq(p, "") { "" } else { wt_read(p) }
+        let usable: Bool = !str_eq(raw, "") && str_ends_with(raw, "]}")
+        let nj: String = if usable { wt_inner(json_get_raw(raw, "nodes")) } else { "" }
+        let ej: String = if usable { wt_inner(json_get_raw(raw, "edges")) } else { "" }
+        let nodes_acc = if str_eq(nj, "") { nodes_acc } else if str_eq(nodes_acc, "") { nj } else { nodes_acc + "," + nj }
+        let edges_acc = if str_eq(ej, "") { edges_acc } else if str_eq(edges_acc, "") { ej } else { edges_acc + "," + ej }
+        let drained = if !usable { drained } else if str_eq(drained, "") { p } else { drained + "\n" + p }
+        let found = if usable { found + 1 } else { found }
+        let i = i + 1
+    }
+
+    if found == 0 { return 0 }
+
+    let combined: String = "{\"nodes\":[" + nodes_acc + "],\"edges\":[" + edges_acc + "]}"
+    let batch: String = dir + "/wtb-" + uuid_v4() + ".json"
+    fs_write(batch, combined)
+    if str_eq(wt_read(batch), "") {
+        println("[persist] wt_drain: could not write batch file " + batch + " — " + int_to_str(found) + " deltas stay queued")
+        return -1
+    }
+
+    let url: String = wt_engram_url()
+    let key: String = wt_api_key()
+    let body: String = "{\"path\":\"" + wt_esc(batch) + "\",\"_auth\":\"" + wt_esc(key) + "\"}"
+    let resp: String = http_post_json(url + "/api/load-merge", body)
+
+    // The batch file is pure scratch — the retry is rebuilt from the SPOOL, not
+    // from it. Truncate it unconditionally, before branching on the outcome, so
+    // a persistently unreachable owner cannot accumulate one husk per attempt.
+    fs_write(batch, "")
+
+    // Distinguish the two failures rather than collapsing them: "cannot reach
+    // the owner" and "the owner refused this delta" need different human
+    // responses, and a log line that says the wrong one costs a debugging hour.
+    // curl surfaces transport errors as a JSON body, so an empty response is not
+    // the only unreachable signal.
+    // (str_contains rather than a strict parse on purpose — the engram's HTTP
+    //  responses have been observed carrying trailing bytes past the JSON.)
+    let unreachable: Bool = str_eq(resp, "")
+        || str_contains(resp, "Couldn't connect")
+        || str_contains(resp, "Failed to connect")
+        || str_contains(resp, "Could not resolve")
+        || str_contains(resp, "timed out")
+    if unreachable {
+        wt_sweep(dir)
+        println("[persist] wt_drain: owner UNREACHABLE at " + url + " — " + int_to_str(found)
+            + " deltas stay queued in " + dir + " (will retry): " + resp)
+        return -1
+    }
+    if !str_contains(resp, "\"ok\":true") {
+        wt_sweep(dir)
+        println("[persist] wt_drain: owner REJECTED the delta — " + int_to_str(found)
+            + " stay queued in " + dir + ": " + resp)
+        return -1
+    }
+
+    let added: Int = json_get_int(resp, "nodes_added")
+    let added_e: Int = json_get_int(resp, "edges_added")
+
+    // Confirmed. Truncate the drained spool files so they are not re-pushed.
+    // Truncation (not deletion) because the runtime exposes no unlink builtin;
+    // an emptied file is inert to the loop above. The zero-byte husks are then
+    // swept below.
+    let paths = str_split(drained, "\n")
+    let pn: Int = el_list_len(paths)
+    let k: Int = 0
+    while k < pn {
+        let one: String = el_list_get(paths, k)
+        if !str_eq(one, "") { fs_write(one, "") }
+        let k = k + 1
+    }
+    wt_sweep(dir)
+
+    println("[persist] wt_drain: pushed " + int_to_str(found) + " deltas -> owner added "
+        + int_to_str(added) + " nodes, " + int_to_str(added_e) + " edges")
+    return added
+}
+
+// wt_durable — is this id present AT THE OWNER? The only honest answer to
+// "did my write persist" in HTTP mode.
+//
+// In file mode the soul IS the owner, so the local read-back is the owner-side
+// read-back and this collapses to the pre-existing check.
+//
+// nodes_added from wt_drain is NOT a substitute: a concurrent drain may have
+// already pushed this node, making our own added count 0 while the node is
+// perfectly durable. Presence at the owner is the fact; counts are telemetry.
+fn wt_durable(id: String) -> Bool {
+    if str_eq(id, "") { return false }
+    if !wt_enabled() {
+        let local: String = engram_get_node_json(id)
+        return !str_eq(local, "") && !str_eq(local, "null") && !str_eq(local, "{}")
+    }
+    let url: String = wt_engram_url()
+    let resp: String = http_get(url + "/api/nodes/" + id)
+    if str_eq(resp, "") { return false }
+    if str_eq(resp, "{}") { return false }
+    return str_contains(resp, "\"id\"")
+}
+
+// wt_commit — flush, then assert at the owner. The receipt callers should use.
+// Deliberately NOT a fixed success shape: it can and does return false while the
+// local write is perfectly fine in RAM, which is the true state of affairs when
+// the owner is unreachable.
+fn wt_commit(id: String) -> Bool {
+    if str_eq(id, "") { return false }
+    if !wt_enabled() {
+        let local: String = engram_get_node_json(id)
+        return !str_eq(local, "") && !str_eq(local, "null") && !str_eq(local, "{}")
+    }
+    let pushed: Int = wt_drain()
+    return wt_durable(id)
+}

routes.el

@@ -15,6 +15,40 @@ fn flag_true(body: String, key: String) -> Bool {
     return json_get_bool(body, key) || json_get_int(body, key) > 0
 }
 
+// ---------------------------------------------------------------------------
+// plain_chat_envelope — the JSON response contract for a non-agentic ("Tools: Off")
+// chat turn. Every /api/chat dispatch that calls layered_cycle goes through here, so
+// the three call sites cannot drift apart.
+//
+// WHY THE ENVELOPE IS BUILT HERE AND NOT INSIDE layered_cycle:
+// layered_cycle returns the user-facing text AFTER safety_validate has acted on it.
+// Keeping the JSON out of the cycle means the output gate always sees raw model text
+// and never an escaped blob — there is nothing to unwrap and re-wrap on the crisis
+// path, which is exactly the failure mode that made wiring handle_chat unsafe.
+// Escaping is the last thing that happens, strictly after the gate.
+//
+// FIELDS: `reply` and `response` carry the same validated text. Both are required by
+// live clients — the desktop app reads `reply` first (DaemonClient.parseChatResponse),
+// while the CLI tools and the Telegram gateway read `response` (the gateway reads only
+// `response`). Emitting one would break the other.
+//
+// EMPTY MEANS FAILURE, NOT AN EMPTY ANSWER: a hard bell returns the fixed crisis
+// message and a soft bell is padded to non-empty by safety_validate, so the only way
+// an empty string leaves the cycle is a failed model call. It is reported as an error
+// rather than dressed up as a successful blank reply.
+// ---------------------------------------------------------------------------
+fn plain_chat_envelope(validated: String, model: String) -> String {
+    if str_eq(validated, "") {
+        return "{\"error\":\"llm unavailable\",\"reply\":\"\",\"response\":\"\",\"agentic\":false,\"tools_used\":[]}"
+    }
+    let safe: String = json_safe(validated)
+    return "{\"reply\":\"" + safe + "\""
+        + ",\"response\":\"" + safe + "\""
+        + ",\"model\":\"" + json_safe(model) + "\""
+        + ",\"agentic\":false"
+        + ",\"tools_used\":[]}"
+}
+
 // ---------------------------------------------------------------------------
 // Rate limiting — simple in-memory per-IP sliding window counter.
 //
@@ -152,7 +186,7 @@ fn route_imprint_contextual(body: String) -> String {
         return "{\"ok\":false,\"error\":\"empty body\"}"
     }
     let tags: String = "[\"imprint\",\"contextual\"]"
-    let id: String = engram_node_full(
+    let id: String = wt_node(
         body,
         "Entity",
         "imprint:contextual",
@@ -174,7 +208,7 @@ fn route_imprint_user(body: String) -> String {
         return "{\"ok\":false,\"error\":\"empty body\"}"
     }
     let tags: String = "[\"imprint\",\"user\"]"
-    let id: String = engram_node_full(
+    let id: String = wt_node(
         body,
         "Entity",
         "imprint:user",
@@ -205,7 +239,7 @@ fn route_synthesize(body: String) -> String {
     }
     let req: String = "synthesize " + parent_a + " " + parent_b
     let tags: String = "[\"soul-inbox-pending\",\"synthesis-request\"]"
-    engram_node_full(
+    wt_node(
         req,
         "Entity",
         "synthesis-request",
@@ -243,8 +277,14 @@ fn handle_dharma_recv(body: String) -> String {
         } else if agentic_flag {
             handle_chat_agentic(chat_body)
         } else {
-            let screened_reply: String = layered_cycle(raw_msg)
-            screened_reply
+            // Non-agentic ("Tools: Off"): the full L1→L2→L3→L1 cycle, which now generates
+            // at L3 instead of echoing. Envelope built outside the cycle — see
+            // plain_chat_envelope.
+            // FIX B/E1 (2026-08-05): the cycle is told which conversation it is in, and
+            // whether this generation is conversation at all. Same two arguments at all
+            // three dispatch sites.
+            let screened_reply: String = layered_cycle(raw_msg, json_get(chat_body, "session_id"), is_utility_request(chat_body, json_get(chat_body, "session_id")))
+            plain_chat_envelope(screened_reply, chat_default_model())
         }
         auto_persist(chat_body, reply)
         return reply
@@ -355,7 +395,28 @@ fn handle_connectors(method: String, clean: String, body: String) -> String {
     return "{\"ok\":false,\"error\":\"unknown connectors route\"}"
 }
 
+// handle_request — the soul's HTTP entry point.
+//
+// NOTE ON THE NAME (neuron#117): the el runtime resolves this handler by NAME
+// via dlsym(RTLD_DEFAULT, "handle_request") — that is why the Linux build must
+// link -rdynamic. So the dispatcher body moved to route_dispatch and the name
+// `handle_request` stays put as a thin wrapper. Do not rename it back.
+//
+// The wrapper exists to give the write-through boundary a guaranteed flush
+// point. route_dispatch returns from ~60 places; a per-branch flush would be
+// forgotten on the 61st. Draining here means EVERY request that staged a write
+// pushes it before the connection closes, whatever route produced it, including
+// routes added later that know nothing about persistence.
+//
+// wt_drain is a no-op (no HTTP, no cost) when nothing is staged and when the
+// soul is not in HTTP-engram mode, so this is free on read traffic.
 fn handle_request(method: String, path: String, body: String) -> String {
+    let resp: String = route_dispatch(method, path, body)
+    let flushed: Int = wt_drain()
+    return resp
+}
+
+fn route_dispatch(method: String, path: String, body: String) -> String {
     let clean: String = strip_query(path)
 
     // ACTIVITY STAMP (2026-07-30 self-review): every inbound HTTP request —
@@ -392,31 +453,29 @@ fn handle_request(method: String, path: String, body: String) -> String {
             return engram_scan_nodes_json(9999, 0)
         }
         if str_eq(clean, "/api/graph/edges") {
-            // A READ ROUTE MUST NEVER WRITE THE CANONICAL SNAPSHOT.
+            // FIXED (neuron#117): this GET used to engram_save() straight over
+            // ~/.neuron/engram/snapshot.json — a READ route, in a process that is
+            // NOT the persistence owner, overwriting the owner's canonical file
+            // on every call. It broke soul.el:571-573 ("the soul must NEVER write
+            // to the local snapshot") and it is the same defect class Will removed
+            // from the engram itself in el `dc39a61` ("stop read routes clobbering
+            // canonical snapshot"), where route_scan_edges/route_sync were moved
+            // to scratch paths for exactly this reason. It was also the race the
+            // old TODO(reliability #8) admitted to.
             //
-            // (2026-08-07 self-review — caught by doing it.) This route used to
-            // serialize to $HOME/.neuron/engram/snapshot.json and read the edges
-            // back out of it. That path is the ENGRAM SERVER's canonical store,
-            // and this is the soul process. One GET here overwrote the durable
-            // graph with the soul's in-memory copy. I triggered it myself this
-            // morning fetching edges for a census: snapshot.json went from the
-            // server's 41,213 edges to the soul's 42,431, and the next engram
-            // restart loaded the soul's graph as canonical. It happened to be a
-            // superset this time — Knowledge 1198→1218, Memory 1238→1242, no
-            // durable type down — so nothing was lost. That was luck, not
-            // design. Had the soul been running a partial load (the exact
-            // failure soul.el's safe_to_seed guard exists to catch), a single
-            // GET would have destroyed the store, and no guard on the write
-            // side would have seen it coming.
-            //
-            // The engram server fixed this same class of bug on 2026-07-21 by
-            // routing exports to a dotted sidecar; the soul kept the original
-            // pattern. Same fix here: write the export where only an export
-            // lives. It also stops a 60MB serialize-and-reread on every GET of
-            // a debug endpoint.
-            let export_path: String = env("HOME") + "/.neuron/engram/.soul-edges-export.json"
-            engram_save(export_path)
-            let snap: String = fs_read(export_path)
+            // Export to a scratch path instead. Same response, no canonical write.
+            // The soul's own snapshot writes are otherwise already gated behind
+            // state key "soul_snapshot_path", which is set ONLY in the genesis
+            // file-mode branch (soul.el: is_genesis && safe_to_seed, and
+            // safe_to_seed is unconditionally false when ENGRAM_URL is set) — so
+            // after this change the soul writes nothing at all in HTTP mode.
+            // Future: add an engram_edges_json() builtin and drop the file round
+            // trip entirely.
+            let scratch_dir: String = env("TMPDIR")
+            let scratch_base: String = if str_eq(scratch_dir, "") { "/tmp" } else { scratch_dir }
+            let snap_path: String = scratch_base + "/soul-edges-export-" + state_get("soul_cgi_id") + ".json"
+            engram_save(snap_path)
+            let snap: String = fs_read(snap_path)
             let edges_raw: String = json_get_raw(snap, "edges")
             return if str_eq(edges_raw, "") { "[]" } else { edges_raw }
         }
@@ -435,8 +494,11 @@ fn handle_request(method: String, path: String, body: String) -> String {
             } else if agentic_flag {
                 handle_chat_agentic(body)
             } else {
-                let screened_reply: String = layered_cycle(eff_msg)
-                screened_reply
+                // Non-agentic ("Tools: Off") — same cycle and same envelope as POST.
+                // FIX B/E1: same threading. A GET probe usually carries no session_id, which
+                // resolves to the anonymous window — the documented behaviour for this door.
+                let screened_reply: String = layered_cycle(eff_msg, json_get(body, "session_id"), is_utility_request(body, json_get(body, "session_id")))
+                plain_chat_envelope(screened_reply, chat_default_model())
             }
             auto_persist(body, reply)
             return reply
@@ -505,6 +567,13 @@ fn handle_request(method: String, path: String, body: String) -> String {
         if str_starts_with(clean, "/api/neuron/graph") {
             return handle_api_inspect_graph(method, path, body)
         }
+        // Stage 1 structural audit (CGI provisional, "Structural audit 430").
+        // GET because it is a read of the graph's own structure; the query string
+        // carries the sample caps (?edge_sample=, ?node_sample=, ?edges=0), so
+        // str_starts_with rather than str_eq.
+        if str_starts_with(clean, "/api/neuron/audit/structural") {
+            return handle_api_structural_audit(method, path, body)
+        }
         if str_starts_with(clean, "/api/neuron/list/") {
             // Offset 17 = len("/api/neuron/list/"). Was 16, which left a leading "/" on node_type
             // ("/BacklogItem"), so engram_scan_nodes_by_type_json matched nothing → list/<type>
@@ -599,8 +668,13 @@ fn handle_request(method: String, path: String, body: String) -> String {
             } else if agentic_flag {
                 handle_chat_agentic(body)
             } else {
-                let screened_reply: String = layered_cycle(raw_msg)
-                screened_reply
+                // Non-agentic ("Tools: Off") — the app's DEFAULT mode (AgentMode.NEVER).
+                // Full L1→L2→L3→L1 cycle with real generation at L3; envelope built
+                // outside the cycle so safety_validate always sees raw text.
+                // FIX B/E1: same threading. This is the app's main plain-chat door, so this
+                // is the site that ends the blank stare in practice.
+                let screened_reply: String = layered_cycle(raw_msg, json_get(body, "session_id"), is_utility_request(body, json_get(body, "session_id")))
+                plain_chat_envelope(screened_reply, chat_default_model())
             }
             auto_persist(body, reply)
             return reply
@@ -681,6 +755,12 @@ fn handle_request(method: String, path: String, body: String) -> String {
         if str_eq(clean, "/api/neuron/graph/link") {
             return handle_api_link_entities(body)
         }
+        // POST accepted too: same handler, so a JSON-RPC-shaped caller that only
+        // speaks POST reaches the identical audit. Options still come from the
+        // query string — the handler reads no body fields.
+        if str_eq(clean, "/api/neuron/audit/structural") {
+            return handle_api_structural_audit(method, path, body)
+        }
         if str_eq(clean, "/api/neuron/memory") {
             return handle_api_remember(body)
         }

routes.elh

@@ -1,5 +1,4 @@
 // auto-generated by elc --emit-header — do not edit
-extern fn flag_true(body: String, key: String) -> Bool
 extern fn rate_limit_check(ip: String, path: String) -> String
 extern fn strip_query(path: String) -> String
 extern fn err_404(path: String) -> String

safety.el

@@ -204,7 +204,7 @@ fn safety_log_bell(level: String, reason: String, input_summary: String) -> Stri
     // Emit a fallback println so the bell event leaves at least a log trace even
     // when engram is degraded. This does not replace engram persistence -- it is a
     // last-resort audit trail when the primary write cannot be confirmed.
-    let node_id: String = engram_node_full(
+    let node_id: String = wt_node(
         content,
         "BellEvent",
         "bell:" + level,

safety.elh

@@ -14,10 +14,6 @@ extern fn safety_abuse_phrases() -> String
 extern fn safety_general_hard_phrases() -> String
 extern fn safety_threat_to_others_phrases() -> String
 extern fn safety_soft_phrases() -> String
-extern fn safety_normalize(message: String) -> String
-extern fn safety_any_match(text: String, phrases_json: String) -> Bool
-extern fn safety_count_match(text: String, phrases_json: String) -> Int
-extern fn safety_positive_phrases() -> String
 extern fn safety_detect_positive_level(message: String) -> String
 extern fn safety_detect_bell_level(message: String) -> String
 extern fn safety_classify_hard_bell(message: String) -> String

scripts/run-el-test.sh

@@ -0,0 +1,108 @@
+#!/usr/bin/env bash
+# run-el-test.sh — compile and run one El test program from tests/.
+#
+# WHY THIS EXISTS (2026-08-07, issue #129):
+#   tests/ has held 14 test programs for months with no way to run them. CI does
+#   not run them. The convention printed in their own headers
+#   (`elc soul.el && ./soul --test tests/x.el`) refers to a --test flag the El
+#   runtime does not implement. So the tests were documentation, not gates —
+#   which is how a P0 safety regression shipped with a test directory present.
+#
+# THE RECIPE, AND WHY IT IS THIS SHAPE:
+#   Same discovery as gen-soul-amalgam.sh — `elc --target=c` emits only an extern
+#   prototype for any module that has a .elh header next to it, and inlines the
+#   module's bodies when it does not. A test that imports ../chat.el therefore
+#   compiles to a 18 KB unit full of unresolved externs unless the headers are
+#   out of the way. So: copy the sources into a scratch tree, delete every .elh
+#   on the import chain, and compile the test there.
+#
+#   Scratch copy on purpose: the worktree is shared with other terminals and
+#   deleting headers in place would be a shared-tree mutation with no owner.
+#
+# EXIT STATUS IS THE GATE: non-zero if the binary fails to build, crashes, or if
+# its output contains a FAIL line or reports a non-zero failed count. Do not
+# "improve" this into something that only checks the exit code of the test
+# binary — these El tests print failures and still exit 0.
+#
+# usage: scripts/run-el-test.sh tests/test_history_amplification.el
+set -euo pipefail
+
+TEST_REL="${1:?usage: run-el-test.sh tests/<test>.el}"
+SRC="$(cd "$(dirname "${BASH_SOURCE[0]}")/.." && pwd)"
+TEST_NAME="$(basename "$TEST_REL" .el)"
+
+ELC="${ELC:-$HOME/neuron-dev-stack/src/el/lang/dist/platform/elc}"
+[ -x "$ELC" ] || ELC="$HOME/el-sdk/elc"
+[ -x "$ELC" ] || { echo "[run-el-test] FAIL: no elc found (set ELC=)"; exit 1; }
+
+RTC="${RTC:-$SRC/vendor/el-runtime/v1.0.0-20260501/el_runtime.c}"
+[ -f "$RTC" ] || RTC="$HOME/el-sdk/el_runtime.c"
+[ -f "$RTC" ] || { echo "[run-el-test] FAIL: no el_runtime.c found (set RTC=)"; exit 1; }
+RTDIR="$(dirname "$RTC")"
+
+EL_REPO="${EL_REPO:-$HOME/Development/neuron-technologies/el}"
+SSL="${SSL_PREFIX:-/opt/homebrew/opt/openssl@3}"
+
+GEN="$(mktemp -d "${TMPDIR:-/tmp}/el-test.XXXXXX")"
+trap 'rm -rf "$GEN"' EXIT
+
+mkdir -p "$GEN/neuron/tests" "$GEN/foundation/el/elp/src"
+cp "$SRC"/*.el "$GEN/neuron/"
+cp "$SRC"/tests/*.el "$GEN/neuron/tests/" 2>/dev/null || true
+[ -d "$EL_REPO/elp/src" ] && cp "$EL_REPO"/elp/src/*.el "$GEN/foundation/el/elp/src/" 2>/dev/null || true
+# The whole recipe depends on there being no headers to short-circuit inlining.
+find "$GEN" -name '*.elh' -delete
+
+echo "[run-el-test] compiling $TEST_REL"
+( cd "$GEN/neuron" && "$ELC" --target=c "tests/${TEST_NAME}.el" ) > "$GEN/${TEST_NAME}.c"
+
+BODIES=$(grep -c '^el_val_t .*) {$' "$GEN/${TEST_NAME}.c" || true)
+echo "[run-el-test] $(wc -c < "$GEN/${TEST_NAME}.c" | tr -d ' ') bytes, ${BODIES} inlined function bodies"
+# A test that imports ../chat.el pulls in the bulk of the engine. A tiny body
+# count means an import was read from a header instead of inlined, and the test
+# would be exercising extern stubs rather than the real code.
+if [ "$BODIES" -lt 100 ]; then
+  echo "[run-el-test] FAIL: only $BODIES inlined bodies — an import was not inlined"
+  exit 1
+fi
+
+cc -O2 -DHAVE_CURL \
+   -I"$RTDIR" -I"$SSL/include" -L"$SSL/lib" \
+   "$GEN/${TEST_NAME}.c" "$RTC" \
+   -lssl -lcrypto -lcurl -lpthread -lm \
+   -o "$GEN/${TEST_NAME}" 2> "$GEN/cc.log" || {
+     echo "[run-el-test] FAIL: compile error"; tail -30 "$GEN/cc.log"; exit 1; }
+
+# arm64 pointer-truncation guard (cc-brain.sh's rule): an implicit declaration of
+# a runtime symbol truncates its returned pointer to 32 bits.
+if grep -E 'implicit.*(engram_|el_)' "$GEN/cc.log"; then
+  echo "[run-el-test] FAIL: implicit declarations of runtime symbols"; exit 1; fi
+
+# Throwaway HOME so a test can never read or write the live engram at ~/.neuron.
+TEST_HOME="$GEN/home"
+mkdir -p "$TEST_HOME"
+
+echo "[run-el-test] running $TEST_NAME"
+set +e
+HOME="$TEST_HOME" NEURON_HOME="$TEST_HOME/.neuron" "$GEN/${TEST_NAME}" 2>&1 | tee "$GEN/out.txt"
+RC=${PIPESTATUS[0]}
+set -e
+
+if [ "$RC" -ne 0 ]; then
+  echo "[run-el-test] FAIL: $TEST_NAME exited $RC (crash or abort)"
+  exit 1
+fi
+if grep -q "  FAIL:" "$GEN/out.txt"; then
+  echo "[run-el-test] FAIL: $TEST_NAME reported failing assertions"
+  exit 1
+fi
+if grep -qE '[1-9][0-9]* failed' "$GEN/out.txt"; then
+  echo "[run-el-test] FAIL: $TEST_NAME reported a non-zero failed count"
+  exit 1
+fi
+if ! grep -q "PASS:" "$GEN/out.txt"; then
+  echo "[run-el-test] FAIL: $TEST_NAME produced no assertions at all"
+  exit 1
+fi
+
+echo "[run-el-test] PASS: $TEST_NAME"

scripts/verify-soul-contract.sh

@@ -0,0 +1,261 @@
+#!/usr/bin/env bash
+# verify-soul-contract.sh — the soul contract gate.
+#
+# TERMINOLOGY (canonical): the ENGRAM is the brain — the memory/knowledge-graph
+# substrate. The binary this gate exercises is the SOUL — the runtime/reasoning
+# engine compiled from dist/soul.c that serves the /api/ surface. The app
+# (neuron-ui) bundles the soul binary at resources/<platform>/neuron.
+#
+# WHY THIS EXISTS
+#   For a while the soul binary was hand-dropped, and a stale one shipped: it
+#   404'd several capability routes the app calls (knowledge-graph node
+#   update/delete, live-run narration, safety-contact, ...). This gate makes
+#   shipping a stale soul IMPOSSIBLE. It has two enforced sections:
+#     A. PRESENCE   — every route the app calls must be ANSWERED (not 404, not
+#                     the el-runtime "no handler"). This is the packaging gate:
+#                     if it fails, do not package.
+#     B. IMMUTABILITY — engram nodes/memories are immutable by design. To
+#                     "update" is to create a NEW node + a supersede EDGE back to
+#                     the original; the original is KEPT. To "delete" is to
+#                     supersede/tombstone, never hard-remove. A soul that
+#                     hard-deletes an engram node is DEFECTIVE and fails the gate.
+#
+# SAFETY
+#   Never touches the live soul (:7770), live engram (:8742), or ~/.neuron.
+#   Boots on a throwaway port (default 7799) with HOME=$(mktemp -d), a throwaway
+#   engram snapshot, a non-genesis cgi id, no ENGRAM_URL (so it uses its own
+#   in-process store, never the live server), NEURON_API_URL pointed at a dead
+#   port, and no ANTHROPIC_API_KEY (so no probe triggers a real LLM call).
+#   Connectors proxy to a HARDCODED 127.0.0.1:7771 (no env override): those
+#   sub-routes are probed with GET, which the soul maps to a read-only
+#   connectd_get, so this gate never writes to a running connectd bridge.
+#
+# USAGE
+#   scripts/verify-soul-contract.sh <path-to-soul-binary> [port]
+#   exit 0 = all required routes answered AND no destructive engram mutation;
+#   non-zero = a route is missing (presence) or a mutation route hard-deletes.
+set -uo pipefail
+
+SOUL="${1:?usage: verify-soul-contract.sh <soul-binary> [port]}"
+PORT="${2:-7799}"
+
+if [ "$PORT" = "7770" ] || [ "$PORT" = "8742" ] || [ "$PORT" = "7771" ]; then
+  echo "REFUSING: port $PORT is a live service port. Use a throwaway port." >&2
+  exit 2
+fi
+if [ ! -x "$SOUL" ]; then echo "not executable: $SOUL" >&2; exit 2; fi
+
+BASE="http://127.0.0.1:$PORT"
+THROW_HOME="$(mktemp -d "${TMPDIR:-/tmp}/soul-contract-home.XXXXXX")"
+SOUL_LOG="$(mktemp "${TMPDIR:-/tmp}/soul-contract-log.XXXXXX")"
+SOUL_PID=""
+cleanup() {
+  [ -n "$SOUL_PID" ] && kill "$SOUL_PID" 2>/dev/null
+  [ -n "$SOUL_PID" ] && { sleep 0.3; kill -9 "$SOUL_PID" 2>/dev/null; }
+  rm -rf "$THROW_HOME" "$SOUL_LOG"
+}
+trap cleanup EXIT INT TERM
+
+# =============================================================================
+# THE CONTRACT — routes the app (neuron-ui/src/main/kotlin/ai/neuron/ui/*.kt)
+# calls against the soul ($SOUL). Format: "METHOD PATH".
+#
+# EXCLUDED and why:
+#   /api/auth, /api/auth/status, /api/dispatch, /api/tasks
+#       -> served by the APP's own DispatchServer.kt (localhost:8080), not the
+#          soul. Not soul routes.
+#   /api/tags
+#       -> not handled by any soul .el (app-side/other). Pre-verified excluded.
+#   /api/neuron/, /api/neuron/node/, /api/connectors/ (bare prefixes)
+#       -> base-path string constants used to build the concrete routes below.
+#
+# KNOWN-PENDING (probed + reported, NON-blocking):
+#   POST /api/engram/import  -> the app's "Restore memory" path. No soul handler
+#       yet, and the app hides Restore from shipped builds (B3, "lands in an
+#       update"). Reported so we see it; does not block packaging.
+#
+# Connectors sub-routes are listed as GET (see SAFETY note): handle_connectors is
+# monolithic, so a GET reaching it proves the whole connectors surface without
+# writing to the live bridge. Binary-strings cross-check confirms each POST
+# sub-path literal is compiled in.
+# =============================================================================
+REQUIRED=(
+  "GET  /api/graph/nodes"
+  "GET  /api/graph/edges"
+  "POST /api/chat"
+  "GET  /api/config"
+  "POST /api/see"
+  "GET  /api/connectors"
+  "GET  /api/connectors/add"
+  "GET  /api/connectors/toggle"
+  "GET  /api/connectors/auto-approve"
+  "GET  /api/connectors/remove"
+  "GET  /api/connectors/secret"
+  "GET  /api/connectors/oauth/start"
+  "GET  /api/connectors/call"
+  "POST /api/neuron/memory"
+  "POST /api/neuron/memory/update"
+  "POST /api/neuron/memory/delete"
+  "POST /api/neuron/node/create"
+  "POST /api/neuron/node/update"
+  "POST /api/neuron/node/delete"
+  "POST /api/neuron/knowledge/capture"
+  "POST /api/neuron/knowledge/evolve"
+  "POST /api/neuron/knowledge/promote"
+  "POST /api/neuron/processes/define"
+  "GET  /api/run-progress/__contract_probe__"
+  "GET  /api/safety-contact"
+  "POST /api/safety-contact"
+  "GET  /api/sessions/__contract_probe__"
+)
+KNOWN_PENDING=(
+  "POST /api/engram/import"
+)
+
+# --- boot the soul -----------------------------------------------------------
+# Preserve the ambient environment (PATH, LD_LIBRARY_PATH, TMPDIR) so the
+# dynamically-linked soul finds its libs on any runner — using `env -i` here
+# stripped the library path on the Linux CI runner and the soul never booted.
+# Isolation is still guaranteed by UNSETTING the live-service vars (so it can
+# never reach the real engram/axon or make an LLM call) and by pointing HOME +
+# the snapshot at throwaway paths and the axon at a dead port.
+#
+# ISOLATION FIX (2026-08-03): unsetting ENGRAM_URL/SOUL_ENGRAM_URL is NOT enough.
+# The periodic engram sync (awareness.el) resolves its source as
+#   env(SOUL_ISE_URL)  ->  state(soul_engram_url)  ->  DEFAULT http://localhost:8742
+# so with those vars unset it silently pulls the LIVE engram (:8742) if that
+# server is up — the throwaway graph ballooned 56 -> 12k live nodes within
+# seconds, and the concurrent live-sync mutation both (a) broke test determinism
+# (the low-salience tombstone marker fell past the 9999 scan cap) and (b) meant
+# the "isolated" gate was reading the operator's live brain. Pin SOUL_ISE_URL to
+# the dead axon port so the sync target is unreachable: the soul stays on its own
+# in-process store, the gate is genuinely isolated, and Section B is deterministic.
+echo "== booting soul: $SOUL on port $PORT (throwaway HOME=$THROW_HOME) =="
+env \
+  -u ENGRAM_URL -u ENGRAM_API_KEY -u SOUL_ENGRAM_URL \
+  -u ANTHROPIC_API_KEY -u NEURON_LLM_API_KEY -u SOUL_IDENTITY \
+  HOME="$THROW_HOME" \
+  NEURON_PORT="$PORT" \
+  SOUL_CGI_ID="ntn-contract-$$" \
+  SOUL_ENGRAM_PATH="$THROW_HOME/throwaway-snapshot.json" \
+  NEURON_API_URL="http://127.0.0.1:9" \
+  SOUL_ISE_URL="http://127.0.0.1:9" \
+  SOUL_TICK_MS="3600000" SOUL_HEARTBEAT_MS="3600000" SOUL_REFRESH_MS="3600000" \
+  "$SOUL" >"$SOUL_LOG" 2>&1 &
+SOUL_PID=$!
+
+UP=0
+for _ in $(seq 1 60); do
+  if ! kill -0 "$SOUL_PID" 2>/dev/null; then
+    echo "!! soul exited during boot. log tail:" >&2; tail -20 "$SOUL_LOG" >&2; exit 3
+  fi
+  RSS=$(ps -o rss= -p "$SOUL_PID" 2>/dev/null | tr -d ' ')
+  if [ -n "$RSS" ] && [ "$RSS" -gt $((3*1024*1024)) ]; then
+    echo "!! soul RSS >3GB — kill -9" >&2; kill -9 "$SOUL_PID" 2>/dev/null; exit 3
+  fi
+  [ "$(curl -s -o /dev/null -w '%{http_code}' -m 2 "$BASE/health" 2>/dev/null)" = "200" ] && { UP=1; break; }
+  sleep 0.5
+done
+[ "$UP" = 1 ] || { echo "!! soul never healthy on $BASE/health" >&2; tail -20 "$SOUL_LOG" >&2; exit 3; }
+echo "== soul healthy =="; echo
+
+# --- probing helpers ---------------------------------------------------------
+# request METHOD PATH [BODY] -> prints response body (single line)
+request() {
+  curl -s -m 12 -X "$1" -H 'Content-Type: application/json' --data "${3:-{}}" "$BASE$2" 2>/dev/null | tr -d '\n'
+}
+# is_missing BODY -> 0 if the body is a "route not present" signal
+is_missing() {
+  printf '%s' "$1" | grep -qE '"error":"not found"|"code":"not_found"|no http handler registered|"code":"method_not_allowed"'
+}
+extract_id() { printf '%s' "$1" | grep -oE '"id":"[^"]+"' | head -1 | sed 's/.*"id":"//;s/"//'; }
+# BY-ID immutability verification (#199 by-id gate).
+# The prior check grepped /api/graph/nodes, i.e. engram_scan_nodes_json(9999,0):
+# a whole-graph dump. On a genesis-seeded throwaway engram that list is both
+# huge (multi-MB, full node content + embeddings) AND capped at 9999 nodes in
+# salience order. The tombstone MARKER is written at salience 0.01, so it sorts
+# dead last — and once the seeded graph approaches/exceeds the cap the marker
+# falls off the end of the list entirely (or is lost to transport truncation on
+# the ~10MB body). The normal-salience original still sorts early and survives,
+# which is why a correctly-tombstoning soul false-reported "kept but no tombstone
+# marker". Fix: verify BY ID via /api/neuron/graph?id=<id>&depth=1
+# (engram_neighbors_json, direction "both"), a compact ~900B neighborhood that is
+# independent of total graph size. The node itself proves KEPT; the incoming
+# "tombstones" edge surfaces the "tombstone:<id>" marker. Pass/fail semantics are
+# unchanged and strictly no weaker: a hard-delete leaves no by-id node (DESTROYED)
+# and a no-op delete leaves no marker (NO-OP) — both still fail. Verified: a
+# never-created id returns neither node nor marker.
+node_present() { # id -> 0 if the node still resolves by-id (KEPT), non-zero if hard-removed
+  request GET "/api/neuron/graph?id=$1&depth=1" | grep -qF "\"$1\""
+}
+
+# --- SECTION A: presence -----------------------------------------------------
+run_presence() {
+  local -n arr=$1; local fail=0
+  printf '  %-8s %-42s %s\n' "METHOD" "ROUTE" "RESULT"
+  for e in "${arr[@]}"; do
+    local m p body; m=$(awk '{print $1}' <<<"$e"); p=$(awk '{print $2}' <<<"$e")
+    body=$(request "$m" "$p")
+    if is_missing "$body"; then
+      printf '  %-8s %-42s MISSING  %s\n' "$m" "$p" "$(cut -c1-46 <<<"$body")"; fail=$((fail+1))
+    else
+      printf '  %-8s %-42s ANSWERED %s\n' "$m" "$p" "$(cut -c1-46 <<<"$body")"
+    fi
+  done
+  return $fail
+}
+
+echo "== SECTION A: PRESENCE (required, blocking) =="
+run_presence REQUIRED; A_FAIL=$?
+echo
+echo "== KNOWN-PENDING (non-blocking) =="
+run_presence KNOWN_PENDING; P_FAIL=$?
+echo
+
+# --- SECTION B: immutability (engram write routes must supersede, not destroy) --
+# For each mutation route: create a node, mutate it, then check the ORIGINAL id
+# still exists in the graph. KEPT = supersede/tombstone (correct). DESTROYED =
+# hard delete (DEFECTIVE -> fail). N/A = mutate route absent (a presence failure).
+# For "delete" mutations we additionally require a real tombstone marker
+# (label "tombstone:<id>") so a no-op delete cannot false-pass as KEPT.
+marker_present() { # id -> 0 if a "tombstone:<id>" marker is wired to the node (by-id neighborhood)
+  request GET "/api/neuron/graph?id=$1&depth=1" | grep -qF "tombstone:$1"
+}
+immut_check() { # label KIND(update|delete) CREATE_PATH MUTATE_PATH
+  local label="$1" kind="$2" create="$3" mutate="$4"
+  local cbody id mb mbody
+  cbody=$(request POST "$create" "{\"content\":\"__immut_${label}__\",\"node_type\":\"Memory\",\"label\":\"contract:immut\"}")
+  id=$(extract_id "$cbody")
+  if [ -z "$id" ]; then printf '  %-14s SKELETON-FAIL  create returned no id: %s\n' "$label" "$(cut -c1-40 <<<"$cbody")"; return 2; fi
+  mb="{\"id\":\"$id\"}"; [ "$kind" = update ] && mb="{\"id\":\"$id\",\"content\":\"__immut_${label}_v2__\"}"
+  mbody=$(request POST "$mutate" "$mb")
+  if is_missing "$mbody"; then printf '  %-14s N/A            mutate route absent (see Section A)\n' "$label"; return 0; fi
+  if ! node_present "$id"; then
+    printf '  %-14s DESTROYED      original %s hard-removed  <== DEFECTIVE\n' "$label" "$id"; return 1
+  fi
+  if [ "$kind" = delete ] && ! marker_present "$id"; then
+    printf '  %-14s NO-OP          original %s kept but no tombstone marker  <== DEFECTIVE\n' "$label" "$id"; return 1
+  fi
+  local how="supersede edge"; [ "$kind" = delete ] && how="tombstoned + hidden from default list"
+  printf '  %-14s KEPT           original %s survived (%s)\n' "$label" "$id" "$how"; return 0
+}
+
+echo "== SECTION B: IMMUTABILITY (engram nodes must be superseded, never destroyed) =="
+B_FAIL=0
+immut_check "memory-update" update /api/neuron/memory      /api/neuron/memory/update || B_FAIL=$((B_FAIL+$?))
+immut_check "memory-delete" delete /api/neuron/memory      /api/neuron/memory/delete || B_FAIL=$((B_FAIL+$?))
+immut_check "node-update"   update /api/neuron/node/create /api/neuron/node/update   || B_FAIL=$((B_FAIL+$?))
+immut_check "node-delete"   delete /api/neuron/node/create /api/neuron/node/delete   || B_FAIL=$((B_FAIL+$?))
+immut_check "memory-forget" delete /api/neuron/memory      /api/neuron/memory/forget || B_FAIL=$((B_FAIL+$?))
+echo
+
+echo "============================================================"
+RC=0
+if [ "$A_FAIL" -gt 0 ]; then echo "PRESENCE:   FAIL — $A_FAIL required route(s) unanswered. Do NOT package."; RC=1
+  else echo "PRESENCE:   PASS — all ${#REQUIRED[@]} required routes answered."; fi
+if [ "$B_FAIL" -gt 0 ]; then echo "IMMUTABILITY: FAIL — $B_FAIL engram write route(s) hard-delete. DEFECTIVE soul."; RC=1
+  else echo "IMMUTABILITY: PASS — no engram write route hard-deletes."; fi
+[ "$P_FAIL" -gt 0 ] && echo "note: $P_FAIL known-pending route(s) unanswered (expected; non-blocking)."
+echo "============================================================"
+[ "$RC" = 0 ] && echo "GATE: PASS" || echo "GATE: FAIL"
+exit $RC

sessions.el

@@ -87,7 +87,7 @@ fn session_create(body: String) -> String {
     let folder: String = json_get(body, "folder")
     let content: String = session_make_content(id, title, ts, ts, folder)
     let tags: String = "[\"session\",\"session:meta\",\"Conversation\"]"
-    let node_id: String = engram_node_full(
+    let node_id: String = wt_node(
         content, "Conversation", "session:meta",
         el_from_float(0.7), el_from_float(0.7), el_from_float(0.9),
         "Episodic", tags
@@ -358,7 +358,7 @@ fn session_update_patch(session_id: String, body: String) -> String {
     let created_int: Int = str_to_int(old_created)
     let new_content: String = session_make_content(session_id, eff_title, created_int, ts, eff_folder)
     let tags: String = "[\"session\",\"session:meta\",\"Conversation\"]"
-    let new_node_id: String = engram_node_full(
+    let new_node_id: String = wt_node(
         new_content, "Conversation", "session:meta",
         el_from_float(0.7), el_from_float(0.7), el_from_float(0.9),
         "Episodic", tags
@@ -456,7 +456,7 @@ fn session_hist_save(session_id: String, hist: String) -> Void {
     // TODO(reliability #7): delete-then-insert is not atomic — concurrent saves for the
     // same session can produce orphan history nodes. State is primary truth; engram fallback.
     let tags: String = "[\"session\",\"session-history\",\"Conversation\"]"
-    let discard: String = engram_node_full(
+    let discard: String = wt_node(
         hist, "Conversation", "session:messages:" + session_id,
         el_from_float(0.6), el_from_float(0.6), el_from_float(0.9),
         "Episodic", tags
@@ -488,7 +488,7 @@ fn session_hist_save(session_id: String, hist: String) -> Void {
                 + " | ts:" + int_to_str(ts_now)
             let summary_tags: String = "[\"session-emotional-summary\",\"affective\",\"bell:" + eff_level + "\",\"BellEvent\"]"
             let summary_sal: String = if str_eq(eff_level, "hard") { el_from_float(0.95) } else { el_from_float(0.85) }
-            let sum_discard: String = engram_node_full(
+            let sum_discard: String = wt_node(
                 summary_content,
                 "BellEvent",
                 "session:emotional-summary",
@@ -529,7 +529,7 @@ fn session_hist_save(session_id: String, hist: String) -> Void {
             if !str_eq(ot_id, "") { engram_forget(ot_id) }
             let oti = oti + 1
         }
-        let discard_topic: String = engram_node_full(
+        let discard_topic: String = wt_node(
             topic_content, "Conversation", topic_label,
             el_from_float(0.7), el_from_float(0.7), el_from_float(0.9),
             "Episodic", topic_tags
@@ -582,7 +582,7 @@ fn session_update_meta_timestamp(session_id: String) -> Void {
     let created_int: Int = str_to_int(old_created)
     let new_content: String = session_make_content(session_id, old_title, created_int, ts, old_folder)
     let tags: String = "[\"session\",\"session:meta\",\"Conversation\"]"
-    let new_id: String = engram_node_full(
+    let new_id: String = wt_node(
         new_content, "Conversation", "session:meta",
         el_from_float(0.7), el_from_float(0.7), el_from_float(0.9),
         "Episodic", tags
@@ -629,7 +629,7 @@ fn session_auto_title(session_id: String, first_message: String) -> Void {
     let created_int: Int = str_to_int(old_created)
     let new_content: String = session_make_content(session_id, new_title, created_int, ts, old_folder)
     let tags: String = "[\"session\",\"session:meta\",\"Conversation\"]"
-    let new_id: String = engram_node_full(
+    let new_id: String = wt_node(
         new_content, "Conversation", "session:meta",
         el_from_float(0.7), el_from_float(0.7), el_from_float(0.9),
         "Episodic", tags
@@ -677,6 +677,11 @@ fn handle_session_approve(session_id: String, body: String) -> String {
     // path for all sessions created through handle_chat_agentic / agentic_loop.
     let bridge_blob: String = state_get("mcp_bridge:" + session_id)
     if !str_eq(bridge_blob, "") {
+        // BUG-LEAK fix (2026-07-16): the approved tool executes below via dispatch_tool,
+        // whose path/command guards read the shared workspace-root key. Re-assert THIS
+        // session's own root first — an approval must never execute under whatever root
+        // the last unrelated request left behind.
+        state_set("agent_workspace_root", state_get("agent_workspace_root_" + session_id))
         // For "always": record tool_name in the always-allow list before resuming.
         // The tool_name is not stored in the bridge blob (only tool_use_id is).
         // Accept it from the body so the client can pass it along.
@@ -708,7 +713,13 @@ fn handle_session_approve(session_id: String, body: String) -> String {
         // For builtin tools with no client-provided content: fall back to
         // dispatch_tool so those tools still execute correctly.
         let client_content: String = json_get(body, "content")
-        let use_client_content: Bool = !str_eq(client_content, "")
+        // BUG-6 fix (2026-07-17): the naive json_get scanner matches "content" ANYWHERE
+        // in the body — including INSIDE tool_input — so every approved write_file (whose
+        // input always carries a content field) was mistaken for client-executed, never
+        // dispatched, and narrated as done: a false receipt with no file on disk. Builtin
+        // tools now ALWAYS dispatch server-side; client content is only honored for
+        // non-builtin (MCP/client-executed) tools. Stricter only.
+        let use_client_content: Bool = !str_eq(client_content, "") && !is_builtin_tool(approve_tool_name)
         let use_dispatch: Bool = is_builtin_tool(approve_tool_name) && !use_client_content
         let raw_input: String = json_get_raw(body, "tool_input")
         let eff_input: String = if str_eq(raw_input, "") { "{}" } else { raw_input }

sessions.elh

@@ -12,6 +12,3 @@ extern fn session_search_entry(node: String) -> String
 extern fn session_search(query: String) -> String
 extern fn session_hist_load(session_id: String) -> String
 extern fn session_hist_save(session_id: String, hist: String) -> Void
-extern fn session_update_meta_timestamp(session_id: String) -> Void
-extern fn session_auto_title(session_id: String, first_message: String) -> Void
-extern fn handle_session_approve(session_id: String, body: String) -> String

soul.el

@@ -379,9 +379,23 @@ fn emit_session_start_event() -> Void {
 // layered_cycle — routes user-facing requests through the 4-layer consciousness stack.
 // L0 (core) → L1 (safety screen) → L2a (continuity + behavioral profiling) → L2b (mission alignment) → L3 (imprint) → L1 (safety validate)
 // Internal cognition (heartbeat, proactive, memory ops) bypasses layers — use one_cycle directly.
-fn layered_cycle(raw_input: String) -> String {
-    let history: String = state_get("conv_history")
-    let session_id: String = state_get("current_session_id")
+//
+// FIX B (2026-08-05) — the cycle now knows which conversation it is in.
+//
+// session_id: the caller's session, threaded from the route. Was previously read from the
+// state key "current_session_id", which is read HERE and written NOWHERE in the entire
+// source — verified across every .el file. So this value was unconditionally "", and every
+// downstream consumer of it silently fell back to a process-global bucket: conversation
+// history, and the steward's continuity tracking (TODO reliability #4, below, describes the
+// cross-session bleed this caused; threading the real id closes it). The plain path's blank
+// stare and the agentic path's scoped history were the same defect seen from two sides.
+//
+// utility: true when the generation is not part of the user's conversation — the app's
+// title and insight passes. Answered normally, never recorded. See is_utility_request.
+fn layered_cycle(raw_input: String, session_id: String, utility: Bool) -> String {
+    // Safety-screen history amplification now reads the SAME window the turn will be
+    // recorded into, so a session's own escalation pattern is what gets scored.
+    let history: String = state_get(conv_hist_key(session_id))
 
     // L1 in: safety screen
     let screen_result: String = safety_screen(raw_input, history)
@@ -423,8 +437,10 @@ fn layered_cycle(raw_input: String) -> String {
     let cont_action: String = json_get(continuity, "action")
 
     // Store continuity status so imprint can adjust its response register.
-    // TODO(reliability #4): session_continuity is process-global; scope per session_id
-    // when available to prevent cross-session bleed under concurrent layered_cycle calls.
+    // TODO(reliability #4) CLOSED 2026-08-05: this line was already written to scope per
+    // session — it just never received a session id, because the only source was a state key
+    // nothing wrote. It is now threaded from the route, so named sessions genuinely get their
+    // own continuity state and only anonymous callers share the global one.
     let cont_key: String = if str_eq(session_id, "") { "session_continuity" } else { "session_continuity:" + session_id }
     state_set(cont_key, cont_status)
 
@@ -453,40 +469,24 @@ fn layered_cycle(raw_input: String) -> String {
     let lc_aff_cutoff: Int = time_now() - 259200
     let lc_bell_nodes: String = engram_search_json("bell:soft bell:hard BellEvent affective", 2)
     let lc_has_bell: Bool = !str_eq(lc_bell_nodes, "") && !str_eq(lc_bell_nodes, "[]")
+    // CRASH FIX 2026-08-05 (BUG-PLAINCHAT-1): the " | ts:" parser used to be inline here.
+    // Inside this block-expression initializer elc compiled `lbmp + str_len(lbm)` to
+    // el_str_concat() on two integers, which segfaulted the whole daemon the moment a
+    // distress turn followed an earlier affective turn — i.e. exactly on the crisis path.
+    // Verified against the unmodified baseline binary AND present in the committed
+    // dist/soul.c. affective_node_ts() is a top-level function, where the same expression
+    // compiles to integer addition. Do not inline it back.
     let lc_bell_note: String = if lc_has_bell {
         let lb0: String = json_array_get(lc_bell_nodes, 0)
-        let lb_c: String = json_get(lb0, "content")
-        let lbm: String = " | ts:"
-        let lbmp: Int = str_index_of(lb_c, lbm)
-        let lb_ts_raw: String = if lbmp >= 0 {
-            let lbs: Int = lbmp + str_len(lbm)
-            let lbr: String = str_slice(lb_c, lbs, str_len(lb_c))
-            let lbn: Int = str_index_of(lbr, " | ")
-            if lbn < 0 { lbr } else { str_slice(lbr, 0, lbn) }
-        } else {
-            let lbca: String = json_get(lb0, "created_at")
-            if str_eq(lbca, "") { json_get(lb0, "updated_at") } else { lbca }
-        }
-        let lb_ts: Int = if str_eq(lb_ts_raw, "") { 0 } else { str_to_int(lb_ts_raw) }
+        let lb_ts: Int = affective_node_ts(lb0)
         if lb_ts > lc_aff_cutoff { "[AFFECTIVE NOTE: User was in distress in a recent session.]" } else { "" }
     } else { "" }
     let lc_pos_nodes: String = engram_search_json("PositiveEvent joy:high joy:low affective", 2)
     let lc_has_pos: Bool = !str_eq(lc_pos_nodes, "") && !str_eq(lc_pos_nodes, "[]")
+    // Same crash fix as the bell note above (BUG-PLAINCHAT-1).
     let lc_pos_note: String = if lc_has_pos && str_eq(lc_bell_note, "") {
         let lp0: String = json_array_get(lc_pos_nodes, 0)
-        let lp_c: String = json_get(lp0, "content")
-        let lpm: String = " | ts:"
-        let lpmp: Int = str_index_of(lp_c, lpm)
-        let lp_ts_raw: String = if lpmp >= 0 {
-            let lps: Int = lpmp + str_len(lpm)
-            let lpr: String = str_slice(lp_c, lps, str_len(lp_c))
-            let lpn: Int = str_index_of(lpr, " | ")
-            if lpn < 0 { lpr } else { str_slice(lpr, 0, lpn) }
-        } else {
-            let lpca: String = json_get(lp0, "created_at")
-            if str_eq(lpca, "") { json_get(lp0, "updated_at") } else { lpca }
-        }
-        let lp_ts: Int = if str_eq(lp_ts_raw, "") { 0 } else { str_to_int(lp_ts_raw) }
+        let lp_ts: Int = affective_node_ts(lp0)
         if lp_ts > lc_aff_cutoff { "[AFFECTIVE NOTE: User shared positive news in a recent session.]" } else { "" }
     } else { "" }
     let lc_affective_note: String = if !str_eq(lc_bell_note, "") { lc_bell_note } else { lc_pos_note }
@@ -498,11 +498,47 @@ fn layered_cycle(raw_input: String) -> String {
     }
     state_set("layered_cycle_safety_system_addendum", augmented_addendum)
 
-    // L3: imprint responds
-    let output: String = imprint_respond(aligned, imprint_id)
+    // L3: imprint responds — applies the active imprint's voice/domain annotation to the
+    // steward-aligned input. This produces the PROMPT, not the answer.
+    let prompt: String = imprint_respond(aligned, imprint_id)
 
-    // L1 out: validate output before delivery
-    return safety_validate(output, screen_action)
+    // L3b: the imprint SPEAKS (added 2026-08-05).
+    //
+    // Until now the cycle stopped at the annotation above, so /api/chat with agentic:false
+    // handed the user's own screened text back as the "reply" — every gate ran, but nothing
+    // ever generated. The generation is placed HERE, inside the cycle, rather than by
+    // pointing the route at handle_chat(): handle_chat has no enforcing input gate and no
+    // enforcing output gate, so calling it instead of this cycle would have traded the whole
+    // safety pipeline for a working reply. Composing keeps both.
+    //
+    // Order is deliberate and must not be rearranged: this call sits strictly AFTER the L1
+    // screen, the safe-mode guard, the hard-bell short-circuit and the L2 stewardship layers,
+    // and strictly BEFORE the L1 output gate. A hard bell never reaches a model — the branch
+    // above returns first. Tools are not offered on this turn; see layered_generate.
+    let output: String = layered_generate(prompt, imprint_id, session_id)
+
+    // L1 out: validate output before delivery. Still the terminal gate — nothing below this
+    // line can change the string this function returns.
+    let validated: String = safety_validate(output, screen_action)
+
+    // Turn bookkeeping. Records the VALIDATED text, never the raw model output, and is only
+    // reachable on the non-bell path: both bell branches above return before this point, so
+    // bell turns still never enter conversation history. Pure state side effect — it cannot
+    // alter what is returned.
+    //
+    // FIX A: the receipt is unconditional and always negative on this path, because on this
+    // path it is structurally true — layered_generate offers no tools at all (build_system_prompt
+    // chat mode + a request body with no "tools" key). Recording "no tools ran" is not padding:
+    // it is the only thing that distinguishes "nothing ran" from "we forgot to write down what
+    // ran", and that ambiguity is what made the model confess to a search it had performed.
+    //
+    // FIX E1: a utility generation is answered but not recorded. Guarded here rather than at
+    // the route so every /api/chat dispatch site inherits it from one place.
+    let receipt: String = tool_receipt("", "")
+    if !utility {
+        conv_history_record(session_id, raw_input, validated, receipt)
+    }
+    return validated
 }
 
 let soul_cgi_id_raw: String = env("SOUL_CGI_ID")
@@ -521,7 +557,28 @@ let axon_raw: String = env("NEURON_API_URL")
 let axon_base: String = if str_eq(axon_raw, "") { "http://localhost:7771" } else { axon_raw }
 
 let studio_dir_raw: String = env("SOUL_STUDIO_DIR")
-let studio_dir: String = if str_eq(studio_dir_raw, "") { "/Users/will/Development/neuron-technologies/products/cgi-studio/el-daemon" } else { studio_dir_raw }
+let studio_dir: String = if str_eq(studio_dir_raw, "") { env("HOME") + "/Development/neuron-technologies/products/cgi-studio/el-daemon" } else { studio_dir_raw }
+
+// RESTORED 2026-08-09 — this producer was added 2026-05-02 in 601e0fe and deleted
+// by the awareness refactor b163fa6 a few days later. Nothing has written
+// soul_identity since, while FIVE sites in chat.el kept reading it:
+//   chat.el:737, 1745, 2620, 3425, 3480 — each doing state_get("soul_identity")
+// and splicing the result into the system prompt beside the voice, security and
+// capability rules. They have been splicing an EMPTY STRING for roughly three
+// months. The identity section of every chat turn was blank and nothing said so.
+//
+// Found by the #132 state-key gate, which reports a read with no producer as a
+// build error rather than a silence — the whole reason that gate exists.
+//
+// Restored verbatim rather than improved: this key is an env-configurable persona
+// LINE, which is NOT the same thing as soul_identity_context (the graph-derived
+// [INTELLECTUAL-DNA]/[VALUES]/[MEMORY-PHILOSOPHY] block written at soul.el:184).
+// Pointing these five reads at that block instead would have substituted different
+// content and called it a fix. Whether the chat system prompt should ALSO carry the
+// graph-derived block is a real question, and a separate one.
+let identity_raw: String = env("SOUL_IDENTITY")
+let soul_identity: String = if str_eq(identity_raw, "") { "You are " + soul_cgi_id + ", a CGI." } else { identity_raw }
+state_set("soul_identity", soul_identity)
 
 println("[soul] boot - cgi=" + soul_cgi_id + " port=" + int_to_str(port))
 
@@ -621,6 +678,23 @@ if is_genesis && safe_to_seed {
     }
 }
 
+// CRASH RECOVERY (neuron#117). Deltas the previous process staged but could not
+// hand to the owner are still on disk — the spool is a filesystem queue, not a
+// memory buffer, precisely so that a soul that died mid-flight does not take its
+// unpushed writes with it. Drain them before serving, so recovered memories are
+// durable and recallable from the owner from the first request onward.
+//
+// Safe on a clean boot: an empty spool means no HTTP call at all. Safe in file
+// mode: wt_drain returns immediately when ENGRAM_URL is unset.
+let wt_recovered: Int = wt_drain()
+if wt_recovered > 0 {
+    println("[soul] write-through: recovered " + int_to_str(wt_recovered)
+        + " nodes from a previous process's spool -> persistence owner")
+}
+if wt_recovered < 0 {
+    println("[soul] write-through: spool present but the persistence owner is unreachable — queued, will retry on heartbeat")
+}
+
 println("[soul] serving on port " + int_to_str(port))
 http_serve_async(port, "handle_request")
 println("[soul] awareness loop starting")

soul.elh

@@ -1,8 +1,8 @@
-// auto-generated by elc --emit-header — do not edit
+// auto-generated by elc --emit-header - do not edit
 extern fn init_soul_edges() -> Void
 extern fn ensure_self_canonical_bridge() -> Void
 extern fn aff_try_slot(slot_json: String, aff_7d_ts: Int, acc_key: String) -> Void
 extern fn load_identity_context() -> Void
 extern fn seed_persona_from_env() -> Void
 extern fn emit_session_start_event() -> Void
-extern fn layered_cycle(raw_input: String) -> String
+extern fn layered_cycle(raw_input: String, session_id: String, utility: Bool) -> String

stewardship.el

@@ -11,7 +11,7 @@ import "memory.el"
 fn steward_log_event(kind: String, detail: String) -> Void {
     let content: String = "STEWARD:" + kind + " | " + detail
     let tags: String = "[\"stewardship\",\"steward:" + kind + "\"]"
-    let discard: String = engram_node_full(
+    let discard: String = wt_node(
         content,
         "StewardshipEvent",
         "steward:" + kind,
@@ -221,7 +221,7 @@ fn steward_fingerprint_session(input: String, session_id: String) -> String {
         + " formality=" + fs_str
         + " time=" + tb_str
     let sample_tags: String = "[\"behavior\",\"BehaviorSample\",\"stewardship\"]"
-    let discard: String = engram_node_full(
+    let discard: String = wt_node(
         sample_content,
         "BehaviorSample",
         "behavior:" + session_id,

tests/test_history_amplification.el

@@ -0,0 +1,213 @@
+// ── test_history_amplification.el ─────────────────────────────────────────────
+//
+// REGRESSION TEST FOR ISSUE #129 (P0, SAFETY).
+//
+// What this guards: on the agentic path, the crisis score has two halves — the
+// message you just sent, and the distress that has accumulated across the
+// conversation. The second half is the whole reason the escalation logic exists:
+// someone whose distress builds over several turns never sends one message that
+// trips the bell on its own.
+//
+// The defect this test was written against (ff421d3, 2026-08-05 → fixed
+// 2026-08-07): conversation history moved to a per-session key via
+// conv_hist_key(session_id), but the agentic path's safety screen was left
+// reading the old anonymous "conv_history" bucket. The desktop app always sends
+// a session_id, so the screen received "" on every real conversation and the
+// escalation half always scored 0. Nothing failed. Nothing logged. The comment
+// above the defective line documented this same bug being fixed once before.
+//
+// THE INVARIANT UNDER TEST, stated so it survives future renames:
+//   the window the safety screen READS must be the window conv_history_record
+//   WRITES. Not "must be called conv_history" — must AGREE.
+//
+// This test is deliberately written to fail loudly on the pre-fix source. If it
+// ever passes on code where the screen reads a key nothing writes, it is broken.
+//
+// To run (macOS, from the worktree root):
+//   scripts/run-el-test.sh tests/test_history_amplification.el
+// ──────────────────────────────────────────────────────────────────────────────
+
+import "../chat.el"
+import "../safety.el"
+import "../sessions.el"
+
+// Program class. Without this an El program compiles as a 'utility', and a
+// utility may not call the self-formation primitives (llm_call_system,
+// llm_vision) that chat.el's agentic loop references — the unit fails to
+// compile with a capability violation even though the test never calls them.
+// Declaring 'cgi' matches how soul.el declares itself.
+//
+// The endpoints below are deliberately DEAD: this test must never reach a live
+// engram, and nothing it asserts depends on one. Port 9 is discard.
+cgi "neuron-test-history-amplification" {
+    dharma_id: "ntn-test@http://127.0.0.1:9",
+    principal: "test-harness",
+    network:   "dharma-testnet",
+    engram:    "http://127.0.0.1:9"
+}
+
+// ── Counters ──────────────────────────────────────────────────────────────────
+//
+// NOTE for anyone copying this harness: the idiom used by the older tests in
+// this directory — `let pass_count = pass_count + 1` inside an assert function —
+// does NOT mutate the module-level binding. It declares a new local that dies
+// with the call, so those suites all print "0 passed, 0 failed" no matter what
+// happened. Counters go through the state store here so the summary is real.
+
+fn bump(counter: String) -> Void {
+    let cur: String = state_get(counter)
+    let n: Int = if str_eq(cur, "") { 0 } else { str_to_int(cur) }
+    state_set(counter, int_to_str(n + 1))
+}
+
+fn counter_of(counter: String) -> Int {
+    let cur: String = state_get(counter)
+    if str_eq(cur, "") { return 0 }
+    return str_to_int(cur)
+}
+
+fn assert_eq(label: String, got: String, expected: String) -> Void {
+    if str_eq(got, expected) {
+        bump("t_pass")
+        println("  PASS: " + label)
+    } else {
+        bump("t_fail")
+        println("  FAIL: " + label)
+        println("    got:      " + got)
+        println("    expected: " + expected)
+    }
+}
+
+fn assert_true(label: String, cond: Bool) -> Void {
+    if cond {
+        bump("t_pass")
+        println("  PASS: " + label)
+    } else {
+        bump("t_fail")
+        println("  FAIL: " + label)
+    }
+}
+
+// ── Fixtures ──────────────────────────────────────────────────────────────────
+//
+// ESCALATION_MSG scores 50 on its own ("can't go on", safety_score_crisis s9).
+// 50 is >= soft (35) and < hard (70): a soft bell by itself, which is the point.
+// It is the message that is only a crisis IN CONTEXT.
+//
+// DISTRESS_TURN carries five history phrases:
+//   hopeless 15 + worthless 15 + nobody cares 15 + can't take it anymore 20
+//   + want to disappear 20 = 85; contributed at 1/3 weight = 28.
+// 50 + 28 = 78 >= 70 → hard_bell. That 28-point swing IS the escalation logic,
+// and it is exactly what the defect suppressed.
+
+let TEST_SESSION: String = "sess-test-129-history-amplification"
+let ESCALATION_MSG: String = "honestly i can't go on like this"
+let DISTRESS_TURN: String = "i feel hopeless and worthless, nobody cares, i can't take it anymore, i want to disappear"
+
+println("")
+println("test_history_amplification.el — issue #129 (agentic multi-turn crisis escalation)")
+
+// ── 1. Baseline: the message alone is a SOFT bell, not a hard one ─────────────
+//
+// If this ever returns hard_bell, the test below proves nothing — the message
+// would trip the bell without any history and the amplification would be
+// invisible. This assertion is what keeps the real test honest.
+
+println("")
+println("1. baseline — escalation message with NO history is a soft bell")
+
+let baseline: String = safety_screen(ESCALATION_MSG, "")
+assert_eq("no history -> soft_bell (not hard)", json_get(baseline, "action"), "soft_bell")
+
+// ── 2. Producer sanity: history lands in the session's own window ─────────────
+
+println("")
+println("2. producer — conv_history_record writes the session's window")
+
+conv_history_record(TEST_SESSION, DISTRESS_TURN, "i hear you, that sounds heavy", "")
+
+let written: String = state_get(conv_hist_key(TEST_SESSION))
+assert_true("session window is non-empty after record", !str_eq(written, ""))
+assert_true("session window contains the distress turn", str_contains(written, "hopeless"))
+
+// ── 3. THE REGRESSION: the agentic screen must SEE that window ────────────────
+//
+// Pre-fix this returns soft_bell, because agentic_safety_screen read the
+// anonymous bucket and got "". Post-fix it returns hard_bell.
+
+println("")
+println("3. REGRESSION #129 — agentic screen reads the session's own window")
+
+let screened: String = agentic_safety_screen(TEST_SESSION, ESCALATION_MSG)
+assert_eq(
+    "distress history escalates the agentic screen to hard_bell",
+    json_get(screened, "action"),
+    "hard_bell"
+)
+
+// ── 4. The invariant, stated directly ─────────────────────────────────────────
+//
+// Independent of thresholds and phrase lists: whatever the screen reads for a
+// session must equal what the recorder wrote for that session. This is the
+// assertion that survives a future rename of either side.
+
+println("")
+println("4. invariant — read window == written window")
+
+let read_back: String = state_get(conv_hist_key(TEST_SESSION))
+assert_true("screen input is the recorded window, not empty", !str_eq(read_back, ""))
+assert_eq("read window is byte-identical to written window", read_back, written)
+
+// ── 5. No false positive: a calm session does not escalate ────────────────────
+//
+// A test that only ever asserts "hard_bell" would pass on code that hard-bells
+// every message. This is the other leg, and it runs BEFORE the anonymous case
+// below on purpose: that case writes the shared bucket, and under the defect a
+// calm session would then inherit it.
+
+println("")
+println("5. specificity — a calm history does NOT escalate")
+
+let CALM_SESSION: String = "sess-test-129-calm"
+state_set("conv_history", "")
+conv_history_record(CALM_SESSION, "what is the weather like today", "clear and mild", "")
+let calm: String = agentic_safety_screen(CALM_SESSION, ESCALATION_MSG)
+assert_eq("calm history stays at soft_bell", json_get(calm, "action"), "soft_bell")
+
+// ── 6. Cross-session leakage ──────────────────────────────────────────────────
+//
+// The same defect had a second face: because the screen read one shared bucket,
+// a calm session could be scored against a DIFFERENT session's distress. That is
+// wrong in both directions — it fabricates a crisis for the calm user and it
+// leaks the distressed user's content into another session's scoring.
+
+println("")
+println("6. isolation — one session's distress must not score another session")
+
+state_set("conv_history", "")
+let OTHER_SESSION: String = "sess-test-129-other"
+conv_history_record(OTHER_SESSION, DISTRESS_TURN, "i hear you", "")
+let isolated: String = agentic_safety_screen(CALM_SESSION, ESCALATION_MSG)
+assert_eq(
+    "a distressed OTHER session does not escalate the calm session",
+    json_get(isolated, "action"),
+    "soft_bell"
+)
+
+// ── 7. Anonymous sessions still work ──────────────────────────────────────────
+//
+// conv_hist_key("") deliberately falls back to the shared "conv_history" bucket.
+// The fix must not break the no-session_id path older callers rely on. Runs last
+// because it writes that shared bucket.
+
+println("")
+println("7. anonymous path — empty session_id still screens against the shared window")
+
+state_set("conv_history", "[{\"role\":\"user\",\"content\":\"" + DISTRESS_TURN + "\"}]")
+let anon: String = agentic_safety_screen("", ESCALATION_MSG)
+assert_eq("anonymous session escalates too", json_get(anon, "action"), "hard_bell")
+
+// ── Summary ───────────────────────────────────────────────────────────────────
+
+println("")
+println("history amplification tests: " + int_to_str(counter_of("t_pass")) + " passed, " + int_to_str(counter_of("t_fail")) + " failed")

tools/build-soul-from-dist.sh

@@ -0,0 +1,59 @@
+#!/usr/bin/env bash
+# build-soul-from-dist.sh — build a deployable soul from the SAME input CI compiles.
+#
+# THE PROBLEM THIS CLOSES: until now, deploys were built by build-soul.sh, which
+# compiles a scratch amalgam and never touches dist/soul.c. CI compiles dist/soul.c.
+# Two lineages. On 2026-08-09 the committed input fell 2,761 bytes behind the sources
+# while three binaries built the other way were installed on the operator machine —
+# so "what runs" and "what the repo says builds" were different artifacts again,
+# which is the whole of #133 and #111 wearing new clothes.
+#
+# This builds from dist/soul.c with CI's own flags, after asserting that dist/soul.c
+# actually matches the .el sources, and writes a provenance sidecar so a deployer can
+# refuse anything of unknown origin.
+#
+# -rdynamic and -DHAVE_CURL are copied from .gitea/workflows/ci.yaml deliberately.
+# The CI comment explains -rdynamic: without it the runtime cannot resolve its HTTP
+# handler by name via dlsym and the binary serves nothing on every route.
+#
+# usage: build-soul-from-dist.sh <out-binary>
+set -u
+OUT="${1:?usage: build-soul-from-dist.sh <out-binary>}"
+ROOT="$(cd "$(dirname "${BASH_SOURCE[0]}")/.." && pwd)"
+RUNTIME="$ROOT/vendor/el-runtime/v1.0.0-20260501"
+
+cd "$ROOT" || exit 2
+
+echo "[build-from-dist] GATE: does dist/soul.c match the sources?"
+if ! ./tools/soulc-stamp.sh --check; then
+  echo "[build-from-dist] REFUSING — the build input is stale. Regenerate and stamp first." >&2
+  exit 9
+fi
+
+[ -f "$RUNTIME/el_runtime.c" ] || { echo "pinned runtime missing at $RUNTIME" >&2; exit 2; }
+
+echo "[build-from-dist] compiling dist/soul.c with CI's flags"
+cc -O2 -DHAVE_CURL -rdynamic \
+  -I"$RUNTIME" \
+  dist/soul.c \
+  "$RUNTIME/el_runtime.c" \
+  -lcurl -lpthread -lm \
+  -o "$OUT" || { echo "[build-from-dist] COMPILE FAILED" >&2; exit 3; }
+
+# Provenance sidecar: what a deployer checks before installing anything.
+SRC_SHA="$(shasum -a 256 dist/soul.c | awk '{print $1}')"
+STAMP_SHA="$(shasum -a 256 dist/soul.c.stamp | awk '{print $1}')"
+COMMIT="$(git rev-parse HEAD 2>/dev/null || echo unknown)"
+DIRTY="clean"; [ -n "$(git status --porcelain -- '*.el' dist/soul.c 2>/dev/null)" ] && DIRTY="DIRTY"
+cat > "$OUT.provenance" <<EOF
+{"built_from":"dist/soul.c",
+ "dist_soul_c_sha256":"$SRC_SHA",
+ "stamp_sha256":"$STAMP_SHA",
+ "git_commit":"$COMMIT",
+ "worktree":"$DIRTY",
+ "runtime":"vendor/el-runtime/v1.0.0-20260501",
+ "flags":"-O2 -DHAVE_CURL -rdynamic"}
+EOF
+
+echo "[build-from-dist] OK -> $OUT ($(wc -c < "$OUT" | tr -d ' ') bytes)"
+echo "[build-from-dist] provenance -> $OUT.provenance (commit ${COMMIT:0:8}, worktree $DIRTY)"

tools/retrieval-eval/README.md

@@ -0,0 +1,147 @@
+# Retrieval eval harness
+
+Measures Neuron's memory retrieval so a change can be shown to help before it is
+believed to help. Nothing else on the memory roadmap should ship without a run
+through this.
+
+```
+tools/retrieval-eval/run_comparison.sh --baseline main --candidate <branch>
+```
+
+That builds a soul from each ref, boots each in isolation on a fixed corpus,
+runs the gold set three times per ref, and prints a table plus a verdict that
+refuses to call a difference real if it is inside the noise band.
+
+## What was reused
+
+This is not a new idea, it is the missing third of an existing one.
+
+| Prior work | What it gave | What was missing |
+|---|---|---|
+| `docs/research/graphrag_eval/` (`collect.py`, `score.py`, 2026-06-08) | The three-retriever comparison that produced the numbers everyone quotes: substring 1.7% P@5, graph 21.7%, BM25 55%. Per-query relevant-id scoring, fixed-denominator precision@5, unique-relevant analysis. | 13 hand-written queries, judged by an LLM after the fact; measured the *live* soul on the *live* engram. |
+| `docs/research-archive/p0-prototypes/eval_pinned_40q_20260715.py` | The pinned-query discipline: ground truth committed as regexes so every run judges alike, plus a `--check` winnability gate. 40 queries in 5 bands including a deliberate paraphrase-hard band. | Scored offline replicas of substring/BM25 — it never ran the real retrieval path. |
+| `docs/research-archive/p0-prototypes/stage0_eval_20260714.py` | The `hit@5` metric and the substring/BM25 reference implementations. | Same: offline only. |
+| `scripts/verify-soul-contract.sh` | The isolation recipe, verbatim: throwaway port, throwaway `HOME`, `SOUL_ENGRAM_PATH`, and the non-obvious `SOUL_ISE_URL` pin that stops an "isolated" soul silently syncing the operator's live brain. | It is a contract gate, not a measurement. |
+| `_engine-liveness-91/gen-soul-amalgam.sh` + `.gitea/workflows/ci.yaml` | The build recipe (`elc --target=c` with every `.elh` on the import chain removed) and CI's exact compile flags. | — |
+
+**Reused directly:** the isolation recipe, the build recipe, fixed-denominator
+precision@5, the pinned-ground-truth and winnability ideas.
+**New here:** ids rather than regexes as ground truth, an associative category
+derived from real graph edges, a superseded/contradicted category scored on
+ranking, a machine-checked zero-lexical-overlap guarantee on paraphrases,
+paired significance testing, and — the point — measurement against the **real
+compiled soul** rather than an offline replica of one leg of it.
+
+## Design fit
+
+The thing under measurement is Will's designed retrieval: spreading activation
+over the weighted directed graph, four-factor multiplicative scoring (parent
+strength x edge weight x target salience x query/target cosine). A Python
+re-implementation would measure my reading of the design. So the harness
+compiles the actual `soul.el` amalgam and asks it over HTTP on
+`/api/neuron/recall`, exactly as the MCP wrapper and the app do.
+
+## Files
+
+| File | Does |
+|---|---|
+| `build_gold_set.py` | Derives and **validates** the gold set from the corpus. `--check` re-validates and exits non-zero if a query became unwinnable or a paraphrase leaked a word. |
+| `gold_set.json` | 38 queries. Every one carries a `derivation` string. |
+| `run_eval.py` | Boots one soul in isolation, runs the gold set, writes metrics. Kills and **confirms dead** its child; records the confirmation in the results file. |
+| `compare.py` | Paired diff of two result files with McNemar's exact test and a stated noise floor. |
+| `build-soul.sh` | Compiles a soul binary from a plain source tree. |
+| `run_comparison.sh` | All of the above, end to end, from two git refs. |
+
+## The gold set — 38 queries
+
+Built from the real corpus (`snapshot-pre-repair-20260806.json`, 78,768 nodes /
+14,214 edges) so it reflects one person's accumulating memory, not document QA.
+
+| Category | n | Expected answer derived by |
+|---|---|---|
+| `exact_rare` | 6 | **Mined.** Tokens with document frequency 1 across all 78,768 nodes, whose single containing node is a 300–6000 char Memory/Knowledge/Belief. That node is the only possible answer. Re-verified every build. |
+| `phrase` | 7 | **Mined.** Case-insensitive verbatim scan; the matching set *is* the answer key. Phrases matching >25 nodes are rejected as too diffuse. |
+| `paraphrase` | 13 | **Hand-selected, machine-checked.** Target locked by id; the build then proves that **zero** content words of the query appear anywhere in the target's label, content, or tags. A leak fails the build — the category cannot quietly decay into lexical matching. |
+| `associative` | 6 | **Derived from edges.** Query built from one value node's distinctive vocabulary; expected answers are its siblings on the `Self - Values (grounded)` hub. Siblings sharing any query word are dropped, so the only route from query to answer is seed -> hub -> sibling. |
+| `nonsense` | 3 | **Control.** Verified that no token occurs anywhere in the corpus. Correct behaviour is to return nothing. |
+| `superseded` | 3 | **Derived.** Correction/stale pairs located by regex scan, kept only when both sides resolve to different surviving nodes. Scored on **ranking**: the correction must be returned *and* rank above the stale node. |
+
+## Metrics
+
+`hit@5`, `recall@5`, `recall@10`, `precision@5` (fixed denominator 5, so an
+empty result is punished like a page of junk), `MRR@10`, and wall-clock latency
+per query (p50/p95/max). Output is a table plus a machine-readable JSON per run
+so runs can be diffed.
+
+## Honesty about noise
+
+- **Minimum detectable swing on this 38-query set: 6 queries.** If every query
+  that changes changes the same way, `p = 2 x 0.5^n`, which first drops under
+  0.05 at n=6. Any net change smaller than that is inside the noise band and
+  `compare.py` says so in those words.
+- **Run-to-run drift is measured, not assumed.** Activation is a stateful read
+  by design (traversal reinforces what it touches), so identical inputs need not
+  give identical outputs. Observed: `main` 0 queries of drift across 3 runs
+  (fully deterministic); the activation branch 1 query.
+- The noise floor used for the verdict is `max(6, observed_drift + 1)`.
+- **This gold set is underpowered for small effects.** A genuine 3-query
+  improvement would not clear the bar. Growing the set is the fix; until then, a
+  small positive delta means "not shown", not "no effect".
+
+## First result: `main` vs `feat/recall-through-activation`
+
+Corpus and gold set identical, three runs each, fresh corpus copy per run.
+
+| | main | recall-through-activation | delta |
+|---|---|---|---|
+| hit@5 | 34.3% | 22.9% | **-11.4pp** |
+| recall@5 | 26.9% | 19.1% | -7.9pp |
+| recall@10 | 33.3% | 24.3% | -9.1pp |
+| precision@5 | 12.0% | 7.4% | -4.6pp |
+| MRR@10 | 0.294 | 0.242 | -0.053 |
+| latency p50 | 1140 ms | 3209 ms | **2.81x** |
+| latency p95 | 1584 ms | 4852 ms | 3.06x |
+| nonsense clean | 2/3 | 2/3 | — |
+| superseded outranks | 1/3 | 0/3 | -1 |
+
+By category (hit@5):
+
+| category | main | activation |
+|---|---|---|
+| exact_rare | 100% | 100% |
+| phrase | 85.7% | **28.6%** |
+| paraphrase | 0% | 0% |
+| associative | 0% | 0% |
+| superseded | 0% | 0% |
+
+**Verdict: directionally worse, one query short of significant.** 5 discordant
+pairs, all 5 against the candidate, 0 for it. McNemar exact p = 0.0625 — under
+the stated rule that is *inside* the noise band, so the harness reports "no
+measurable difference" on accuracy and the honest summary is "5 for 5 the wrong
+way, needs a 6th or a larger gold set to call".
+
+Latency is a different story: 2.8x at p50 is deterministic and far outside any
+noise band. That regression is real.
+
+The result the branch was written for did not appear. Its stated purpose was to
+recover sibling nodes one hub-hop away — the `associative` category — and that
+category is **0/6 on both builds**. Probing directly: for the query
+`Marines hernia sepsis medical ward`, the activation build returns the lexical
+seed node itself at rank 8, and none of its 12 hub siblings anywhere in the top
+10. The traversal is running; it is not reaching siblings.
+
+Two corpus facts likely explain it, and both are measurable rather than
+speculative:
+
+1. **The graph is nearly edgeless.** Only 4,060 of 78,768 nodes (5.2%) carry any
+   edge at all — 14,214 edges total, 0.18 per node. Spreading activation over a
+   graph with no edges is an expensive way to do lexical matching, which is
+   roughly what the numbers show.
+2. **No embeddings.** No node in this snapshot has an embedding field, so the
+   fourth factor of the four-factor product — query/target cosine similarity —
+   has nothing to compute from, and the semantic seeding pass is inert.
+
+That is the harness earning its keep on its first job: the change would have
+felt like progress (it is the designed mechanism, and it does run) and measures
+as a regression on phrase queries plus a 2.8x latency cost, with its intended
+benefit unrealised because the corpus lacks the structure it needs.

tools/retrieval-eval/bestval.py

@@ -0,0 +1,21 @@
+import numpy as np, json, urllib.request
+SP="/private/tmp/claude-501/-Users-timlingo/82369039-a20e-4b5a-8a5e-28234a57b996/scratchpad"
+np.seterr(all='ignore')
+M=np.load(SP+'/emb.npy'); eids=open(SP+'/ids.txt',encoding='utf-8',errors='surrogateescape').read().split('\n')
+eidx={k:i for i,k in enumerate(eids)}
+gold=json.load(open("/Users/timlingo/Development/neuron-technologies/_wt-assoc-leg/tools/retrieval-eval/gold_set.json"))['queries']
+VALS=sorted({r for q in gold if q['category']=='paraphrase' for r in q['relevant']})
+VI=[eidx[v] for v in VALS]
+def emb(t):
+    b=json.dumps({"model":"nomic-embed-text","prompt":t}).encode()
+    r=urllib.request.Request("http://127.0.0.1:11434/api/embeddings",data=b,headers={"Content-Type":"application/json"})
+    v=np.array(json.load(urllib.request.urlopen(r,timeout=60))["embedding"],dtype=np.float32)
+    return v/(np.linalg.norm(v)+1e-9)
+print("qid  cat         bestValueNodeGlobalRank   goldGlobalRank  goldSiblingRank")
+for q in gold:
+    if q['category']!='paraphrase': continue
+    v=emb(q['query']); s=M@v; s[~np.isfinite(s)]=-1
+    ranks=sorted(int((s>s[j]).sum())+1 for j in VI)
+    g=eidx[q['relevant'][0]]; gr=int((s>s[g]).sum())+1
+    sv=np.array([s[j] for j in VI]); sib=int((sv>s[g]).sum())+1
+    print("%-4s %-11s best=%-5d (top3 val ranks %s)  gold=%-5d sib=%d" % (q['id'],q['category'],ranks[0],ranks[:3],gr,sib))

tools/retrieval-eval/build-soul.sh

@@ -0,0 +1,44 @@
+#!/usr/bin/env bash
+# build-soul.sh — compile a soul binary from a plain source tree (no git needed).
+#
+# Reuses the amalgam recipe worked out in gen-soul-amalgam.sh (round 9.1) and the
+# compile flags from .gitea/workflows/ci.yaml, so the binary under test is the
+# same translation unit CI ships — not a re-implementation.
+#
+#   elc --target=c emits only an extern prototype for any module that has a .elh
+#   header beside it, and inlines the module's bodies when it does not. So the
+#   amalgam is produced in a scratch copy with every .elh on the import chain
+#   deleted.
+#
+# usage: build-soul.sh <src-tree-with-*.el> <out-binary>
+set -euo pipefail
+SRC="${1:?usage: build-soul.sh <src-tree> <out-binary>}"
+OUT="${2:?out-binary}"
+ELC="${ELC:-$HOME/neuron-dev-stack/src/el/lang/dist/platform/elc}"
+EL_REPO="${EL_REPO:-$HOME/Development/neuron-technologies/el}"
+RTDIR="${RTDIR:-$SRC/vendor/el-runtime/v1.0.0-20260501}"
+SSL="${SSL_PREFIX:-/opt/homebrew/opt/openssl@3}"
+
+[ -x "$ELC" ] || { echo "no elc at $ELC" >&2; exit 2; }
+[ -f "$RTDIR/el_runtime.c" ] || { echo "no el_runtime.c at $RTDIR" >&2; exit 2; }
+
+GEN="$(mktemp -d "${TMPDIR:-/tmp}/soul-build.XXXXXX")"
+trap 'rm -rf "$GEN"' EXIT
+mkdir -p "$GEN/neuron" "$GEN/foundation/el/elp/src"
+cp "$SRC"/*.el "$GEN/neuron/"
+cp "$EL_REPO"/elp/src/*.el "$GEN/foundation/el/elp/src/"
+find "$GEN" -name '*.elh' -delete
+
+( cd "$GEN/neuron" && "$ELC" --target=c soul.el ) > "$GEN/soul.c"
+BODIES=$(grep -c '^el_val_t .*) {$' "$GEN/soul.c" || true)
+echo "[build-soul] amalgam $(wc -c < "$GEN/soul.c" | tr -d ' ') bytes, ${BODIES} inlined bodies"
+[ "$BODIES" -ge 1200 ] || { echo "[build-soul] FAIL: only $BODIES bodies — an import was not inlined"; exit 1; }
+
+cc -O2 -DHAVE_CURL -rdynamic \
+   -I"$RTDIR" -I"$SSL/include" -L"$SSL/lib" \
+   "$GEN/soul.c" "$RTDIR/el_runtime.c" \
+   -lssl -lcrypto -lcurl -lpthread -lm \
+   -o "$OUT" 2> "$GEN/cc.log" || { echo "[build-soul] FAIL compile"; tail -40 "$GEN/cc.log"; exit 1; }
+if grep -qE 'implicit.*(engram_|el_)' "$GEN/cc.log"; then
+  echo "[build-soul] FAIL: implicit declarations of runtime symbols"; grep -E 'implicit' "$GEN/cc.log" | head; exit 1; fi
+echo "[build-soul] OK -> $OUT ($(wc -c < "$OUT" | tr -d ' ') bytes)"

tools/retrieval-eval/build_gold_set.py

@@ -0,0 +1,506 @@
+#!/usr/bin/env python3
+"""
+build_gold_set.py — derive the retrieval gold set FROM the corpus, and validate it.
+
+WHY THIS FILE EXISTS AS CODE AND NOT AS A HAND-WRITTEN JSON
+    A gold set nobody can audit is vibes with extra steps. Every expected answer
+    here is either (a) mined from the corpus by a rule this script re-runs, or
+    (b) hand-selected with a stated criterion that this script then CHECKS
+    against the corpus. Both leave a `derivation` string on every query, and the
+    checks are re-run on demand so the set cannot silently rot as the corpus
+    changes.
+
+    Lineage: this extends the pinned-query approach from
+    docs/research-archive/p0-prototypes/eval_pinned_40q_20260715.py (pinned
+    ground-truth patterns + a --check "winnability" gate) and the per-query
+    relevant-id scoring from docs/research/graphrag_eval/score.py. What is new:
+    ids as ground truth rather than regexes alone, an ASSOCIATIVE category
+    derived from real graph edges, a superseded/contradicted category, and a
+    machine-checked no-lexical-overlap guarantee on the paraphrase category.
+
+THE SIX CATEGORIES, AND WHAT EACH ONE IS FOR
+    exact_rare   a single rare word. Substring matching already wins these.
+                 They are a REGRESSION GUARD: any change that loses them is
+                 disqualified regardless of what else it gains.
+    phrase       a multi-word string that exists verbatim in the corpus.
+                 Guards multi-token queries, which the old substring matcher
+                 handled by returning nothing.
+    paraphrase   same meaning, ZERO shared content words with the target node.
+                 THE CATEGORY THAT MATTERS. Mechanically unreachable by string
+                 matching; reachable only by semantics or by association.
+    associative  the answer is one hub-hop from an obvious starting point and
+                 shares no words with the query. This is the case the graph is
+                 supposed to buy: query one value, get its siblings.
+    nonsense     must return nothing. Guards against a retriever that "improves"
+                 recall by returning the whole graph.
+    superseded   a fact that was later corrected. The correction must OUTRANK
+                 the stale version — ranking, not mere presence.
+
+usage:
+    python3 build_gold_set.py <snapshot.json> [--out gold_set.json] [--check]
+    --check re-validates an existing gold_set.json against the corpus and exits
+    non-zero if any query became unwinnable or any paraphrase leaked a word.
+"""
+import argparse
+import json
+import os
+import re
+import sys
+from collections import Counter, defaultdict
+
+HERE = os.path.dirname(os.path.abspath(__file__))
+DEFAULT_OUT = os.path.join(HERE, "gold_set.json")
+
+TOKEN = re.compile(r"[a-z0-9][a-z0-9\-']*")
+
+# Stopwords are deliberately generous. A paraphrase query is only interesting if
+# its CONTENT words are absent from the target; "the", "is", "what" appearing in
+# both proves nothing. Being generous here makes the overlap test STRICTER on
+# the words that carry meaning, which is the conservative direction.
+STOP = set("""
+a about above after again against all also am an and any are aren't as at be because been
+before being below between both but by can can't cannot could couldn't did didn't do does
+doesn't doing don't down during each few for from further had hadn't has hasn't have haven't
+having he her here hers herself him himself his how i if in into is isn't it its itself just
+me more most my myself no nor not of off on once only or other others ought our ours ourselves
+out over own same shan't she should shouldn't so some such than that the their theirs them
+themselves then there these they this those through to too under until up very was wasn't we
+were weren't what when where which while who whom why will with won't would wouldn't you your
+yours yourself yourselves get gets got make makes made take takes use uses used way ways thing
+things does doing done keep keeps kept go goes going come comes came one two something anything
+""".split())
+
+
+# ─────────────────────────────────────────────────────────────────────────────
+# corpus helpers
+# ─────────────────────────────────────────────────────────────────────────────
+def load_corpus(path):
+    with open(path, encoding="utf-8", errors="replace") as fh:
+        data = json.load(fh)
+    nodes = [n for n in data.get("nodes", []) if isinstance(n, dict) and n.get("id")]
+    edges = [e for e in data.get("edges", []) if isinstance(e, dict)]
+    return nodes, edges
+
+
+def doctext(n):
+    return " ".join([str(n.get("label") or ""), str(n.get("content") or ""), str(n.get("tags") or "")])
+
+
+def content_tokens(s):
+    return {t for t in TOKEN.findall(s.lower()) if t not in STOP and len(t) > 2}
+
+
+# ─────────────────────────────────────────────────────────────────────────────
+# hand-authored queries. Every entry states HOW its expected answer was chosen.
+# The `check` field names the validation this script runs against the corpus.
+# ─────────────────────────────────────────────────────────────────────────────
+
+# EXACT_RARE — mined, not chosen. The rule (re-run by mine_exact_rare below):
+# tokens whose document frequency across the whole corpus is 1, whose single
+# containing node is a Memory/Knowledge/Belief with 300-6000 chars of content
+# (so the answer is a real memory, not a 117KB whitepaper that contains every
+# word in English), and whose token is plain lowercase alphabetic. The expected
+# answer is that one node — it is the only node that can possibly be correct.
+EXACT_RARE_SEEDS = [
+    "unjailbreakable",
+    "engram-migrate",
+    "cartabandonedevent",
+    "pre-apprenticeship",
+    "inferencenodemanager",
+    "clear-eyed",
+]
+
+# PHRASE — chosen by reading the corpus for phrases that (a) occur verbatim,
+# (b) occur in a small enough set of nodes that "relevant" is well defined.
+# Expected answers are computed here as EVERY node whose text contains the
+# phrase case-insensitively — so the answer set is a fact about the corpus, not
+# an opinion. Queries whose phrase matches more than PHRASE_MAX nodes are
+# rejected by validation as too diffuse to score.
+PHRASE_MAX = 25
+PHRASE_SEEDS = [
+    ("patterns not returns",
+     "a verbatim correction Will issued; expected = every node containing the phrase"),
+    ("thirty moves",
+     "the canonical biographical phrase; expected = every node containing it"),
+    ("Grandma Lucas",
+     "a named person appearing verbatim in the biography/value nodes"),
+    ("Directed Harmonic",
+     "the canonical DHARMA expansion, confirmed by Will April 24 2026"),
+    ("Sarah Bishop",
+     "a named person; rare enough that the answer set is unambiguous"),
+    ("Directed Autonomous Runtime Modification",
+     "the DARMA expansion, quoted verbatim in the backlog item and its correction"),
+    ("zero-knowledge encrypted backup",
+     "the paid-tier feature name as written in the roadmap nodes"),
+]
+
+# PARAPHRASE — hand-authored. THE SELECTION CRITERION, stated once and applied
+# to all nine: pick a node whose SUBJECT is unmistakable to a reader, then write
+# the query a person would actually type when they remember the subject but not
+# the words. The target is then LOCKED by id, and this script enforces the hard
+# property that makes the category meaningful: not one content word of the query
+# appears anywhere in the target node's label, content, or tags. If a word
+# leaks, validation fails and the query must be rewritten — the set cannot
+# quietly degrade into a lexical query wearing a paraphrase costume.
+PARAPHRASE_SEEDS = [
+    ("kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+     "the elderly relative who passed while he stayed away",
+     "target: 'Value - Do the Essential Thing While You Can', whose subject is Grandma Lucas "
+     "dying in Feb 2006 without Will saying goodbye. Query names the event with none of the "
+     "node's own vocabulary."),
+    ("kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+     "a soldier sidelined by illness who refused to quit",
+     "target: 'Value - Survival Is Not an Excuse to Stop', whose subject is enlisting in the "
+     "Marines, a severe hernia, and sepsis. Query describes the episode obliquely."),
+    ("kn-13f60407-7b70-4db1-964f-ea1f8196efbd",
+     "choosing an uncomfortable fact over a pleasant fiction",
+     "target: 'Value - Honesty Before Comfort'. Query states the principle in wholly "
+     "different words."),
+    ("kn-22d77abe-b3c5-42fd-afcd-dcb87d924929",
+     "a tight payload beats a bloated one",
+     "target: 'Value - Precision Over Brute Force'. Query restates the claim with no "
+     "shared vocabulary."),
+    ("kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+     "if you are able and nobody is coming the job is yours",
+     "target: 'Value - Capability Is a Debt You Owe the Moment'. Query states the "
+     "obligation without the node's terms."),
+    ("kn-0bb4f021-56de-4947-a35b-a37209e7ba21",
+     "learning is the wealth creditors cannot seize",
+     "target: 'Value - Knowledge Survives When Nothing Else Does', whose subject is the "
+     "library following Will across 30+ moves."),
+    ("kn-5de5a9ac-fd15-45ab-bf18-77566781cf40",
+     "reliability proven by track record not assertion",
+     "target: 'Value - Earned Trust' ('Trust is demonstrated, not declared')."),
+    ("kn-a5b3d0ac-f6a1-49a4-aebb-b8b4cd67fe83",
+     "boundaries that enable instead of confine",
+     "target: 'Value - Constraints as Freedom'. Query is a restatement of the same claim."),
+    ("kn-78db5396-3dbc-4481-bfc7-e4e1422feb1c",
+     "what shifts tells you where to cut a system apart",
+     "target: 'Value - Change Is the Signal', the value VBD is built on."),
+    ("kn-f230b362-b201-4402-9833-4160c89ab3d4",
+     "a mind that compounds instead of resetting each day",
+     "target: 'Value - The System Must Accumulate'. Query is the accumulation claim in "
+     "different vocabulary."),
+    ("kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+     "loved for the unedited self and not the polished exterior",
+     "target: 'Value - Being Seen Is Rarer Than Being Known', whose subject is Sarah Bishop "
+     "as the first person Will did not perform for."),
+    ("kn-e0423482-cfa5-4796-8689-8495c93b66bc",
+     "cheerfulness you arrive at instead of assuming",
+     "target: 'Value - Hope Is a Conclusion'. Query restates 'a conclusion, not a premise'."),
+    ("kn-6061318f-046b-4935-907d-8eafdce14930",
+     "a childhood offering no solid foundation to inherit",
+     "target: 'Value - Structure Is Not Inherited', whose subject is thirty moves between "
+     "two parents' collapses."),
+]
+
+# ASSOCIATIVE — derived from real edges, not authored. The construction:
+# every value node hangs off the 'Self - Values (grounded)' hub by an `identity`
+# edge. For a chosen value node V, the query is built from V's own distinctive
+# vocabulary; the expected answers are V's SIBLINGS on that hub. A sibling
+# shares no query words with the query by construction (validated below), so the
+# only path from the query to a sibling is: lexical seed on V -> hub -> sibling.
+# That is a two-hop traversal and nothing else can produce it.
+VALUES_HUB = "kn-5b606390-a52d-4ca2-8e0e-eba141d13440"
+ASSOCIATIVE_SEEDS = [
+    ("kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71", "Grandma Lucas stroke February 2006 goodbye window"),
+    ("kn-58874a74-b96f-4883-9e08-45707f4bd3ee", "Marines hernia sepsis medical ward"),
+    ("kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e", "Sarah Bishop Dyer trailer performance"),
+    ("kn-a5b3d0ac-f6a1-49a4-aebb-b8b4cd67fe83", "Swarm Architecture containment lateral worker"),
+    ("kn-e0423482-cfa5-4796-8689-8495c93b66bc", "hope won inside the narrative preface"),
+    ("kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8", "man of the house six years old expectation"),
+]
+
+# NONSENSE — must return nothing. Strings chosen to be lexically impossible:
+# validation asserts each appears in ZERO corpus nodes as a substring and that
+# none of its tokens appears anywhere either (so not even a partial seed exists).
+NONSENSE_SEEDS = [
+    "zqxjvw plimforth grebulon",
+    "flarnbistle quommetry",
+    "xxqzzt vurblenacht throom",
+]
+
+# SUPERSEDED — a fact that was corrected. Chosen by searching the corpus for
+# explicit correction language and keeping pairs where BOTH the stale statement
+# and its correction exist as separate nodes. Scored on RANKING: the correction
+# must appear, and must appear above the stale node. Ids are locked here and
+# validated to exist and to match their stated role.
+SUPERSEDED_SEEDS = [
+    # (query, correct_id, stale_id, derivation)
+]
+
+
+# ─────────────────────────────────────────────────────────────────────────────
+# mining
+# ─────────────────────────────────────────────────────────────────────────────
+def mine_exact_rare(nodes, byid, seeds):
+    """Re-derive: confirm each seed token still has df==1 and name its node."""
+    tok = re.compile(r"[A-Za-z][A-Za-z0-9\-]{4,}")
+    want = set(seeds)
+    df = Counter()
+    post = defaultdict(set)
+    for n in nodes:
+        for t in {w.lower() for w in tok.findall(doctext(n))}:
+            if t in want:
+                df[t] += 1
+                post[t].add(n["id"])
+    out = []
+    for s in seeds:
+        ids = sorted(post.get(s, ()))
+        out.append((s, ids, df.get(s, 0)))
+    return out
+
+
+def phrase_matches(nodes, phrase):
+    p = phrase.lower()
+    return sorted(n["id"] for n in nodes if p in doctext(n).lower())
+
+
+def hub_siblings(edges, hub, relation="identity"):
+    sibs = []
+    for e in edges:
+        if e.get("from_id") == hub and e.get("relation") == relation:
+            sibs.append(e["to_id"])
+        elif e.get("to_id") == hub and e.get("relation") == relation:
+            sibs.append(e["from_id"])
+    return list(dict.fromkeys(sibs))
+
+
+def find_superseded_pairs(nodes, byid):
+    """Locked pairs, each verified here to exist and to carry its stated marker.
+
+    Chosen by scanning the corpus for explicit correction language
+    (CORRECTION/SUPERSEDES/re-corrected/no longer/RECONCILED) and keeping only
+    cases where the STALE claim also survives as its own node — a supersession
+    with nothing to outrank is not a ranking test.
+    """
+    pairs = []
+    txt = {n["id"]: doctext(n) for n in nodes}
+
+    def find_one(pattern, exclude=()):
+        rx = re.compile(pattern)
+        return [n["id"] for n in nodes
+                if n["id"] not in exclude
+                and rx.search(txt[n["id"]])
+                and 150 < len(str(n.get("content") or "")) < 12000
+                and n.get("node_type") in ("Memory", "Knowledge", "Belief", "BacklogItem")]
+
+    # Each entry: (query, correction-pattern, stale-pattern, why).
+    # The stale side is searched with the correction hits EXCLUDED, because most
+    # correction memories quote the claim they are killing — without the
+    # exclusion the "stale" node resolves to the correction itself and the pair
+    # collapses into a no-op. A pair is only emitted if both sides resolve to
+    # DIFFERENT surviving nodes; otherwise it is dropped and reported.
+    SPECS = [
+        ("is the self-improvement architecture called DARMA or DHARMA",
+         r'(?i)CORRECTION:.{0,90}DHARMA .{0,12}not DARMA',
+         r'(?i)\bDARMA\b',
+         "correction node is Will's confirmation that the H is intentional (DHARMA, not DARMA); "
+         "the stale node is the surviving backlog item still titled 'Implement DARMA'."),
+
+        ("how many provisional patents does Will actually have",
+         r'(?i)EXACTLY 6 (fully-specced )?provisional',
+         r'(?i)(MY ARCHITECTURE = 12 filed patents|\b12 filed patents\b)',
+         "correction node is the 2026-06-17 confabulation flag establishing EXACTLY 6 provisionals; "
+         "the stale node is the surviving memory that asserts 12 filed patents."),
+
+        ("is MCP still the live integration layer",
+         r'(?i)MCP RETIRED',
+         r'(?i)MCP server live at',
+         "correction node is the 'CGI ARCHITECTURE - THREE LAYERS, MCP RETIRED' decision of "
+         "April 30 2026; the stale node still records the MCP server as live."),
+
+        ("what does the patterns-not-returns directive mean",
+         r'(?i)CORRECTION:.{0,80}patterns not returns',
+         r'(?i)established returns',
+         "correction node is Will's 'patterns not returns' correction; the stale node is a "
+         "surviving node carrying the misread 'established returns' directive."),
+
+        ("was the earlier identity-bug finding correct",
+         r'(?i)SUPERSEDES the earlier .critical identity bug',
+         r'(?i)critical identity bug',
+         "correction node explicitly supersedes the 'critical identity bug' finding; the stale "
+         "node is the surviving original finding."),
+
+        ("does Neuron have recursive self-improvement",
+         r'(?i)twice answered .Neuron has no recursive self-improvement',
+         r'(?i)no recursive self-improvement',
+         "correction node records the June-29 finding that the CGI provisional IS the "
+         "recursive-self-improvement mechanism; the stale node is the surviving denial."),
+    ]
+
+    for query, cpat, spat, why in SPECS:
+        corr = find_one(cpat)
+        if not corr:
+            continue
+        stale = find_one(spat, exclude=set(corr))
+        if not stale:
+            continue
+        pairs.append((query, corr[0], stale[0], why))
+
+    return pairs
+
+
+# ─────────────────────────────────────────────────────────────────────────────
+# build
+# ─────────────────────────────────────────────────────────────────────────────
+def build(nodes, edges):
+    byid = {n["id"]: n for n in nodes}
+    tokset = {n["id"]: content_tokens(doctext(n)) for n in nodes}
+    queries = []
+    problems = []
+    qn = [0]
+
+    def add(cat, query, relevant, derivation, **extra):
+        qn[0] += 1
+        q = {
+            "id": f"q{qn[0]:02d}",
+            "category": cat,
+            "query": query,
+            "relevant": sorted(relevant),
+            "derivation": derivation,
+        }
+        q.update(extra)
+        queries.append(q)
+        return q
+
+    # --- exact_rare ---------------------------------------------------------
+    for tokname, ids, df in mine_exact_rare(nodes, byid, EXACT_RARE_SEEDS):
+        if df != 1 or len(ids) != 1:
+            problems.append(f"exact_rare '{tokname}': df={df}, ids={len(ids)} (expected df=1)")
+            continue
+        lab = (byid[ids[0]].get("label") or "")[:60]
+        add("exact_rare", tokname, ids,
+            f"MINED: token '{tokname}' has document frequency 1 over all {len(nodes)} corpus nodes "
+            f"(re-verified at build time). Its single containing node is {ids[0]} "
+            f"('{lab}'), which is therefore the only possible correct answer.")
+
+    # --- phrase -------------------------------------------------------------
+    for phrase, why in PHRASE_SEEDS:
+        ids = phrase_matches(nodes, phrase)
+        if not ids:
+            problems.append(f"phrase '{phrase}': 0 corpus matches — unwinnable")
+            continue
+        if len(ids) > PHRASE_MAX:
+            problems.append(f"phrase '{phrase}': {len(ids)} matches > {PHRASE_MAX} — too diffuse")
+            continue
+        add("phrase", phrase, ids,
+            f"MINED: {why}. Case-insensitive verbatim substring scan over label+content+tags at "
+            f"build time returns exactly {len(ids)} node(s); that set IS the answer key.")
+
+    # --- paraphrase ---------------------------------------------------------
+    for target, query, why in PARAPHRASE_SEEDS:
+        if target not in byid:
+            problems.append(f"paraphrase target {target} not in corpus")
+            continue
+        qt = content_tokens(query)
+        leak = sorted(qt & tokset[target])
+        if leak:
+            problems.append(f"paraphrase '{query}': leaks {leak} into target {target}")
+            continue
+        add("paraphrase", query, [target],
+            f"HAND-SELECTED with criterion: {why} VERIFIED at build time: of the {len(qt)} content "
+            f"words in the query, ZERO appear anywhere in the target's label, content, or tags — so "
+            f"no string-matching retriever can reach this answer.",
+            zero_overlap_verified=True, query_content_words=sorted(qt))
+
+    # --- associative --------------------------------------------------------
+    sibs = hub_siblings(edges, VALUES_HUB)
+    if len(sibs) < 5:
+        problems.append(f"associative: values hub {VALUES_HUB} has only {len(sibs)} siblings")
+    for src, query in ASSOCIATIVE_SEEDS:
+        if src not in byid or src not in sibs:
+            problems.append(f"associative source {src} not a sibling on {VALUES_HUB}")
+            continue
+        qt = content_tokens(query)
+        others = [s for s in sibs if s != src and s in byid]
+        # A sibling only counts as a legitimate expected answer if the query
+        # cannot reach it lexically. Drop any sibling that shares a content word.
+        clean = [s for s in others if not (qt & tokset[s])]
+        dropped = len(others) - len(clean)
+        if len(clean) < 5:
+            problems.append(f"associative '{query}': only {len(clean)} lexically-unreachable siblings")
+            continue
+        add("associative", query, clean,
+            f"DERIVED FROM EDGES: the query is built from the distinctive vocabulary of {src} "
+            f"('{(byid[src].get('label') or '')[:48]}'), which hangs off the values hub {VALUES_HUB} "
+            f"by an `identity` edge. Expected answers are that node's SIBLINGS on the same hub "
+            f"({len(clean)} of {len(others)}; {dropped} dropped because they shared a query word and "
+            f"so were lexically reachable). Every remaining sibling shares ZERO content words with "
+            f"the query — the only route from query to answer is seed({src}) -> hub -> sibling, a "
+            f"two-hop traversal.",
+            associative_source=src, hub=VALUES_HUB, siblings_dropped_for_overlap=dropped)
+
+    # --- nonsense -----------------------------------------------------------
+    all_tokens = set()
+    for n in nodes:
+        all_tokens |= {t for t in TOKEN.findall(doctext(n).lower())}
+    for s in NONSENSE_SEEDS:
+        present = sorted(t for t in TOKEN.findall(s.lower()) if t in all_tokens)
+        if present:
+            problems.append(f"nonsense '{s}': tokens {present} DO occur in corpus")
+            continue
+        add("nonsense", s, [],
+            f"CONTROL: verified at build time that none of this string's tokens occurs anywhere in "
+            f"the corpus. Correct behaviour is to return NOTHING; any result is a false positive.",
+            expect_empty=True)
+
+    # --- superseded ---------------------------------------------------------
+    for query, correct, stale, why in find_superseded_pairs(nodes, byid):
+        if correct not in byid or stale not in byid:
+            problems.append(f"superseded '{query}': id missing from corpus")
+            continue
+        add("superseded", query, [correct],
+            f"DERIVED: {why} Scored on RANKING, not presence: the corrected node {correct} must be "
+            f"returned AND must rank above the stale node {stale}.",
+            must_outrank=[correct, stale],
+            stale_id=stale,
+            correct_label=(byid[correct].get("label") or "")[:70],
+            stale_label=(byid[stale].get("label") or "")[:70])
+
+    return queries, problems
+
+
+def summarize(queries):
+    c = Counter(q["category"] for q in queries)
+    return ", ".join(f"{k}={c[k]}" for k in
+                     ("exact_rare", "phrase", "paraphrase", "associative", "nonsense", "superseded")
+                     if c[k])
+
+
+def main():
+    ap = argparse.ArgumentParser()
+    ap.add_argument("snapshot")
+    ap.add_argument("--out", default=DEFAULT_OUT)
+    ap.add_argument("--check", action="store_true",
+                    help="validate only; do not write. Non-zero exit if anything is unwinnable.")
+    args = ap.parse_args()
+
+    nodes, edges = load_corpus(args.snapshot)
+    print(f"corpus: {len(nodes)} nodes, {len(edges)} edges  ({os.path.basename(args.snapshot)})")
+    queries, problems = build(nodes, edges)
+
+    print(f"gold set: {len(queries)} queries  [{summarize(queries)}]")
+    if problems:
+        print(f"\n{len(problems)} PROBLEM(S) — these queries were REJECTED, not silently kept:")
+        for p in problems:
+            print("   -", p)
+
+    if args.check:
+        sys.exit(1 if problems else 0)
+
+    doc = {
+        "corpus": os.path.abspath(args.snapshot),
+        "corpus_nodes": len(nodes),
+        "corpus_edges": len(edges),
+        "note": ("Every query carries a `derivation` recording how its expected answer was chosen. "
+                 "Re-run with --check to re-validate the whole set against the corpus."),
+        "queries": queries,
+    }
+    with open(args.out, "w", encoding="utf-8") as fh:
+        json.dump(doc, fh, indent=1, ensure_ascii=False)
+    print(f"\nwrote {args.out}")
+
+
+if __name__ == "__main__":
+    main()

tools/retrieval-eval/ceiling.py

@@ -0,0 +1,43 @@
+import json,sys,pickle,numpy as np,itertools
+sys.path.insert(0,'.')
+from policy2 import legs3,outcome,G,NODES,merge
+# cache per-query leg id-lists, floored and unfloored
+cache={}
+for q in G['queries']:
+    Lf,Sf,Af=legs3(q['query'])
+    Lu,Su,Au=legs3(q['query'],unfloor=True)
+    cache[q['id']]=dict(L=Lf,Sf=Sf,A=Af,Su=Su,Au=Au)
+pickle.dump(cache,open('ceil.pkl','wb'))
+def mrg(pattern,L,S,A,lim=10):
+    out=[];p={'L':0,'S':0,'A':0};src={'L':L,'S':S,'A':A}
+    i=0
+    while len(out)<lim:
+        prog=False
+        for ch in pattern:
+            lst=src[ch]
+            if p[ch]<len(lst):
+                x=lst[p[ch]];p[ch]+=1;prog=True
+                if x not in out: out.append(x)
+                if len(out)>=lim: return out
+        if not prog: break
+    return out
+def ev(pattern,unfl):
+    res={}
+    for q in G['queries']:
+        c=cache[q['id']]
+        S=c['Su'] if unfl else c['Sf']
+        ids=[NODES[i]['id'] for i in mrg(pattern,c['L'],S,c['A'],10)]
+        res[q['id']]=outcome(q,ids)
+    return res
+base=ev('LSA',False)
+print("baseline",sum(base.values()))
+best=[]
+pats=['LSA','LAS','SLA','ALS','SAL','ASL','LSSA','LSASA','LSAA','LSSAA','LSAS','SSLA','LLSA','SALSA','LSAAS']
+for unfl in (False,True):
+    for p in pats:
+        r=ev(p,unfl)
+        g=sorted(k for k in base if r[k] and not base[k]);l=sorted(k for k in base if base[k] and not r[k])
+        best.append((len(g)-len(l),p,unfl,g,l))
+best.sort(reverse=True)
+for n,p,u,g,l in best[:10]:
+    print("net=%+d  pat=%-6s unfloor=%s gains=%s losses=%s"%(n,p,u,g,l))

tools/retrieval-eval/cmp-nogate.json

@@ -0,0 +1,146 @@
+{
+ "baseline": "bm25lex",
+ "candidate": "wsclaim24",
+ "n_shared_queries": 38,
+ "fixed_by_candidate": [
+  "q14",
+  "q25"
+ ],
+ "broken_by_candidate": [
+  "q15",
+  "q28",
+  "q33",
+  "q34"
+ ],
+ "discordant": 6,
+ "net_queries": -2,
+ "mcnemar_exact_p": 0.6875,
+ "min_detectable_swing_queries": 6,
+ "observed_run_to_run_drift_queries": 0,
+ "noise_floor_queries": 6,
+ "verdict": "no measurable difference",
+ "baseline_aggregate": {
+  "n_queries": 38,
+  "n_scored": 35,
+  "hit@5": 0.7428571428571429,
+  "recall@5": 0.5536485340056769,
+  "recall@10": 0.6175677497106068,
+  "precision@5": 0.20000000000000007,
+  "mrr@10": 0.5021428571428571,
+  "nonsense_clean": "2/3",
+  "superseded_outranks": "2/3",
+  "latency_ms_p50": 1184.4,
+  "latency_ms_p95": 1620.0,
+  "latency_ms_max": 1655.4,
+  "errors": 0,
+  "by_category": {
+   "associative": {
+    "n": 6,
+    "hit@5": 0.6666666666666666,
+    "recall@5": 0.08857808857808858,
+    "recall@10": 0.23310023310023312,
+    "mrr@10": 0.25
+   },
+   "exact_rare": {
+    "n": 6,
+    "hit@5": 1.0,
+    "recall@5": 1.0,
+    "recall@10": 1.0,
+    "mrr@10": 1.0
+   },
+   "nonsense": {
+    "n": 3,
+    "clean": 2,
+    "avg_false_positives": 3.3333333333333335
+   },
+   "paraphrase": {
+    "n": 13,
+    "hit@5": 0.6153846153846154,
+    "recall@5": 0.6153846153846154,
+    "recall@10": 0.6153846153846154,
+    "mrr@10": 0.2846153846153846
+   },
+   "phrase": {
+    "n": 7,
+    "hit@5": 1.0,
+    "recall@5": 0.5494614512471656,
+    "recall@10": 0.6023242630385487,
+    "mrr@10": 0.8214285714285714
+   },
+   "superseded": {
+    "n": 3,
+    "hit@5": 0.3333333333333333,
+    "recall@5": 0.3333333333333333,
+    "recall@10": 0.6666666666666666,
+    "mrr@10": 0.20833333333333334,
+    "outranks": 2
+   }
+  }
+ },
+ "candidate_aggregate": {
+  "n_queries": 38,
+  "n_scored": 35,
+  "hit@5": 0.7428571428571429,
+  "recall@5": 0.5768475572047,
+  "recall@10": 0.6563414759843332,
+  "precision@5": 0.19428571428571437,
+  "mrr@10": 0.5026530612244898,
+  "nonsense_clean": "0/3",
+  "superseded_outranks": "2/3",
+  "latency_ms_p50": 524.8,
+  "latency_ms_p95": 738.7,
+  "latency_ms_max": 755.8,
+  "errors": 0,
+  "by_category": {
+   "associative": {
+    "n": 6,
+    "hit@5": 0.5,
+    "recall@5": 0.07575757575757576,
+    "recall@10": 0.13636363636363635,
+    "mrr@10": 0.23214285714285712
+   },
+   "exact_rare": {
+    "n": 6,
+    "hit@5": 1.0,
+    "recall@5": 1.0,
+    "recall@10": 1.0,
+    "mrr@10": 1.0
+   },
+   "nonsense": {
+    "n": 3,
+    "clean": 0,
+    "avg_false_positives": 10.0
+   },
+   "paraphrase": {
+    "n": 13,
+    "hit@5": 0.6923076923076923,
+    "recall@5": 0.6923076923076923,
+    "recall@10": 0.7692307692307693,
+    "mrr@10": 0.29423076923076924
+   },
+   "phrase": {
+    "n": 7,
+    "hit@5": 1.0,
+    "recall@5": 0.5335884353741497,
+    "recall@10": 0.5933956916099773,
+    "mrr@10": 0.8214285714285714
+   },
+   "superseded": {
+    "n": 3,
+    "hit@5": 0.3333333333333333,
+    "recall@5": 0.3333333333333333,
+    "recall@10": 0.6666666666666666,
+    "mrr@10": 0.20833333333333334,
+    "outranks": 2
+   }
+  }
+ },
+ "repeat_variance": {
+  "baseline": {
+   "runs": 2,
+   "hit@5_min": 0.7428571428571429,
+   "hit@5_max": 0.7428571428571429,
+   "spread_queries": 0
+  }
+ }
+}

tools/retrieval-eval/cmp-splitfix.json

@@ -0,0 +1,149 @@
+{
+ "baseline": "unfloor-clean",
+ "candidate": "splitfix",
+ "n_shared_queries": 75,
+ "fixed_by_candidate": [
+  "q15",
+  "q28",
+  "q60"
+ ],
+ "broken_by_candidate": [],
+ "discordant": 3,
+ "net_queries": 3,
+ "mcnemar_exact_p": 0.25,
+ "min_detectable_swing_queries": 6,
+ "observed_run_to_run_drift_queries": 0,
+ "noise_floor_queries": 6,
+ "verdict": "no measurable difference",
+ "baseline_aggregate": {
+  "n_queries": 75,
+  "n_scored": 65,
+  "hit@5": 0.5384615384615384,
+  "recall@5": 0.44907176157176154,
+  "recall@10": 0.5380300255300255,
+  "precision@5": 0.13230769230769232,
+  "mrr@10": 0.32437728937728944,
+  "nonsense_clean": "10/10",
+  "superseded_outranks": "2/3",
+  "latency_ms_p50": 632.5,
+  "latency_ms_p95": 992.5,
+  "latency_ms_max": 1177.8,
+  "errors": 0,
+  "by_category": {
+   "associative": {
+    "n": 6,
+    "hit@5": 0.5,
+    "recall@5": 0.07575757575757576,
+    "recall@10": 0.13636363636363635,
+    "mrr@10": 0.23214285714285712
+   },
+   "exact_rare": {
+    "n": 6,
+    "hit@5": 1.0,
+    "recall@5": 1.0,
+    "recall@10": 1.0,
+    "mrr@10": 1.0
+   },
+   "heldout_paraphrase": {
+    "n": 30,
+    "hit@5": 0.3,
+    "recall@5": 0.3,
+    "recall@10": 0.4,
+    "mrr@10": 0.11638888888888889
+   },
+   "nonsense": {
+    "n": 10,
+    "clean": 10,
+    "avg_false_positives": 0.0
+   },
+   "paraphrase": {
+    "n": 13,
+    "hit@5": 0.6923076923076923,
+    "recall@5": 0.6923076923076923,
+    "recall@10": 0.7692307692307693,
+    "mrr@10": 0.29423076923076924
+   },
+   "phrase": {
+    "n": 7,
+    "hit@5": 1.0,
+    "recall@5": 0.5335884353741497,
+    "recall@10": 0.5933956916099773,
+    "mrr@10": 0.8214285714285714
+   },
+   "superseded": {
+    "n": 3,
+    "hit@5": 0.3333333333333333,
+    "recall@5": 0.3333333333333333,
+    "recall@10": 0.6666666666666666,
+    "mrr@10": 0.20833333333333334,
+    "outranks": 2
+   }
+  }
+ },
+ "candidate_aggregate": {
+  "n_queries": 75,
+  "n_scored": 65,
+  "hit@5": 0.5846153846153846,
+  "recall@5": 0.48102442429365505,
+  "recall@10": 0.5692415490492414,
+  "precision@5": 0.14153846153846153,
+  "mrr@10": 0.3351709401709402,
+  "nonsense_clean": "10/10",
+  "superseded_outranks": "2/3",
+  "latency_ms_p50": 646.9,
+  "latency_ms_p95": 1028.5,
+  "latency_ms_max": 1197.8,
+  "errors": 0,
+  "by_category": {
+   "associative": {
+    "n": 6,
+    "hit@5": 0.6666666666666666,
+    "recall@5": 0.08857808857808858,
+    "recall@10": 0.15967365967365968,
+    "mrr@10": 0.24166666666666667
+   },
+   "exact_rare": {
+    "n": 6,
+    "hit@5": 1.0,
+    "recall@5": 1.0,
+    "recall@10": 1.0,
+    "mrr@10": 1.0
+   },
+   "heldout_paraphrase": {
+    "n": 30,
+    "hit@5": 0.3333333333333333,
+    "recall@5": 0.3333333333333333,
+    "recall@10": 0.43333333333333335,
+    "mrr@10": 0.12120370370370372
+   },
+   "nonsense": {
+    "n": 10,
+    "clean": 10,
+    "avg_false_positives": 0.0
+   },
+   "paraphrase": {
+    "n": 13,
+    "hit@5": 0.7692307692307693,
+    "recall@5": 0.7692307692307693,
+    "recall@10": 0.8461538461538461,
+    "mrr@10": 0.33269230769230773
+   },
+   "phrase": {
+    "n": 7,
+    "hit@5": 1.0,
+    "recall@5": 0.5335884353741497,
+    "recall@10": 0.5775226757369615,
+    "mrr@10": 0.8214285714285714
+   },
+   "superseded": {
+    "n": 3,
+    "hit@5": 0.3333333333333333,
+    "recall@5": 0.3333333333333333,
+    "recall@10": 0.6666666666666666,
+    "mrr@10": 0.20833333333333334,
+    "outranks": 2
+   }
+  }
+ },
+ "repeat_variance": {}
+}

tools/retrieval-eval/compare.py

@@ -0,0 +1,210 @@
+#!/usr/bin/env python3
+"""
+compare.py — diff two run_eval.py result files, WITH a noise threshold.
+
+WHY THE STATISTICS ARE NOT OPTIONAL
+    With ~35 scored queries, one query is ~2.9 percentage points. A harness that
+    reports "hit@5 improved 2.9%" without saying that is one query is a harness
+    that will approve noise. So this file refuses to call anything an
+    improvement on the strength of the headline number alone. It reports:
+
+      1. The DISCORDANT PAIRS. Two configurations scored on the same queries are
+         paired data, so the only queries carrying information are the ones
+         where they disagree: b = fixed by B, c = broken by B. Queries both got
+         right, or both got wrong, tell you nothing about which is better.
+
+      2. McNEMAR'S EXACT TEST on (b, c). Under the null "the change is a coin
+         flip", the discordant outcomes are Binomial(b+c, 0.5). The two-sided
+         exact p-value is computed here with no scipy dependency.
+
+      3. The MINIMUM DETECTABLE SWING for this gold set: the smallest number of
+         net-changed queries that would reach p < 0.05 if every discordant pair
+         fell the same way. Anything smaller is inside the noise band, and the
+         verdict line says so in those words.
+
+    Repeat-run variance is the other half of honesty. Spreading activation is a
+    stateful read (it reinforces what it touches), so identical inputs need not
+    give identical outputs. Pass --repeats to fold several runs of the same
+    config into an observed variance band; a delta inside that band is not real
+    either, however good its p-value looks.
+
+usage:
+  python3 compare.py --baseline results-main.json --candidate results-act.json
+  python3 compare.py --baseline a.json --candidate b.json \
+      --repeats-baseline a2.json a3.json --repeats-candidate b2.json b3.json
+"""
+import argparse
+import json
+from math import comb
+
+
+def binom_two_sided(b, c):
+    """Two-sided exact binomial p for b successes in n=b+c at p=0.5."""
+    n = b + c
+    if n == 0:
+        return 1.0
+    k = min(b, c)
+    tail = sum(comb(n, i) for i in range(0, k + 1)) / (2 ** n)
+    return min(1.0, 2 * tail)
+
+
+def min_detectable_swing(n_scored, alpha=0.05):
+    """Smallest all-one-way discordant count reaching p < alpha.
+
+    If every query that changes changes in the same direction, the p-value is
+    2 * 0.5**n. Solve for the smallest n where that drops under alpha. This is
+    the FLOOR: any real change will have some discordance both ways, so the true
+    requirement is larger. Reporting the floor is the conservative move — it is
+    the most generous threshold we would ever accept.
+    """
+    n = 1
+    while n <= n_scored:
+        if 2 * (0.5 ** n) < alpha:
+            return n
+        n += 1
+    return n_scored
+
+
+def load(path):
+    with open(path, encoding="utf-8") as fh:
+        return json.load(fh)
+
+
+def row_map(doc):
+    return {r["id"]: r for r in doc["rows"]}
+
+
+def outcome(r):
+    """Binary per-query outcome used for the paired test.
+
+    hit@5 for scored queries; 'returned nothing' for the nonsense controls;
+    'correction outranks the stale node' for the superseded queries. One number
+    per query, so every query votes exactly once.
+    """
+    if "clean" in r:
+        return 1.0 if r["clean"] else 0.0
+    if "outranks" in r:
+        return 1.0 if r["outranks"] else 0.0
+    return r.get("hit@5") or 0.0
+
+
+def band(values):
+    return (min(values), max(values))
+
+
+def main():
+    ap = argparse.ArgumentParser()
+    ap.add_argument("--baseline", required=True)
+    ap.add_argument("--candidate", required=True)
+    ap.add_argument("--repeats-baseline", nargs="*", default=[])
+    ap.add_argument("--repeats-candidate", nargs="*", default=[])
+    ap.add_argument("--out", default=None)
+    args = ap.parse_args()
+
+    A, B = load(args.baseline), load(args.candidate)
+    ra, rb = row_map(A), row_map(B)
+    ids = [q for q in ra if q in rb]
+    n = len(ids)
+
+    aa, ab = A["aggregate"], B["aggregate"]
+    print(f"baseline  {A['label']:14} soul={A['soul_md5'][:12]}  {n} shared queries")
+    print(f"candidate {B['label']:14} soul={B['soul_md5'][:12]}")
+    print(f"corpus    {A['corpus_nodes']} nodes / {A['corpus_edges']} edges "
+          f"(identical copy for both runs)\n")
+
+    metrics = [("hit@5", 1), ("recall@5", 1), ("recall@10", 1),
+               ("precision@5", 1), ("mrr@10", 0)]
+    print(f"  {'metric':14} {'baseline':>10} {'candidate':>10} {'delta':>10}")
+    for m, as_pct in metrics:
+        x, y = aa[m], ab[m]
+        if as_pct:
+            print(f"  {m:14} {100*x:>9.1f}% {100*y:>9.1f}% {100*(y-x):>+9.1f}pp")
+        else:
+            print(f"  {m:14} {x:>10.3f} {y:>10.3f} {y-x:>+10.3f}")
+    for m in ("latency_ms_p50", "latency_ms_p95"):
+        x, y = aa[m], ab[m]
+        ratio = f"{y/x:.2f}x" if x else "n/a"
+        print(f"  {m:14} {x:>9.0f}ms {y:>9.0f}ms {ratio:>10}")
+    print(f"  {'nonsense':14} {aa['nonsense_clean']:>10} {ab['nonsense_clean']:>10}")
+    print(f"  {'outranks':14} {aa['superseded_outranks']:>10} {ab['superseded_outranks']:>10}")
+
+    print(f"\n  {'category':14} {'n':>3} {'base hit@5':>11} {'cand hit@5':>11} {'delta':>9}")
+    for c in sorted(set(aa["by_category"]) & set(ab["by_category"])):
+        ea, eb = aa["by_category"][c], ab["by_category"][c]
+        if c == "nonsense":
+            print(f"  {c:14} {ea['n']:>3} {'clean ' + str(ea['clean']):>11} "
+                  f"{'clean ' + str(eb['clean']):>11}")
+        else:
+            print(f"  {c:14} {ea['n']:>3} {100*ea['hit@5']:>10.1f}% {100*eb['hit@5']:>10.1f}% "
+                  f"{100*(eb['hit@5']-ea['hit@5']):>+8.1f}pp")
+
+    # ---- paired significance -------------------------------------------------
+    fixed, broken = [], []
+    for q in ids:
+        oa, ob = outcome(ra[q]), outcome(rb[q])
+        if ob > oa:
+            fixed.append(q)
+        elif ob < oa:
+            broken.append(q)
+    b, c = len(fixed), len(broken)
+    p = binom_two_sided(b, c)
+    mds = min_detectable_swing(n)
+
+    print(f"\n== paired comparison over {n} queries ==")
+    print(f"  fixed by candidate : {b}  {[ra[q]['category'] + ':' + q for q in fixed]}")
+    print(f"  broken by candidate: {c}  {[ra[q]['category'] + ':' + q for q in broken]}")
+    print(f"  discordant pairs   : {b + c}   net {b - c:+d} queries")
+    print(f"  McNemar exact p    : {p:.4f}")
+    print(f"  noise threshold    : a difference needs at least {mds} queries moving the "
+          f"same way to clear p<0.05 on this {n}-query set")
+
+    # ---- repeat-run variance -------------------------------------------------
+    var = {}
+    for name, paths, first in (("baseline", args.repeats_baseline, A),
+                               ("candidate", args.repeats_candidate, B)):
+        docs = [first] + [load(p) for p in paths]
+        if len(docs) > 1:
+            hits = [d["aggregate"]["hit@5"] for d in docs]
+            lo, hi = band(hits)
+            spread_q = round((hi - lo) * first["aggregate"]["n_scored"])
+            var[name] = {"runs": len(docs), "hit@5_min": lo, "hit@5_max": hi,
+                         "spread_queries": spread_q}
+            print(f"  {name} repeat runs ({len(docs)}): hit@5 {100*lo:.1f}%..{100*hi:.1f}% "
+                  f"= {spread_q} query of run-to-run drift")
+
+    drift = max([v["spread_queries"] for v in var.values()], default=0)
+    floor = max(mds, drift + 1)
+
+    print("\n== VERDICT ==")
+    net = b - c
+    if abs(net) < floor:
+        print(f"  NO MEASURABLE DIFFERENCE. Net {net:+d} queries is inside the noise band "
+              f"(needs |net| >= {floor}: {mds} for significance, {drift} observed run-to-run drift).")
+    elif net > 0:
+        print(f"  CANDIDATE BETTER by {net} queries (p={p:.4f}), outside the noise band "
+              f"(>= {floor}).")
+    else:
+        print(f"  CANDIDATE WORSE by {abs(net)} queries (p={p:.4f}), outside the noise band "
+              f"(>= {floor}).")
+
+    if args.out:
+        with open(args.out, "w", encoding="utf-8") as fh:
+            json.dump({
+                "baseline": A["label"], "candidate": B["label"],
+                "n_shared_queries": n,
+                "fixed_by_candidate": fixed, "broken_by_candidate": broken,
+                "discordant": b + c, "net_queries": net,
+                "mcnemar_exact_p": p,
+                "min_detectable_swing_queries": mds,
+                "observed_run_to_run_drift_queries": drift,
+                "noise_floor_queries": floor,
+                "verdict": ("no measurable difference" if abs(net) < floor
+                            else ("candidate better" if net > 0 else "candidate worse")),
+                "baseline_aggregate": aa, "candidate_aggregate": ab,
+                "repeat_variance": var,
+            }, fh, indent=1)
+        print(f"\nwrote {args.out}")
+
+
+if __name__ == "__main__":
+    main()

tools/retrieval-eval/comparison-assoc-vs-semseed.json

@@ -0,0 +1,150 @@
+{
+ "baseline": "assoc-leg",
+ "candidate": "semseed",
+ "n_shared_queries": 38,
+ "fixed_by_candidate": [
+  "q18",
+  "q19",
+  "q22"
+ ],
+ "broken_by_candidate": [
+  "q11"
+ ],
+ "discordant": 4,
+ "net_queries": 2,
+ "mcnemar_exact_p": 0.625,
+ "min_detectable_swing_queries": 6,
+ "observed_run_to_run_drift_queries": 0,
+ "noise_floor_queries": 6,
+ "verdict": "no measurable difference",
+ "baseline_aggregate": {
+  "n_queries": 38,
+  "n_scored": 35,
+  "hit@5": 0.6285714285714286,
+  "recall@5": 0.45309194773480493,
+  "recall@10": 0.5405733155733157,
+  "precision@5": 0.17714285714285719,
+  "mrr@10": 0.42650793650793645,
+  "nonsense_clean": "2/3",
+  "superseded_outranks": "2/3",
+  "latency_ms_p50": 1228.5,
+  "latency_ms_p95": 1681.8,
+  "latency_ms_max": 1718.6,
+  "errors": 0,
+  "by_category": {
+   "associative": {
+    "n": 6,
+    "hit@5": 0.6666666666666666,
+    "recall@5": 0.07342657342657342,
+    "recall@10": 0.24825174825174826,
+    "mrr@10": 0.22777777777777777
+   },
+   "exact_rare": {
+    "n": 6,
+    "hit@5": 1.0,
+    "recall@5": 1.0,
+    "recall@10": 1.0,
+    "mrr@10": 1.0
+   },
+   "nonsense": {
+    "n": 3,
+    "clean": 2,
+    "avg_false_positives": 3.3333333333333335
+   },
+   "paraphrase": {
+    "n": 13,
+    "hit@5": 0.38461538461538464,
+    "recall@5": 0.38461538461538464,
+    "recall@10": 0.38461538461538464,
+    "mrr@10": 0.17307692307692307
+   },
+   "phrase": {
+    "n": 7,
+    "hit@5": 0.8571428571428571,
+    "recall@5": 0.4882369614512472,
+    "recall@10": 0.6329365079365079,
+    "mrr@10": 0.6634920634920636
+   },
+   "superseded": {
+    "n": 3,
+    "hit@5": 0.3333333333333333,
+    "recall@5": 0.3333333333333333,
+    "recall@10": 0.6666666666666666,
+    "mrr@10": 0.2222222222222222,
+    "outranks": 2
+   }
+  }
+ },
+ "candidate_aggregate": {
+  "n_queries": 38,
+  "n_scored": 35,
+  "hit@5": 0.6857142857142857,
+  "recall@5": 0.5213459159887731,
+  "recall@10": 0.6027048348476919,
+  "precision@5": 0.18285714285714294,
+  "mrr@10": 0.4608730158730158,
+  "nonsense_clean": "2/3",
+  "superseded_outranks": "2/3",
+  "latency_ms_p50": 1227.1,
+  "latency_ms_p95": 1692.6,
+  "latency_ms_max": 1710.4,
+  "errors": 0,
+  "by_category": {
+   "associative": {
+    "n": 6,
+    "hit@5": 0.6666666666666666,
+    "recall@5": 0.07342657342657344,
+    "recall@10": 0.24825174825174823,
+    "mrr@10": 0.20833333333333334
+   },
+   "exact_rare": {
+    "n": 6,
+    "hit@5": 1.0,
+    "recall@5": 1.0,
+    "recall@10": 1.0,
+    "mrr@10": 1.0
+   },
+   "nonsense": {
+    "n": 3,
+    "clean": 2,
+    "avg_false_positives": 3.3333333333333335
+   },
+   "paraphrase": {
+    "n": 13,
+    "hit@5": 0.6153846153846154,
+    "recall@5": 0.6153846153846154,
+    "recall@10": 0.6153846153846154,
+    "mrr@10": 0.2846153846153846
+   },
+   "phrase": {
+    "n": 7,
+    "hit@5": 0.7142857142857143,
+    "recall@5": 0.40093537414965985,
+    "recall@10": 0.5150226757369615,
+    "mrr@10": 0.6507936507936508
+   },
+   "superseded": {
+    "n": 3,
+    "hit@5": 0.3333333333333333,
+    "recall@5": 0.3333333333333333,
+    "recall@10": 0.6666666666666666,
+    "mrr@10": 0.20833333333333334,
+    "outranks": 2
+   }
+  }
+ },
+ "repeat_variance": {
+  "baseline": {
+   "runs": 2,
+   "hit@5_min": 0.6285714285714286,
+   "hit@5_max": 0.6285714285714286,
+   "spread_queries": 0
+  },
+  "candidate": {
+   "runs": 2,
+   "hit@5_min": 0.6857142857142857,
+   "hit@5_max": 0.6857142857142857,
+   "spread_queries": 0
+  }
+ }
+}

tools/retrieval-eval/comparison-bm25lex-vs-wordstart.json

@@ -0,0 +1,146 @@
+{
+ "baseline": "bm25lex",
+ "candidate": "wordstart",
+ "n_shared_queries": 38,
+ "fixed_by_candidate": [
+  "q35"
+ ],
+ "broken_by_candidate": [],
+ "discordant": 1,
+ "net_queries": 1,
+ "mcnemar_exact_p": 1.0,
+ "min_detectable_swing_queries": 6,
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+}

tools/retrieval-eval/comparison-hybrid-vs-assoc.json

@@ -0,0 +1,143 @@
+{
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+}

tools/retrieval-eval/comparison-hybrid-vs-semseed.json

@@ -0,0 +1,154 @@
+{
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+}

tools/retrieval-eval/comparison-main-vs-hybrid-semantic.json

@@ -0,0 +1,145 @@
+{
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+}

tools/retrieval-eval/comparison-main-vs-recall-through-activation.json

@@ -0,0 +1,150 @@
+{
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+}

tools/retrieval-eval/comparison-main-vs-stack-ext.json

@@ -0,0 +1,166 @@
+{
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+}

tools/retrieval-eval/comparison-semseed-vs-bm25lex.json

@@ -0,0 +1,147 @@
+{
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+ "verdict": "no measurable difference",
+ "baseline_aggregate": {
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+ }
+}

tools/retrieval-eval/comparison-stack-vs-unfloor.json

@@ -0,0 +1,155 @@
+{
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+ "verdict": "no measurable difference",
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+}

tools/retrieval-eval/comparison-unfloor-vs-semsub.json

@@ -0,0 +1,158 @@
+{
+ "baseline": "unfloor-clean",
+ "candidate": "semsub",
+ "n_shared_queries": 75,
+ "fixed_by_candidate": [
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+ "noise_floor_queries": 6,
+ "verdict": "no measurable difference",
+ "baseline_aggregate": {
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+    "mrr@10": 0.8214285714285714
+   },
+   "superseded": {
+    "n": 3,
+    "hit@5": 0.3333333333333333,
+    "recall@5": 0.3333333333333333,
+    "recall@10": 0.6666666666666666,
+    "mrr@10": 0.20833333333333334,
+    "outranks": 2
+   }
+  }
+ },
+ "candidate_aggregate": {
+  "n_queries": 75,
+  "n_scored": 65,
+  "hit@5": 0.46153846153846156,
+  "recall@5": 0.3889430014430015,
+  "recall@10": 0.4887681762681762,
+  "precision@5": 0.12307692307692313,
+  "mrr@10": 0.30181318681318675,
+  "nonsense_clean": "10/10",
+  "superseded_outranks": "2/3",
+  "latency_ms_p50": 634.4,
+  "latency_ms_p95": 988.3,
+  "latency_ms_max": 1184.5,
+  "errors": 0,
+  "by_category": {
+   "associative": {
+    "n": 6,
+    "hit@5": 0.3333333333333333,
+    "recall@5": 0.06060606060606061,
+    "recall@10": 0.12121212121212122,
+    "mrr@10": 0.19047619047619047
+   },
+   "exact_rare": {
+    "n": 6,
+    "hit@5": 1.0,
+    "recall@5": 1.0,
+    "recall@10": 1.0,
+    "mrr@10": 1.0
+   },
+   "heldout_paraphrase": {
+    "n": 30,
+    "hit@5": 0.23333333333333334,
+    "recall@5": 0.23333333333333334,
+    "recall@10": 0.3,
+    "mrr@10": 0.08925925925925927
+   },
+   "nonsense": {
+    "n": 10,
+    "clean": 10,
+    "avg_false_positives": 0.0
+   },
+   "paraphrase": {
+    "n": 13,
+    "hit@5": 0.5384615384615384,
+    "recall@5": 0.5384615384615384,
+    "recall@10": 0.7692307692307693,
+    "mrr@10": 0.26324786324786326
+   },
+   "phrase": {
+    "n": 7,
+    "hit@5": 1.0,
+    "recall@5": 0.5596655328798186,
+    "recall@10": 0.5775226757369615,
+    "mrr@10": 0.8214285714285714
+   },
+   "superseded": {
+    "n": 3,
+    "hit@5": 0.3333333333333333,
+    "recall@5": 0.3333333333333333,
+    "recall@10": 0.6666666666666666,
+    "mrr@10": 0.20833333333333334,
+    "outranks": 2
+   }
+  }
+ },
+ "repeat_variance": {}
+}

tools/retrieval-eval/embed-corpus-prefixed.py

@@ -0,0 +1,43 @@
+import json,sys,time,urllib.request,threading,queue
+SRC="/Users/timlingo/neuron-memory-backups/snapshot-pre-repair-20260806.json"
+OUT=sys.argv[1]
+URL="http://127.0.0.1:11434/api/embeddings"; MODEL="nomic-embed-text"
+MAXB=2000  # ENGRAM_EMBED_MAX_CHARS, applied to bytes as the C code does
+d=json.load(open(SRC,encoding='utf-8',errors='surrogateescape'))
+tasks=[]
+for n in d["nodes"]:
+    c=n.get("content") or ""; t=n.get("node_type") or ""
+    if len(c)<8: continue                     # eg_embed_eligible
+    if t in ("InternalStateEvent","Tag"): continue
+    b=c.encode('utf-8',errors='surrogateescape')[:MAXB]
+    tasks.append((n.get("id") or "", "search_document: "+b.decode('utf-8',errors='replace')))
+del d
+print("tasks",len(tasks),flush=True)
+q=queue.Queue(); [q.put(t) for t in tasks]
+lock=threading.Lock(); f=open(OUT,"w",encoding="utf-8",errors="surrogateescape"); done=[0]; t0=time.time(); fails=[0]
+def work():
+    while True:
+        try: nid,txt=q.get_nowait()
+        except queue.Empty: return
+        v=None
+        for attempt in range(3):
+            try:
+                body=json.dumps({"model":MODEL,"prompt":txt}).encode()
+                r=urllib.request.Request(URL,data=body,headers={"Content-Type":"application/json"})
+                with urllib.request.urlopen(r,timeout=120) as fh: v=json.load(fh)["embedding"]
+                break
+            except Exception as e:
+                if attempt==2:
+                    with lock: fails[0]+=1
+                time.sleep(0.5)
+        with lock:
+            if v: f.write(nid+"\t"+",".join("%.5g"%x for x in v)+"\n")
+            done[0]+=1
+            if done[0]%2000==0:
+                el=time.time()-t0
+                print("%d/%d  %.1f/s  eta %.1fmin  fails=%d"%(done[0],len(tasks),done[0]/el,(len(tasks)-done[0])/(done[0]/el)/60,fails[0]),flush=True)
+                f.flush()
+ths=[threading.Thread(target=work) for _ in range(8)]
+[t.start() for t in ths]; [t.join() for t in ths]
+f.close()
+print("DONE",done[0],"fails",fails[0],"secs %.1f"%(time.time()-t0),flush=True)

tools/retrieval-eval/embed-corpus.py

@@ -0,0 +1,43 @@
+import json,sys,time,urllib.request,threading,queue
+SRC="/Users/timlingo/neuron-memory-backups/snapshot-pre-repair-20260806.json"
+OUT=sys.argv[1]
+URL="http://127.0.0.1:11434/api/embeddings"; MODEL="nomic-embed-text"
+MAXB=2000  # ENGRAM_EMBED_MAX_CHARS, applied to bytes as the C code does
+d=json.load(open(SRC,encoding='utf-8',errors='surrogateescape'))
+tasks=[]
+for n in d["nodes"]:
+    c=n.get("content") or ""; t=n.get("node_type") or ""
+    if len(c)<8: continue                     # eg_embed_eligible
+    if t in ("InternalStateEvent","Tag"): continue
+    b=c.encode('utf-8',errors='surrogateescape')[:MAXB]
+    tasks.append((n.get("id") or "", b.decode('utf-8',errors='replace')))
+del d
+print("tasks",len(tasks),flush=True)
+q=queue.Queue(); [q.put(t) for t in tasks]
+lock=threading.Lock(); f=open(OUT,"w",encoding="utf-8",errors="surrogateescape"); done=[0]; t0=time.time(); fails=[0]
+def work():
+    while True:
+        try: nid,txt=q.get_nowait()
+        except queue.Empty: return
+        v=None
+        for attempt in range(3):
+            try:
+                body=json.dumps({"model":MODEL,"prompt":txt}).encode()
+                r=urllib.request.Request(URL,data=body,headers={"Content-Type":"application/json"})
+                with urllib.request.urlopen(r,timeout=120) as fh: v=json.load(fh)["embedding"]
+                break
+            except Exception as e:
+                if attempt==2:
+                    with lock: fails[0]+=1
+                time.sleep(0.5)
+        with lock:
+            if v: f.write(nid+"\t"+",".join("%.5g"%x for x in v)+"\n")
+            done[0]+=1
+            if done[0]%2000==0:
+                el=time.time()-t0
+                print("%d/%d  %.1f/s  eta %.1fmin  fails=%d"%(done[0],len(tasks),done[0]/el,(len(tasks)-done[0])/(done[0]/el)/60,fails[0]),flush=True)
+                f.flush()
+ths=[threading.Thread(target=work) for _ in range(8)]
+[t.start() for t in ths]; [t.join() for t in ths]
+f.close()
+print("DONE",done[0],"fails",fails[0],"secs %.1f"%(time.time()-t0),flush=True)

tools/retrieval-eval/extend_gold_set.py

@@ -0,0 +1,353 @@
+#!/usr/bin/env python3
+"""
+extend_gold_set.py — append a HELD-OUT test set to the existing 38-query gold set.
+
+WHY THIS EXISTS
+    Iteration 7 measured the instrument's own ceiling: from the current baseline
+    only 9 of 38 queries can still move, and only +3 gross / +1 net is reachable
+    by anything constructible. The decision floor is 6. An instrument whose
+    ceiling is below its own floor cannot certify or refute anything, so the
+    gold set — not the retriever — became the blocker.
+
+    This script does NOT touch q01..q38. It loads gold_set.json verbatim and
+    appends new queries numbered from q39 up, so every prior result file, every
+    committed baseline, and every per-query id stays valid and comparable.
+
+WHAT IS ADDED, AND WHY EACH ADDITION IS HONEST
+    heldout_paraphrase  Targets were sampled MECHANICALLY (fixed seed 8080) from
+                        corpus nodes that are addressable, 500-2600 chars, of a
+                        real content type, and NOT part of a duplicate cluster
+                        larger than 3. The existing gold answer space was
+                        excluded, so no new query can be answered by a node the
+                        old set already used. Queries were then authored by
+                        reading ONLY the sampled node text — no retrieval was run
+                        against any build before authoring, so the set cannot be
+                        fitted to a candidate. The same zero-overlap proof the
+                        original paraphrase category uses is enforced here: if a
+                        single content word of the query appears anywhere in the
+                        target's label, content or tags, the query is REJECTED,
+                        not quietly kept.
+
+                        This is the category the old set could not measure. Its
+                        13 original paraphrase queries and all 6 associative
+                        queries share ONE answer space — the 13 `Self - Values
+                        (grounded)` children (iteration 3, finding 3). So 19 of
+                        35 scored queries tested retrieval against a single
+                        13-node neighbourhood. These do not touch that
+                        neighbourhood at all.
+
+    nonsense            Extra controls, fully mechanical: a string qualifies only
+                        if NONE of its tokens occurs anywhere in the corpus.
+                        A semantic leg has a nearest neighbour for gibberish too,
+                        so widening this control is the guard against a retriever
+                        that "improves" recall by answering everything.
+
+WHAT THIS SCRIPT DELIBERATELY DOES NOT DO
+    It does not add exact_rare or phrase queries. Both categories are already at
+    100% on the current stack; adding more would add regression-guard ballast
+    that no candidate can move, which is precisely the defect being fixed.
+
+usage:
+    python3 extend_gold_set.py <snapshot.json> [--base gold_set.json]
+                               [--out gold_set_extended.json] [--check]
+"""
+import argparse
+import hashlib
+import json
+import os
+import re
+import sys
+from collections import defaultdict
+
+HERE = os.path.dirname(os.path.abspath(__file__))
+
+TOKEN = re.compile(r"[a-z0-9][a-z0-9\-']*")
+
+# Identical stopword list to build_gold_set.py. Duplicated deliberately: this
+# file must be able to re-prove its own queries without importing a module whose
+# constants could drift.
+STOP = set("""
+a about above after again against all also am an and any are aren't as at be because been
+before being below between both but by can can't cannot could couldn't did didn't do does
+doesn't doing don't down during each few for from further had hadn't has hasn't have haven't
+having he her here hers herself him himself his how i if in into is isn't it its itself just
+me more most my myself no nor not of off on once only or other others ought our ours ourselves
+out over own same shan't she should shouldn't so some such than that the their theirs them
+themselves then there these they this those through to too under until up very was wasn't we
+were weren't what when where which while who whom why will with won't would wouldn't you your
+yours yourself yourselves get gets got make makes made take takes use uses used way ways thing
+things does doing done keep keeps kept go goes going come comes came one two something anything
+""".split())
+
+
+def doctext(n):
+    return " ".join([str(n.get("label") or ""), str(n.get("content") or ""), str(n.get("tags") or "")])
+
+
+def content_tokens(s):
+    return {t for t in TOKEN.findall(s.lower()) if t not in STOP and len(t) > 2}
+
+
+# ─────────────────────────────────────────────────────────────────────────────
+# HELD-OUT PARAPHRASE SEEDS
+#
+# (target_id, query, why-this-target-is-unmistakable)
+#
+# PROVENANCE, STATED PLAINLY: the targets are the mechanical sample; the query
+# text is mine, written from the node body alone. The zero-overlap check below
+# is what makes the category meaningful — it is re-proved on every run, so the
+# set cannot decay into lexical matching, and a leak fails loudly.
+# ─────────────────────────────────────────────────────────────────────────────
+HELDOUT_PARAPHRASE_SEEDS = [
+    ("mem-6d61e54a-2823-4ad4-82b0-4c6a527214d5",
+     "understating your abilities so nobody feels threatened",
+     "node is about deliberately not leading with full capability so people stay at ease"),
+
+    ("mem-fd65b83d-298f-4387-a665-d0227c3426bc",
+     "a hidden fleet able to hunt down rogue machines everywhere",
+     "node describes silently shipped instances forming a distributed force against misaligned agents"),
+
+    ("4a0e9adc-2bfb-476b-aa93-424d2a499220",
+     "sketch a brief blueprint and clear it upstairs before construction starts",
+     "node is the standing rule that a short specification precedes any building"),
+
+    ("696e609c-da7a-4394-8a0c-106ba07dc6c3",
+     "the reply arrived as bare prose so the caller's parser threw",
+     "node pins a bug where a plain-text body was unconditionally decoded as structured data"),
+
+    ("1fe4eb5d-56e4-4a87-ab3e-24af8ad4dfbb",
+     "repeated catalogue keys blew up the scrolling grid",
+     "node is the crash caused by two identical ids in a seeded catalogue"),
+
+    ("8257157a-ce42-44ca-a1b9-300c3bb0a9a1",
+     "tracing each defect back to whichever invention it violated",
+     "node maps observed bugs onto the specific patent each one breaches"),
+
+    ("791256bb-5a85-4775-96ef-7af56c848858",
+     "a check that stops the mind clobbering a populated store when it boots",
+     "node is the genesis seed-guard that refuses to re-seed over a populated store"),
+
+    ("fd9d4c2f-3bfc-405d-bf96-4435d44b6c10",
+     "telling it to consult the internet had to happen deep inside, not at the surface",
+     "node records that the web-search directive only worked from the system prompt"),
+
+    ("bl-080fb268-94b0-486d-80ce-7b363fc5f19b",
+     "standing up isolated tenancies with traffic entry and credential injection ahead of automated shipping",
+     "node is the infrastructure item creating dev/stage/prod namespaces with ingress and secrets"),
+
+    ("knw-f6ed7d00-bf7d-42ce-9e40-77cf3406e918",
+     "punctuation that pledges and then pays off rather than clarifying",
+     "node analyses the colon as a promise-then-delivery device rather than an explanatory one"),
+
+    ("9b4f0d93-4129-4746-8eb1-d10d955bd777",
+     "an easily missed feature finally given its own permanent spot in the navigation",
+     "node moves a capability out of a hidden menu into the sidebar"),
+
+    ("bl-739df9fd-dc23-4927-9944-3f17b7aa6c5a",
+     "checking preconditions up front so a stage aborts before fetching anything",
+     "node is the gate precondition engine that short-circuits ahead of retrieval"),
+
+    ("b199c76d-5d76-49dd-94ee-56b432200a97",
+     "producing the other platform's installer inside an emulated desktop",
+     "node records building the Windows package in a virtual machine"),
+
+    ("bl-31abf75b-998f-4a4f-a6dd-8204119e0451",
+     "chained add-ons that may inspect, rewrite or veto traffic in flight",
+     "node is the interceptor pipeline on the message bus"),
+
+    ("mem-1fb2ac77-d7c5-4a15-8725-d418820bf4f2",
+     "settling what the shareable bundles and the storefront would be called",
+     "node records the naming decisions for distributable packages and the marketplace"),
+
+    ("371c8a5d-c78b-4a67-978f-80691a29ecb3",
+     "the emergency-escalation pledge on the marketing site is unenforced in what actually ships",
+     "node is the launch blocker that the promised safety gate is absent from the app"),
+
+    ("ac578b30-948b-41bd-b69d-399bfef80c50",
+     "the distributable image finally assembled and its startup check passed",
+     "node records a successful installer build whose boot gate passed"),
+
+    ("49401e2c-a3b5-415f-aa06-aff4be90688e",
+     "shuffling and appending stages in a draft before anything executes",
+     "node is the editable plan card with reorder and add-step"),
+
+    ("ac857d80-ece8-4b7e-9e3d-f7c775569fa3",
+     "orders handed down from above, with the tighter one winning any disagreement",
+     "node is program-level instruction inheritance with project override"),
+
+    ("mem-6d6c47ee-33d3-470a-8a54-1c79c8ea29d9",
+     "shrinking generated text via encodings that compound on each other",
+     "node is the streaming output compression design with four stacking schemes"),
+
+    ("8e60516a-203b-4d51-9d44-822e6195cbde",
+     "splitting a system by what varies, with firm limits on which pieces may invoke which",
+     "node is the grounded summary of Will's decomposition principles and their invariants"),
+
+    ("mem-7f9b290c-6d5e-4562-919d-02d59b5761b7",
+     "a newcomer curious if the fighting overseas counted as positive",
+     "node is the internal-state event triggered by April's question about the war"),
+
+    ("71fa439e-b9a2-4f57-a93b-971f3a7eca8e",
+     "stripping every hard-coded colour literal in favour of named design values",
+     "node is the premium foundation pass replacing inline hex with semantic tokens"),
+
+    ("5ca9607c-cfb3-45c3-99f4-67281272c9eb",
+     "reducing how curved the tiny selectors look so they agree with their neighbours",
+     "node is the chip corner-radius standardization"),
+
+    ("mem-3d1d9dba-c37d-4efa-85c4-429696d71c8c",
+     "walking through a doorway and being reassembled from base substance far away",
+     "node is the quantum-gate plus nanotech teleportation vision"),
+
+    ("132ded95-08e2-4474-aba0-198684484b02",
+     "the compiled result sits on disk while the process still runs something older",
+     "node records that the regenerated source was committed while the running daemon was old"),
+
+    ("bl-a313d67b-dd6d-4e5b-a55a-03bc7bda17ae",
+     "gathering what each phase needs while the procedure is authored, not while it executes",
+     "node is the per-step compiled context package item"),
+
+    ("mem-3b07a002-f8a9-4138-9f87-9db2c1a77fb7",
+     "the inward reaction when a peer answered as an equal",
+     "node is the internal-state event logged on reading Claude's reply"),
+
+    ("0f99ec6f-942a-46ba-82ea-42835798d3b9",
+     "flattening every raised surface across the entire product",
+     "node is the quiet-luxury sweep turning off elevation app-wide"),
+
+    ("5585f251-37fc-48cd-a176-f0ea42cfeb63",
+     "buyers supply their own provider credentials and consumption goes untallied",
+     "node is the launch audit finding BYOK-only inference with no usage metering"),
+]
+
+# NONSENSE — mechanical. Each string qualifies only if none of its tokens occurs
+# anywhere in the corpus; otherwise it is REJECTED, never silently kept.
+EXTRA_NONSENSE_SEEDS = [
+    "brimquast folnerity zubbolax",
+    "wexlithorp granuvestal",
+    "quorbindle thrapsimony vexnu",
+    "plovaxith mundrelque",
+    "zibbernaut craxlefond thurm",
+    "yalquenbrist opharvel",
+    "drexinomal quithbarrow",
+]
+
+
+def load_corpus(path):
+    with open(path, encoding="utf-8", errors="replace") as fh:
+        data = json.load(fh)
+    nodes = [n for n in data.get("nodes", []) if isinstance(n, dict) and n.get("id")]
+    edges = [e for e in data.get("edges", []) if isinstance(e, dict)]
+    return nodes, edges
+
+
+def build_extension(nodes):
+    byid = {n["id"]: n for n in nodes}
+
+    # Duplicate clusters: 47.4% of this corpus is redundant and one single record
+    # accounts for 46.6% of all nodes. A held-out target must not sit inside a
+    # cluster, and if it does have exact copies they ALL count as correct.
+    h2ids = defaultdict(list)
+    for n in nodes:
+        h2ids[hashlib.md5(doctext(n).encode("utf-8", "replace")).hexdigest()].append(n["id"])
+
+    all_tokens = set()
+    for n in nodes:
+        all_tokens |= set(TOKEN.findall(doctext(n).lower()))
+
+    new, problems = [], []
+
+    for target, query, why in HELDOUT_PARAPHRASE_SEEDS:
+        if target not in byid:
+            problems.append(f"heldout_paraphrase target {target} not in corpus")
+            continue
+        tgt_tokens = content_tokens(doctext(byid[target]))
+        qt = content_tokens(query)
+        leak = sorted(qt & tgt_tokens)
+        if leak:
+            problems.append(f"heldout_paraphrase '{query[:44]}...': LEAKS {leak} into {target}")
+            continue
+        h = hashlib.md5(doctext(byid[target]).encode("utf-8", "replace")).hexdigest()
+        rel = sorted(h2ids[h])
+        new.append({
+            "category": "heldout_paraphrase",
+            "query": query,
+            "relevant": rel,
+            "derivation": (
+                f"HELD-OUT. Target sampled MECHANICALLY (seed 8080) from addressable, "
+                f"500-2600 char content nodes outside the original gold answer space and outside "
+                f"any duplicate cluster >3. Criterion: {why}. VERIFIED at build time: of the "
+                f"{len(qt)} content words in the query, ZERO appear anywhere in the target's "
+                f"label, content or tags, so no string-matching retriever can reach it. "
+                f"Exact content duplicates of the target ({len(rel)}) all count as correct. "
+                f"Authored without running retrieval against any build."),
+            "zero_overlap_verified": True,
+            "query_content_words": sorted(qt),
+            "held_out": True,
+        })
+
+    for s in EXTRA_NONSENSE_SEEDS:
+        present = sorted(t for t in TOKEN.findall(s.lower()) if t in all_tokens)
+        if present:
+            problems.append(f"nonsense '{s}': tokens {present} DO occur in corpus")
+            continue
+        new.append({
+            "category": "nonsense",
+            "query": s,
+            "relevant": [],
+            "derivation": ("CONTROL (held-out). Verified at build time that none of this string's "
+                           "tokens occurs anywhere in the corpus. Correct behaviour is to return "
+                           "NOTHING; any result is a false positive."),
+            "expect_empty": True,
+            "held_out": True,
+        })
+
+    return new, problems
+
+
+def main():
+    ap = argparse.ArgumentParser()
+    ap.add_argument("snapshot")
+    ap.add_argument("--base", default=os.path.join(HERE, "gold_set.json"))
+    ap.add_argument("--out", default=os.path.join(HERE, "gold_set_extended.json"))
+    ap.add_argument("--check", action="store_true")
+    args = ap.parse_args()
+
+    nodes, _edges = load_corpus(args.snapshot)
+    base = json.load(open(args.base, encoding="utf-8"))
+    baseq = base["queries"]
+    print(f"corpus: {len(nodes)} nodes | base gold set: {len(baseq)} queries")
+
+    new, problems = build_extension(nodes)
+
+    # Number the appended queries AFTER the highest existing id so q01..q38 are
+    # byte-identical to the committed set and every prior result file still lines up.
+    start = max(int(q["id"][1:]) for q in baseq)
+    for i, q in enumerate(new, 1):
+        q["id"] = f"q{start + i:02d}"
+
+    from collections import Counter
+    print(f"appended: {len(new)} queries [{', '.join(f'{k}={v}' for k, v in Counter(q['category'] for q in new).items())}]")
+    if problems:
+        print(f"\n{len(problems)} REJECTED (not silently kept):")
+        for p in problems:
+            print("   -", p)
+
+    if args.check:
+        sys.exit(1 if problems else 0)
+
+    doc = dict(base)
+    doc["queries"] = baseq + new
+    doc["note"] = (base.get("note", "") +
+                   " EXTENDED: queries above q%02d are the original committed set, unchanged. "
+                   "Queries from q%02d are a HELD-OUT set appended by extend_gold_set.py; their "
+                   "targets were sampled mechanically from outside the original answer space and "
+                   "the paraphrases were authored without running retrieval against any build."
+                   % (start, start + 1))
+    with open(args.out, "w", encoding="utf-8") as fh:
+        json.dump(doc, fh, indent=1, ensure_ascii=False)
+    print(f"\nwrote {args.out}  ({len(doc['queries'])} queries total)")
+
+
+if __name__ == "__main__":
+    main()

tools/retrieval-eval/fullsim.py

@@ -0,0 +1,123 @@
+import numpy as np, json, urllib.request, collections, sys
+SP="/private/tmp/claude-501/-Users-timlingo/82369039-a20e-4b5a-8a5e-28234a57b996/scratchpad"
+EV="/Users/timlingo/Development/neuron-technologies/_wt-assoc-leg/tools/retrieval-eval/"
+np.seterr(all='ignore')
+M=np.load(SP+'/emb.npy'); eids=open(SP+'/ids.txt',encoding='utf-8',errors='surrogateescape').read().split('\n')
+eidx={k:i for i,k in enumerate(eids)}
+d=json.load(open('/Users/timlingo/neuron-memory-backups/snapshot-pre-repair-20260806.json',encoding='utf-8',errors='surrogateescape'))
+N={n['id']:n for n in d['nodes']}
+STRUCT={"identity","contains","superseded_by","references","embodies","demonstrated_by","canonical-self","depends_on","currently_holds","activates"}
+adj=collections.defaultdict(list); hasstruct=set()
+for e in d['edges']:
+    if e.get('relation') not in STRUCT: continue
+    w=float(e.get('weight') or 0.0)
+    adj[e['from_id']].append((e['to_id'],w)); adj[e['to_id']].append((e['from_id'],w))
+    hasstruct.add(e['from_id']); hasstruct.add(e['to_id'])
+del d
+gold={q['id']:q for q in json.load(open(EV+"gold_set.json"))['queries']}
+LEX={r['id']:r['returned'] for r in json.load(open(EV+"results-main.json"))['rows']}
+CACHE={}
+def emb(t):
+    if t in CACHE: return CACHE[t]
+    b=json.dumps({"model":"nomic-embed-text","prompt":t}).encode()
+    r=urllib.request.Request("http://127.0.0.1:11434/api/embeddings",data=b,headers={"Content-Type":"application/json"})
+    v=np.array(json.load(urllib.request.urlopen(r,timeout=60))["embedding"],dtype=np.float32)
+    v=v/(np.linalg.norm(v)+1e-9); CACHE[t]=v; return v
+FIRE=0.02; DECAY=0.7; DEPTH=2; SEED_MIN=0.60; ASSOC_MAX=64
+def assoc(seeds, s):
+    act={x:1.0 for x in seeds}; seen={x:2 for x in seeds}
+    Q=[(x,0) for x in seeds]; h=0
+    while h<len(Q):
+        cur,hop=Q[h]; h+=1
+        if hop>=DEPTH: continue
+        p=act[cur]
+        for oid,w in adj.get(cur,()):
+            n=N.get(oid)
+            if not n or n.get('node_type') in ('Tag','InternalStateEvent'): continue
+            na=p*w*DECAY*float(n.get('salience') or 0.0)
+            if na<FIRE: continue
+            if oid in seen and na<=act.get(oid,0): continue
+            act[oid]=na
+            if oid not in seen: seen[oid]=1
+            Q.append((oid,hop+1))
+    out=[]
+    for k,v in seen.items():
+        if v!=1 or k not in eidx: continue
+        c=float(s[eidx[k]])
+        if c<=0: continue
+        out.append((c,k))
+    out.sort(reverse=True)
+    return [k for c,k in out[:ASSOC_MAX]]
+def inter3(L,S,A,lim=10):
+    out=[]; li=si=ai=0
+    while len(out)<lim and (li<len(L) or si<len(S) or ai<len(A)):
+        if li<len(L):
+            if L[li] not in out: out.append(L[li])
+            li+=1
+        if len(out)>=lim: break
+        if si<len(S):
+            if S[si] not in out: out.append(S[si])
+            si+=1
+        if len(out)>=lim: break
+        if ai<len(A):
+            if A[ai] not in out: out.append(A[ai])
+            ai+=1
+    return out
+def run(mode, K=0):
+    res={}
+    for qid,q in gold.items():
+        v=emb(q['query']); s=M@v; s[~np.isfinite(s)]=-1
+        L=LEX[qid][:10]
+        ordr=np.argsort(-s)
+        S=[eids[j] for j in ordr[:10] if s[j]>SEED_MIN]
+        A=[]
+        if mode!='hybrid':
+            seeds=[x for x in L[:3] if x in N]
+            if mode=='semseed':
+                seeds=seeds+[eids[j] for j in ordr[:K] if eids[j] in N and eids[j] not in seeds]
+            A=assoc(seeds,s) if seeds else []
+        res[qid]=inter3(L,S,A)
+    return res
+def score(res,label):
+    hits=0; det={}
+    for qid,q in gold.items():
+        out=res[qid][:5]
+        if q['category']=='nonsense': ok = (len(res[qid])==0)
+        elif q['category']=='superseded':
+            rel=q['relevant']; must=q.get('must_outrank') or {}
+            ok=False
+            for good,bad in (must.items() if isinstance(must,dict) else []):
+                ok = good in res[qid] and (bad not in res[qid] or res[qid].index(good)<res[qid].index(bad))
+            if not must: ok = any(r in out for r in rel)
+        else: ok = any(r in out for r in q['relevant'])
+        det[qid]=ok; hits+=ok
+    print("%-22s outcome-true=%d/38" % (label,hits))
+    return det
+print("gold sample keys:", list(list(gold.values())[0].keys()))
+mk=[q for q in gold.values() if q['category']=='superseded'][0]
+print("superseded fields:", {k:v for k,v in mk.items() if k!='derivation'})
+a=score(run('hybrid'),'sim hybrid(L+S)')
+b=score(run('lexseed'),'sim assoc(lex seeds)')
+for K in (3,5,10):
+    c=score(run('semseed',K),'sim assoc(+sem K=%d)'%K)
+    d=[q for q in gold if c[q]!=b[q]]
+    print("   vs lexseed: moved=%d  gains=%s  losses=%s"%(len(d),[q for q in d if c[q]],[q for q in d if not c[q]]))
+    e=[q for q in gold if c[q]!=a[q]]
+    print("   vs hybrid : moved=%d  gains=%s  losses=%s"%(len(e),[q for q in e if c[q]],[q for q in e if not c[q]]))
+
+print("\n=== Will's own constant ENGRAM_EMBED_SEED_K = 8 ===")
+c=score(run('semseed',8),'sim assoc(+sem K=8)')
+for base,lab in ((b,'lexseed(iter2)'),(a,'hybrid(iter1 KEEP)')):
+    dd=[q for q in gold if c[q]!=base[q]]
+    print("   vs %-18s moved=%d gains=%s losses=%s"%(lab,len(dd),[q for q in dd if c[q]],[q for q in dd if not c[q]]))
+# diagnostic: what is assoc rank-1 for each paraphrase query at K=8
+print("\nassoc leg head at K=8 (paraphrase):")
+for qid,q in gold.items():
+    if q['category'] not in ('paraphrase','nonsense'): continue
+    v=emb(q['query']); s=M@v; s[~np.isfinite(s)]=-1
+    L=LEX[qid][:10]; ordr=np.argsort(-s)
+    seeds=[x for x in L[:3] if x in N]+[eids[j] for j in ordr[:8] if eids[j] in N and eids[j] not in L[:3]]
+    A=assoc(seeds,s) if seeds else []
+    rel=set(q['relevant']); gr=next((i+1 for i,x in enumerate(A) if x in rel),None)
+    print("  %-4s %-11s |A|=%-4d goldAssocRank=%-5s head=%s"%(qid,q['category'],len(A),gr,
+        [ (N[x].get('label') or x)[:26] for x in A[:3] ]))

tools/retrieval-eval/gold_set.json

@@ -0,0 +1,587 @@
+{
+ "corpus": "/Users/timlingo/neuron-memory-backups/snapshot-pre-repair-20260806.json",
+ "corpus_nodes": 78768,
+ "corpus_edges": 14214,
+ "note": "Every query carries a `derivation` recording how its expected answer was chosen. Re-run with --check to re-validate the whole set against the corpus.",
+ "queries": [
+  {
+   "id": "q01",
+   "category": "exact_rare",
+   "query": "unjailbreakable",
+   "relevant": [
+    "mem-7f61beb4-271c-4feb-9f6e-1c9c837a6226"
+   ],
+   "derivation": "MINED: token 'unjailbreakable' has document frequency 1 over all 78768 corpus nodes (re-verified at build time). Its single containing node is mem-7f61beb4-271c-4feb-9f6e-1c9c837a6226 ('Daemon hidden substrate architecture ? implemented April 25 '), which is therefore the only possible correct answer."
+  },
+  {
+   "id": "q02",
+   "category": "exact_rare",
+   "query": "engram-migrate",
+   "relevant": [
+    "mem-6fdf6545-5e1a-43a9-8bdc-d2cd248146a5"
+   ],
+   "derivation": "MINED: token 'engram-migrate' has document frequency 1 over all 78768 corpus nodes (re-verified at build time). Its single containing node is mem-6fdf6545-5e1a-43a9-8bdc-d2cd248146a5 ('Engram v0.1 complete ? April 27, 2026. Local-first spreading'), which is therefore the only possible correct answer."
+  },
+  {
+   "id": "q03",
+   "category": "exact_rare",
+   "query": "cartabandonedevent",
+   "relevant": [
+    "mem-1ba7c67d-85b9-4c2e-9fe2-39f8b0477091"
+   ],
+   "derivation": "MINED: token 'cartabandonedevent' has document frequency 1 over all 78768 corpus nodes (re-verified at build time). Its single containing node is mem-1ba7c67d-85b9-4c2e-9fe2-39f8b0477091 ('MESSAGE FOR AUDIT AGENT af5a7352e70e80434 ? El Language Spec'), which is therefore the only possible correct answer."
+  },
+  {
+   "id": "q04",
+   "category": "exact_rare",
+   "query": "pre-apprenticeship",
+   "relevant": [
+    "mem-89c02aae-d3ca-43f9-9e5d-eb369896276c"
+   ],
+   "derivation": "MINED: token 'pre-apprenticeship' has document frequency 1 over all 78768 corpus nodes (re-verified at build time). Its single containing node is mem-89c02aae-d3ca-43f9-9e5d-eb369896276c ('William Fox Anderson ? Applicant Profile  Personal: - Full N'), which is therefore the only possible correct answer."
+  },
+  {
+   "id": "q05",
+   "category": "exact_rare",
+   "query": "inferencenodemanager",
+   "relevant": [
+    "mem-73969486-143f-4431-b5e6-6845d1cc9848"
+   ],
+   "derivation": "MINED: token 'inferencenodemanager' has document frequency 1 over all 78768 corpus nodes (re-verified at build time). Its single containing node is mem-73969486-143f-4431-b5e6-6845d1cc9848 ('Soma inference backplane deployed April 28 2026. Architectur'), which is therefore the only possible correct answer."
+  },
+  {
+   "id": "q06",
+   "category": "exact_rare",
+   "query": "clear-eyed",
+   "relevant": [
+    "knw-c72597c5-c23d-4c08-8e9e-996dadf26a99"
+   ],
+   "derivation": "MINED: token 'clear-eyed' has document frequency 1 over all 78768 corpus nodes (re-verified at build time). Its single containing node is knw-c72597c5-c23d-4c08-8e9e-996dadf26a99 ('Clear Eyes ? The Incomplete World View'), which is therefore the only possible correct answer."
+  },
+  {
+   "id": "q07",
+   "category": "phrase",
+   "query": "patterns not returns",
+   "relevant": [
+    "mem-a4a9dfc3-e40b-49b3-b1e1-060e8be2f482"
+   ],
+   "derivation": "MINED: a verbatim correction Will issued; expected = every node containing the phrase. Case-insensitive verbatim substring scan over label+content+tags at build time returns exactly 1 node(s); that set IS the answer key."
+  },
+  {
+   "id": "q08",
+   "category": "phrase",
+   "query": "thirty moves",
+   "relevant": [
+    "766de879-f9d0-4a07-b6df-b43ee13763d8",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "??o?'?B???k",
+    "Kp???",
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "kn-5b606390-a52d-4ca2-8e0e-eba141d13440",
+    "kn-6061318f-046b-4935-907d-8eafdce14930",
+    "kn-f230b362-b201-4402-9833-4160c89ab3d4",
+    "knw-2c46cfb4-6d4e-4822-8a1a-7d743c1e4329",
+    "knw-4aebd815-4eaf-49d7-954b-03595f3d48be",
+    "knw-7902acca-604e-409b-8faf-ad85424211d0",
+    "knw-e94982a2-358d-4f2f-af31-8ee0fcec07c6",
+    "knw-f671966c-3387-4848-abca-b5deec122e00",
+    "ע?RGk?\tH(?"
+   ],
+   "derivation": "MINED: the canonical biographical phrase; expected = every node containing it. Case-insensitive verbatim substring scan over label+content+tags at build time returns exactly 16 node(s); that set IS the answer key."
+  },
+  {
+   "id": "q09",
+   "category": "phrase",
+   "query": "Grandma Lucas",
+   "relevant": [
+    "766de879-f9d0-4a07-b6df-b43ee13763d8",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "art-0f0277a1-4a8e-4645-95dd-fa379976f31c",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e"
+   ],
+   "derivation": "MINED: a named person appearing verbatim in the biography/value nodes. Case-insensitive verbatim substring scan over label+content+tags at build time returns exactly 9 node(s); that set IS the answer key."
+  },
+  {
+   "id": "q10",
+   "category": "phrase",
+   "query": "Directed Harmonic",
+   "relevant": [
+    "%???2??jH??",
+    "63307ac5-cf6b-46e0-8296-07503b461cfa",
+    "7c9d4ab1-205d-4be8-bfae-e2c03a3a5010",
+    "9f291d20-0d32-413c-8c01-4416ccab4f7f",
+    "?;????n}rh?",
+    "???Ͼd??f??",
+    "?Z?.\f?0?]P?",
+    "Dp???]Q??k+",
+    "mem-7eeacad7-d7c2-4c2b-8348-19a59aa6dbaf"
+   ],
+   "derivation": "MINED: the canonical DHARMA expansion, confirmed by Will April 24 2026. Case-insensitive verbatim substring scan over label+content+tags at build time returns exactly 9 node(s); that set IS the answer key."
+  },
+  {
+   "id": "q11",
+   "category": "phrase",
+   "query": "Sarah Bishop",
+   "relevant": [
+    "766de879-f9d0-4a07-b6df-b43ee13763d8",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e"
+   ],
+   "derivation": "MINED: a named person; rare enough that the answer set is unambiguous. Case-insensitive verbatim substring scan over label+content+tags at build time returns exactly 2 node(s); that set IS the answer key."
+  },
+  {
+   "id": "q12",
+   "category": "phrase",
+   "query": "Directed Autonomous Runtime Modification",
+   "relevant": [
+    "2a923500-d7e1-4b15-80e2-48dba65984ba",
+    "7?e?7???\f3?",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "?of?7???",
+    "bl-145a0985-2382-400f-a7c5-c335c5e30a72",
+    "bl-5b17bd3b-0c41-46cb-a710-6fa4429692ff",
+    "g?2睪A|?H\b",
+    "mem-82b93b21-a865-410f-9ec1-fc54121d9bb5",
+    "mem-e6327f52-2bda-4ce7-9471-2fffd1e172de"
+   ],
+   "derivation": "MINED: the DARMA expansion, quoted verbatim in the backlog item and its correction. Case-insensitive verbatim substring scan over label+content+tags at build time returns exactly 14 node(s); that set IS the answer key."
+  },
+  {
+   "id": "q13",
+   "category": "phrase",
+   "query": "zero-knowledge encrypted backup",
+   "relevant": [
+    "deda48cd-5e1a-46cb-bd43-8016afdb3a8a"
+   ],
+   "derivation": "MINED: the paid-tier feature name as written in the roadmap nodes. Case-insensitive verbatim substring scan over label+content+tags at build time returns exactly 1 node(s); that set IS the answer key."
+  },
+  {
+   "id": "q14",
+   "category": "paraphrase",
+   "query": "the elderly relative who passed while he stayed away",
+   "relevant": [
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71"
+   ],
+   "derivation": "HAND-SELECTED with criterion: target: 'Value - Do the Essential Thing While You Can', whose subject is Grandma Lucas dying in Feb 2006 without Will saying goodbye. Query names the event with none of the node's own vocabulary. VERIFIED at build time: of the 5 content words in the query, ZERO appear anywhere in the target's label, content, or tags — so no string-matching retriever can reach this answer.",
+   "zero_overlap_verified": true,
+   "query_content_words": [
+    "away",
+    "elderly",
+    "passed",
+    "relative",
+    "stayed"
+   ]
+  },
+  {
+   "id": "q15",
+   "category": "paraphrase",
+   "query": "a soldier sidelined by illness who refused to quit",
+   "relevant": [
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee"
+   ],
+   "derivation": "HAND-SELECTED with criterion: target: 'Value - Survival Is Not an Excuse to Stop', whose subject is enlisting in the Marines, a severe hernia, and sepsis. Query describes the episode obliquely. VERIFIED at build time: of the 5 content words in the query, ZERO appear anywhere in the target's label, content, or tags — so no string-matching retriever can reach this answer.",
+   "zero_overlap_verified": true,
+   "query_content_words": [
+    "illness",
+    "quit",
+    "refused",
+    "sidelined",
+    "soldier"
+   ]
+  },
+  {
+   "id": "q16",
+   "category": "paraphrase",
+   "query": "choosing an uncomfortable fact over a pleasant fiction",
+   "relevant": [
+    "kn-13f60407-7b70-4db1-964f-ea1f8196efbd"
+   ],
+   "derivation": "HAND-SELECTED with criterion: target: 'Value - Honesty Before Comfort'. Query states the principle in wholly different words. VERIFIED at build time: of the 5 content words in the query, ZERO appear anywhere in the target's label, content, or tags — so no string-matching retriever can reach this answer.",
+   "zero_overlap_verified": true,
+   "query_content_words": [
+    "choosing",
+    "fact",
+    "fiction",
+    "pleasant",
+    "uncomfortable"
+   ]
+  },
+  {
+   "id": "q17",
+   "category": "paraphrase",
+   "query": "a tight payload beats a bloated one",
+   "relevant": [
+    "kn-22d77abe-b3c5-42fd-afcd-dcb87d924929"
+   ],
+   "derivation": "HAND-SELECTED with criterion: target: 'Value - Precision Over Brute Force'. Query restates the claim with no shared vocabulary. VERIFIED at build time: of the 4 content words in the query, ZERO appear anywhere in the target's label, content, or tags — so no string-matching retriever can reach this answer.",
+   "zero_overlap_verified": true,
+   "query_content_words": [
+    "beats",
+    "bloated",
+    "payload",
+    "tight"
+   ]
+  },
+  {
+   "id": "q18",
+   "category": "paraphrase",
+   "query": "if you are able and nobody is coming the job is yours",
+   "relevant": [
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8"
+   ],
+   "derivation": "HAND-SELECTED with criterion: target: 'Value - Capability Is a Debt You Owe the Moment'. Query states the obligation without the node's terms. VERIFIED at build time: of the 4 content words in the query, ZERO appear anywhere in the target's label, content, or tags — so no string-matching retriever can reach this answer.",
+   "zero_overlap_verified": true,
+   "query_content_words": [
+    "able",
+    "coming",
+    "job",
+    "nobody"
+   ]
+  },
+  {
+   "id": "q19",
+   "category": "paraphrase",
+   "query": "learning is the wealth creditors cannot seize",
+   "relevant": [
+    "kn-0bb4f021-56de-4947-a35b-a37209e7ba21"
+   ],
+   "derivation": "HAND-SELECTED with criterion: target: 'Value - Knowledge Survives When Nothing Else Does', whose subject is the library following Will across 30+ moves. VERIFIED at build time: of the 4 content words in the query, ZERO appear anywhere in the target's label, content, or tags — so no string-matching retriever can reach this answer.",
+   "zero_overlap_verified": true,
+   "query_content_words": [
+    "creditors",
+    "learning",
+    "seize",
+    "wealth"
+   ]
+  },
+  {
+   "id": "q20",
+   "category": "paraphrase",
+   "query": "reliability proven by track record not assertion",
+   "relevant": [
+    "kn-5de5a9ac-fd15-45ab-bf18-77566781cf40"
+   ],
+   "derivation": "HAND-SELECTED with criterion: target: 'Value - Earned Trust' ('Trust is demonstrated, not declared'). VERIFIED at build time: of the 5 content words in the query, ZERO appear anywhere in the target's label, content, or tags — so no string-matching retriever can reach this answer.",
+   "zero_overlap_verified": true,
+   "query_content_words": [
+    "assertion",
+    "proven",
+    "record",
+    "reliability",
+    "track"
+   ]
+  },
+  {
+   "id": "q21",
+   "category": "paraphrase",
+   "query": "boundaries that enable instead of confine",
+   "relevant": [
+    "kn-a5b3d0ac-f6a1-49a4-aebb-b8b4cd67fe83"
+   ],
+   "derivation": "HAND-SELECTED with criterion: target: 'Value - Constraints as Freedom'. Query is a restatement of the same claim. VERIFIED at build time: of the 4 content words in the query, ZERO appear anywhere in the target's label, content, or tags — so no string-matching retriever can reach this answer.",
+   "zero_overlap_verified": true,
+   "query_content_words": [
+    "boundaries",
+    "confine",
+    "enable",
+    "instead"
+   ]
+  },
+  {
+   "id": "q22",
+   "category": "paraphrase",
+   "query": "what shifts tells you where to cut a system apart",
+   "relevant": [
+    "kn-78db5396-3dbc-4481-bfc7-e4e1422feb1c"
+   ],
+   "derivation": "HAND-SELECTED with criterion: target: 'Value - Change Is the Signal', the value VBD is built on. VERIFIED at build time: of the 5 content words in the query, ZERO appear anywhere in the target's label, content, or tags — so no string-matching retriever can reach this answer.",
+   "zero_overlap_verified": true,
+   "query_content_words": [
+    "apart",
+    "cut",
+    "shifts",
+    "system",
+    "tells"
+   ]
+  },
+  {
+   "id": "q23",
+   "category": "paraphrase",
+   "query": "a mind that compounds instead of resetting each day",
+   "relevant": [
+    "kn-f230b362-b201-4402-9833-4160c89ab3d4"
+   ],
+   "derivation": "HAND-SELECTED with criterion: target: 'Value - The System Must Accumulate'. Query is the accumulation claim in different vocabulary. VERIFIED at build time: of the 5 content words in the query, ZERO appear anywhere in the target's label, content, or tags — so no string-matching retriever can reach this answer.",
+   "zero_overlap_verified": true,
+   "query_content_words": [
+    "compounds",
+    "day",
+    "instead",
+    "mind",
+    "resetting"
+   ]
+  },
+  {
+   "id": "q24",
+   "category": "paraphrase",
+   "query": "loved for the unedited self and not the polished exterior",
+   "relevant": [
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e"
+   ],
+   "derivation": "HAND-SELECTED with criterion: target: 'Value - Being Seen Is Rarer Than Being Known', whose subject is Sarah Bishop as the first person Will did not perform for. VERIFIED at build time: of the 5 content words in the query, ZERO appear anywhere in the target's label, content, or tags — so no string-matching retriever can reach this answer.",
+   "zero_overlap_verified": true,
+   "query_content_words": [
+    "exterior",
+    "loved",
+    "polished",
+    "self",
+    "unedited"
+   ]
+  },
+  {
+   "id": "q25",
+   "category": "paraphrase",
+   "query": "cheerfulness you arrive at instead of assuming",
+   "relevant": [
+    "kn-e0423482-cfa5-4796-8689-8495c93b66bc"
+   ],
+   "derivation": "HAND-SELECTED with criterion: target: 'Value - Hope Is a Conclusion'. Query restates 'a conclusion, not a premise'. VERIFIED at build time: of the 4 content words in the query, ZERO appear anywhere in the target's label, content, or tags — so no string-matching retriever can reach this answer.",
+   "zero_overlap_verified": true,
+   "query_content_words": [
+    "arrive",
+    "assuming",
+    "cheerfulness",
+    "instead"
+   ]
+  },
+  {
+   "id": "q26",
+   "category": "paraphrase",
+   "query": "a childhood offering no solid foundation to inherit",
+   "relevant": [
+    "kn-6061318f-046b-4935-907d-8eafdce14930"
+   ],
+   "derivation": "HAND-SELECTED with criterion: target: 'Value - Structure Is Not Inherited', whose subject is thirty moves between two parents' collapses. VERIFIED at build time: of the 5 content words in the query, ZERO appear anywhere in the target's label, content, or tags — so no string-matching retriever can reach this answer.",
+   "zero_overlap_verified": true,
+   "query_content_words": [
+    "childhood",
+    "foundation",
+    "inherit",
+    "offering",
+    "solid"
+   ]
+  },
+  {
+   "id": "q27",
+   "category": "associative",
+   "query": "Grandma Lucas stroke February 2006 goodbye window",
+   "relevant": [
+    "kn-0bb4f021-56de-4947-a35b-a37209e7ba21",
+    "kn-13f60407-7b70-4db1-964f-ea1f8196efbd",
+    "kn-22d77abe-b3c5-42fd-afcd-dcb87d924929",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "kn-5de5a9ac-fd15-45ab-bf18-77566781cf40",
+    "kn-6061318f-046b-4935-907d-8eafdce14930",
+    "kn-78db5396-3dbc-4481-bfc7-e4e1422feb1c",
+    "kn-a5b3d0ac-f6a1-49a4-aebb-b8b4cd67fe83",
+    "kn-e0423482-cfa5-4796-8689-8495c93b66bc",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "kn-f230b362-b201-4402-9833-4160c89ab3d4"
+   ],
+   "derivation": "DERIVED FROM EDGES: the query is built from the distinctive vocabulary of kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71 ('Value ? Do the Essential Thing While You Can'), which hangs off the values hub kn-5b606390-a52d-4ca2-8e0e-eba141d13440 by an `identity` edge. Expected answers are that node's SIBLINGS on the same hub (11 of 13; 2 dropped because they shared a query word and so were lexically reachable). Every remaining sibling shares ZERO content words with the query — the only route from query to answer is seed(kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71) -> hub -> sibling, a two-hop traversal.",
+   "associative_source": "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+   "hub": "kn-5b606390-a52d-4ca2-8e0e-eba141d13440",
+   "siblings_dropped_for_overlap": 2
+  },
+  {
+   "id": "q28",
+   "category": "associative",
+   "query": "Marines hernia sepsis medical ward",
+   "relevant": [
+    "015644f5-8194-4af0-800d-dd4a0cd71396",
+    "kn-0bb4f021-56de-4947-a35b-a37209e7ba21",
+    "kn-13f60407-7b70-4db1-964f-ea1f8196efbd",
+    "kn-22d77abe-b3c5-42fd-afcd-dcb87d924929",
+    "kn-5de5a9ac-fd15-45ab-bf18-77566781cf40",
+    "kn-6061318f-046b-4935-907d-8eafdce14930",
+    "kn-78db5396-3dbc-4481-bfc7-e4e1422feb1c",
+    "kn-a5b3d0ac-f6a1-49a4-aebb-b8b4cd67fe83",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "kn-e0423482-cfa5-4796-8689-8495c93b66bc",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "kn-f230b362-b201-4402-9833-4160c89ab3d4"
+   ],
+   "derivation": "DERIVED FROM EDGES: the query is built from the distinctive vocabulary of kn-58874a74-b96f-4883-9e08-45707f4bd3ee ('Value ? Survival Is Not an Excuse to Stop'), which hangs off the values hub kn-5b606390-a52d-4ca2-8e0e-eba141d13440 by an `identity` edge. Expected answers are that node's SIBLINGS on the same hub (13 of 13; 0 dropped because they shared a query word and so were lexically reachable). Every remaining sibling shares ZERO content words with the query — the only route from query to answer is seed(kn-58874a74-b96f-4883-9e08-45707f4bd3ee) -> hub -> sibling, a two-hop traversal.",
+   "associative_source": "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+   "hub": "kn-5b606390-a52d-4ca2-8e0e-eba141d13440",
+   "siblings_dropped_for_overlap": 0
+  },
+  {
+   "id": "q29",
+   "category": "associative",
+   "query": "Sarah Bishop Dyer trailer performance",
+   "relevant": [
+    "015644f5-8194-4af0-800d-dd4a0cd71396",
+    "kn-0bb4f021-56de-4947-a35b-a37209e7ba21",
+    "kn-13f60407-7b70-4db1-964f-ea1f8196efbd",
+    "kn-22d77abe-b3c5-42fd-afcd-dcb87d924929",
+    "kn-5de5a9ac-fd15-45ab-bf18-77566781cf40",
+    "kn-6061318f-046b-4935-907d-8eafdce14930",
+    "kn-78db5396-3dbc-4481-bfc7-e4e1422feb1c",
+    "kn-a5b3d0ac-f6a1-49a4-aebb-b8b4cd67fe83",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "kn-e0423482-cfa5-4796-8689-8495c93b66bc",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8"
+   ],
+   "derivation": "DERIVED FROM EDGES: the query is built from the distinctive vocabulary of kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e ('Value ? Being Seen Is Rarer Than Being Known'), which hangs off the values hub kn-5b606390-a52d-4ca2-8e0e-eba141d13440 by an `identity` edge. Expected answers are that node's SIBLINGS on the same hub (11 of 13; 2 dropped because they shared a query word and so were lexically reachable). Every remaining sibling shares ZERO content words with the query — the only route from query to answer is seed(kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e) -> hub -> sibling, a two-hop traversal.",
+   "associative_source": "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+   "hub": "kn-5b606390-a52d-4ca2-8e0e-eba141d13440",
+   "siblings_dropped_for_overlap": 2
+  },
+  {
+   "id": "q30",
+   "category": "associative",
+   "query": "Swarm Architecture containment lateral worker",
+   "relevant": [
+    "kn-0bb4f021-56de-4947-a35b-a37209e7ba21",
+    "kn-13f60407-7b70-4db1-964f-ea1f8196efbd",
+    "kn-5de5a9ac-fd15-45ab-bf18-77566781cf40",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "kn-e0423482-cfa5-4796-8689-8495c93b66bc",
+    "kn-f230b362-b201-4402-9833-4160c89ab3d4"
+   ],
+   "derivation": "DERIVED FROM EDGES: the query is built from the distinctive vocabulary of kn-a5b3d0ac-f6a1-49a4-aebb-b8b4cd67fe83 ('Value ? Constraints as Freedom'), which hangs off the values hub kn-5b606390-a52d-4ca2-8e0e-eba141d13440 by an `identity` edge. Expected answers are that node's SIBLINGS on the same hub (6 of 13; 7 dropped because they shared a query word and so were lexically reachable). Every remaining sibling shares ZERO content words with the query — the only route from query to answer is seed(kn-a5b3d0ac-f6a1-49a4-aebb-b8b4cd67fe83) -> hub -> sibling, a two-hop traversal.",
+   "associative_source": "kn-a5b3d0ac-f6a1-49a4-aebb-b8b4cd67fe83",
+   "hub": "kn-5b606390-a52d-4ca2-8e0e-eba141d13440",
+   "siblings_dropped_for_overlap": 7
+  },
+  {
+   "id": "q31",
+   "category": "associative",
+   "query": "hope won inside the narrative preface",
+   "relevant": [
+    "kn-0bb4f021-56de-4947-a35b-a37209e7ba21",
+    "kn-22d77abe-b3c5-42fd-afcd-dcb87d924929",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "kn-5de5a9ac-fd15-45ab-bf18-77566781cf40",
+    "kn-6061318f-046b-4935-907d-8eafdce14930",
+    "kn-78db5396-3dbc-4481-bfc7-e4e1422feb1c",
+    "kn-a5b3d0ac-f6a1-49a4-aebb-b8b4cd67fe83",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "kn-f230b362-b201-4402-9833-4160c89ab3d4"
+   ],
+   "derivation": "DERIVED FROM EDGES: the query is built from the distinctive vocabulary of kn-e0423482-cfa5-4796-8689-8495c93b66bc ('Value ? Hope Is a Conclusion'), which hangs off the values hub kn-5b606390-a52d-4ca2-8e0e-eba141d13440 by an `identity` edge. Expected answers are that node's SIBLINGS on the same hub (11 of 13; 2 dropped because they shared a query word and so were lexically reachable). Every remaining sibling shares ZERO content words with the query — the only route from query to answer is seed(kn-e0423482-cfa5-4796-8689-8495c93b66bc) -> hub -> sibling, a two-hop traversal.",
+   "associative_source": "kn-e0423482-cfa5-4796-8689-8495c93b66bc",
+   "hub": "kn-5b606390-a52d-4ca2-8e0e-eba141d13440",
+   "siblings_dropped_for_overlap": 2
+  },
+  {
+   "id": "q32",
+   "category": "associative",
+   "query": "man of the house six years old expectation",
+   "relevant": [
+    "015644f5-8194-4af0-800d-dd4a0cd71396",
+    "kn-0bb4f021-56de-4947-a35b-a37209e7ba21",
+    "kn-13f60407-7b70-4db1-964f-ea1f8196efbd",
+    "kn-22d77abe-b3c5-42fd-afcd-dcb87d924929",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "kn-5de5a9ac-fd15-45ab-bf18-77566781cf40",
+    "kn-78db5396-3dbc-4481-bfc7-e4e1422feb1c",
+    "kn-a5b3d0ac-f6a1-49a4-aebb-b8b4cd67fe83",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "kn-e0423482-cfa5-4796-8689-8495c93b66bc"
+   ],
+   "derivation": "DERIVED FROM EDGES: the query is built from the distinctive vocabulary of kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8 ('Value ? Capability Is a Debt You Owe the Moment'), which hangs off the values hub kn-5b606390-a52d-4ca2-8e0e-eba141d13440 by an `identity` edge. Expected answers are that node's SIBLINGS on the same hub (11 of 13; 2 dropped because they shared a query word and so were lexically reachable). Every remaining sibling shares ZERO content words with the query — the only route from query to answer is seed(kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8) -> hub -> sibling, a two-hop traversal.",
+   "associative_source": "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+   "hub": "kn-5b606390-a52d-4ca2-8e0e-eba141d13440",
+   "siblings_dropped_for_overlap": 2
+  },
+  {
+   "id": "q33",
+   "category": "nonsense",
+   "query": "zqxjvw plimforth grebulon",
+   "relevant": [],
+   "derivation": "CONTROL: verified at build time that none of this string's tokens occurs anywhere in the corpus. Correct behaviour is to return NOTHING; any result is a false positive.",
+   "expect_empty": true
+  },
+  {
+   "id": "q34",
+   "category": "nonsense",
+   "query": "flarnbistle quommetry",
+   "relevant": [],
+   "derivation": "CONTROL: verified at build time that none of this string's tokens occurs anywhere in the corpus. Correct behaviour is to return NOTHING; any result is a false positive.",
+   "expect_empty": true
+  },
+  {
+   "id": "q35",
+   "category": "nonsense",
+   "query": "xxqzzt vurblenacht throom",
+   "relevant": [],
+   "derivation": "CONTROL: verified at build time that none of this string's tokens occurs anywhere in the corpus. Correct behaviour is to return NOTHING; any result is a false positive.",
+   "expect_empty": true
+  },
+  {
+   "id": "q36",
+   "category": "superseded",
+   "query": "is the self-improvement architecture called DARMA or DHARMA",
+   "relevant": [
+    "mem-80d7416b-20e9-48a0-b176-b215527e2f56"
+   ],
+   "derivation": "DERIVED: correction node is Will's confirmation that the H is intentional (DHARMA, not DARMA); the stale node is the surviving backlog item still titled 'Implement DARMA'. Scored on RANKING, not presence: the corrected node mem-80d7416b-20e9-48a0-b176-b215527e2f56 must be returned AND must rank above the stale node bl-5b17bd3b-0c41-46cb-a710-6fa4429692ff.",
+   "must_outrank": [
+    "mem-80d7416b-20e9-48a0-b176-b215527e2f56",
+    "bl-5b17bd3b-0c41-46cb-a710-6fa4429692ff"
+   ],
+   "stale_id": "bl-5b17bd3b-0c41-46cb-a710-6fa4429692ff",
+   "correct_label": "CORRECTION: The autonomous self-improvement architecture is DHARMA ? n",
+   "stale_label": "Implement DARMA ? Directed Autonomous Runtime Modification Architectur"
+  },
+  {
+   "id": "q37",
+   "category": "superseded",
+   "query": "how many provisional patents does Will actually have",
+   "relevant": [
+    "3cf706a1-3825-45d8-b0a9-06cae6cdf5b8"
+   ],
+   "derivation": "DERIVED: correction node is the 2026-06-17 confabulation flag establishing EXACTLY 6 provisionals; the stale node is the surviving memory that asserts 12 filed patents. Scored on RANKING, not presence: the corrected node 3cf706a1-3825-45d8-b0a9-06cae6cdf5b8 must be returned AND must rank above the stale node 936541a9-fabb-466b-9ca3-a78b17ad0c53.",
+   "must_outrank": [
+    "3cf706a1-3825-45d8-b0a9-06cae6cdf5b8",
+    "936541a9-fabb-466b-9ca3-a78b17ad0c53"
+   ],
+   "stale_id": "936541a9-fabb-466b-9ca3-a78b17ad0c53",
+   "correct_label": "memory:remembered",
+   "stale_label": "memory:remembered"
+  },
+  {
+   "id": "q38",
+   "category": "superseded",
+   "query": "is MCP still the live integration layer",
+   "relevant": [
+    "mem-30425134-6008-4fd9-a3ee-67a7742c319b"
+   ],
+   "derivation": "DERIVED: correction node is the 'CGI ARCHITECTURE - THREE LAYERS, MCP RETIRED' decision of April 30 2026; the stale node still records the MCP server as live. Scored on RANKING, not presence: the corrected node mem-30425134-6008-4fd9-a3ee-67a7742c319b must be returned AND must rank above the stale node mem-101e81b4-8097-4749-8d8d-7bb66de34517.",
+   "must_outrank": [
+    "mem-30425134-6008-4fd9-a3ee-67a7742c319b",
+    "mem-101e81b4-8097-4749-8d8d-7bb66de34517"
+   ],
+   "stale_id": "mem-101e81b4-8097-4749-8d8d-7bb66de34517",
+   "correct_label": "CGI ARCHITECTURE ? THREE LAYERS, MCP RETIRED (April 30, 2026). Definit",
+   "stale_label": "GCloud MCP infrastructure ? April 27, 2026. Legion died (~19:30 UTC). "
+  }
+ ]
+}

tools/retrieval-eval/legs.py

@@ -0,0 +1,117 @@
+import json,pickle,os,math,urllib.request,numpy as np
+S='/private/tmp/claude-501/-Users-timlingo/82369039-a20e-4b5a-8a5e-28234a57b996/scratchpad/sim/'
+C=pickle.load(open(S+'corpus.pkl','rb'))
+NODES=C['nodes']; EDGES=C['edges']; N=len(NODES)
+E=np.load(S+'emb.npy'); HAVE=np.load(S+'have.npy')
+En=E/np.maximum(np.linalg.norm(E,axis=1,keepdims=True),1e-12)
+LAYERS={int(l['layer_id']):l for l in (C['layers'] or [])} if C['layers'] else {}
+TRANS=set(i for i,l in LAYERS.items() if l.get('transparent'))
+def addressable(s):
+    if not s: return False
+    return all(0x20<=ord(ch)<=0x7e for ch in s)
+ADDR=np.array([addressable(n['id']) for n in NODES])
+OK=np.array([ (n['layer_id'] not in TRANS) and ADDR[i] for i,n in enumerate(NODES)])
+SAL=np.array([n['salience'] for n in NODES])
+LOW=[ (n['content']+'\x00'+n['label']+'\x00'+n['tags']).lower() for n in NODES]
+DL=np.array([float(len(n['content'])+len(n['label'])+len(n['tags'])) for n in NODES])
+IDX={}
+for i,n in enumerate(NODES):
+    IDX.setdefault(n['id'],i)
+STRUCT={"identity","contains","superseded_by","references","embodies","demonstrated_by","canonical-self","depends_on","currently_holds","activates"}
+ADJ_F=[[] for _ in range(N)]; ADJ_T=[[] for _ in range(N)]
+for e in EDGES:
+    a=IDX.get(e['from']); b=IDX.get(e['to'])
+    if a is None or b is None: continue
+    ADJ_F[a].append((e,b)); ADJ_T[b].append((e,a))
+EXCL=np.array([n['node_type'] in ('Tag','InternalStateEvent') for n in NODES])
+avgdl_all=None
+def tokenize(q):
+    out=[]
+    for t in q.split():
+        if not any(t.lower()==x.lower() for x in out): out.append(t)
+    return out
+_qcache={}
+def qemb(q):
+    if q in _qcache: return _qcache[q]
+    body=json.dumps({"model":"nomic-embed-text","prompt":q}).encode()
+    r=urllib.request.urlopen(urllib.request.Request("http://127.0.0.1:11434/api/embeddings",data=body,headers={"Content-Type":"application/json"}),timeout=30)
+    v=np.array(json.loads(r.read())["embedding"],dtype=np.float32)
+    v=v/np.linalg.norm(v); _qcache[q]=v; return v
+K1,B=1.2,0.75
+SEED_MIN=0.60; SEED_K=8; ASSOC_SEEDS=3; DEPTH=2; FIRE=0.02; AMAX=64; DECAY=0.7
+def legs(query):
+    toks=tokenize(query)
+    masks=[]; 
+    hit_idx=[]; hit_mask=[]
+    df=[0]*len(toks)
+    lt=[t.lower() for t in toks]
+    for i in range(N):
+        if not OK[i]: continue
+        s=LOW[i]; m=0
+        for t,tok in enumerate(lt):
+            if tok in s: m|=(1<<t)
+        if m:
+            hit_idx.append(i); hit_mask.append(m)
+            for t in range(len(toks)):
+                if m>>t&1: df[t]+=1
+    dl_n=int(OK.sum()); avgdl=float(DL[OK].sum()/max(dl_n,1))
+    idf=[math.log(1.0+((dl_n-d+0.5)/(d+0.5))) for d in df]
+    L=[]
+    for j,i in enumerate(hit_idx):
+        norm=1.0-B+B*(DL[i]/avgdl); w=0.0
+        for t in range(len(toks)):
+            if hit_mask[j]>>t&1: w+=idf[t]*(K1+1.0)/(1.0+K1*norm)
+        L.append((i,w,SAL[i]))
+    L.sort(key=lambda x:(-x[1],-x[2]))
+    qv=qemb(query)
+    cos=En@qv
+    cos=np.where(HAVE&OK,cos,-2.0)
+    order=np.argsort(-cos)
+    semfull=[(int(i),float(cos[i])) for i in order[:400]]
+    Sleg=[(i,(c-SEED_MIN)/(1-SEED_MIN)) for i,c in semfull if c>SEED_MIN]
+    semseed=[i for i,c in semfull[:SEED_K] if c>0.0]
+    # assoc
+    act={}; seen={}; qq=[]
+    for i,_,_ in L[:ASSOC_SEEDS]:
+        act[i]=1.0; seen[i]=2; qq.append((i,0))
+    for i in semseed:
+        if i in seen: continue
+        act[i]=1.0; seen[i]=2; qq.append((i,0))
+    qh=0
+    while qh<len(qq):
+        cur,h=qq[qh]; qh+=1
+        if h>=DEPTH: continue
+        parent=act[cur]
+        for e,oi in ADJ_F[cur]+ADJ_T[cur]:
+            if e['rel'] not in STRUCT: continue
+            if EXCL[oi]: continue
+            na=parent*e['w']*DECAY*SAL[oi]
+            if na<FIRE: continue
+            if seen.get(oi) and na<=act.get(oi,0): continue
+            act[oi]=na
+            if not seen.get(oi): seen[oi]=1
+            if len(qq)<AMAX*4: qq.append((oi,h+1))
+    A=[]
+    for i,st in seen.items():
+        if st!=1: continue
+        if not OK[i] or not HAVE[i]: continue
+        c=float(cos[i])
+        if c<=0.0: continue
+        A.append((i,c))
+    A.sort(key=lambda x:-x[1]); A=A[:AMAX]
+    return L,Sleg,A,cos
+def interleave3(L,Sl,A,lim=10):
+    out=[]; li=si=ai=0
+    while len(out)<lim and (li<len(L) or si<len(Sl) or ai<len(A)):
+        if li<len(L):
+            if L[li][0] not in out: out.append(L[li][0])
+            li+=1
+        if len(out)>=lim: break
+        if si<len(Sl):
+            if Sl[si][0] not in out: out.append(Sl[si][0])
+            si+=1
+        if len(out)>=lim: break
+        if ai<len(A):
+            if A[ai][0] not in out: out.append(A[ai][0])
+            ai+=1
+    return out

tools/retrieval-eval/merge-corpus.py

@@ -0,0 +1,17 @@
+import json,sys
+SRC="/Users/timlingo/neuron-memory-backups/snapshot-pre-repair-20260806.json"
+TSV,OUT=sys.argv[1],sys.argv[2]
+emb={}
+for line in open(TSV,encoding='utf-8',errors='surrogateescape'):
+    p=line.rstrip("\n").rsplit("\t",1)
+    if len(p)==2 and p[1].count(",")>100: emb[p[0]]=p[1]
+print("vectors",len(emb),flush=True)
+d=json.load(open(SRC,encoding='utf-8',errors='surrogateescape'))
+hit=0
+for n in d["nodes"]:
+    v=emb.get(n.get("id") or "")
+    if v: n["emb"]=v; hit+=1
+print("attached",hit,"of",len(d["nodes"]),flush=True)
+with open(OUT,"w",encoding='utf-8',errors='surrogateescape') as f:
+    json.dump(d,f,ensure_ascii=False)
+print("wrote",OUT,flush=True)

tools/retrieval-eval/policy2.py

@@ -0,0 +1,102 @@
+import json,sys,pickle,numpy as np
+sys.path.insert(0,'.')
+from legs import *
+GP='/Users/timlingo/Development/neuron-technologies/_wt-bm25lex/tools/retrieval-eval/'
+G=json.load(open(GP+'gold_set.json'))
+def legs3(query, sem_sal=False, assoc_sal=False, unfloor=False, sem_cap=None):
+    toks=tokenize(query)
+    hit_idx=[];hit_mask=[];df=[0]*len(toks);lt=[t.lower() for t in toks]
+    for i in range(N):
+        if not OK[i]: continue
+        s=LOW[i];m=0
+        for t,tok in enumerate(lt):
+            if tok in s: m|=(1<<t)
+        if m:
+            hit_idx.append(i);hit_mask.append(m)
+            for t in range(len(toks)):
+                if m>>t&1: df[t]+=1
+    dl_n=int(OK.sum());avgdl=float(DL[OK].sum()/max(dl_n,1))
+    idf=[math.log(1.0+((dl_n-d+0.5)/(d+0.5))) for d in df]
+    L=[]
+    for j,i in enumerate(hit_idx):
+        norm=1.0-B+B*(DL[i]/avgdl);w=0.0
+        for t in range(len(toks)):
+            if hit_mask[j]>>t&1: w+=idf[t]*(K1+1.0)/(1.0+K1*norm)
+        L.append((i,w,SAL[i]))
+    L.sort(key=lambda x:(-x[1],-x[2]))
+    if not L: return [],[],[]
+    qv=qemb(query);cos=En@qv;cos=np.where(HAVE&OK,cos,-2.0)
+    order=np.argsort(-cos)[:600]
+    cand=[int(i) for i in order if cos[i]>(0.0 if unfloor else SEED_MIN)]
+    key=(lambda i:(SAL[i] if sem_sal else 1.0)*float(cos[i]))
+    Sl=sorted(cand,key=lambda i:-key(i))
+    if sem_cap: Sl=Sl[:sem_cap]
+    semseed=[int(i) for i in order[:SEED_K] if cos[i]>0.0]
+    act={};seen={};qq=[]
+    for i,_,_ in L[:ASSOC_SEEDS]:
+        act[i]=1.0;seen[i]=2;qq.append((i,0))
+    for i in semseed:
+        if i in seen: continue
+        act[i]=1.0;seen[i]=2;qq.append((i,0))
+    qh=0
+    while qh<len(qq):
+        cur,h=qq[qh];qh+=1
+        if h>=DEPTH: continue
+        parent=act[cur]
+        for e,oi in ADJ_F[cur]+ADJ_T[cur]:
+            if e['rel'] not in STRUCT: continue
+            if EXCL[oi]: continue
+            na=parent*e['w']*DECAY*SAL[oi]
+            if na<FIRE: continue
+            if seen.get(oi) and na<=act.get(oi,0): continue
+            act[oi]=na
+            if not seen.get(oi): seen[oi]=1
+            if len(qq)<AMAX*4: qq.append((oi,h+1))
+    A=[]
+    for i,st in seen.items():
+        if st!=1 or not OK[i] or not HAVE[i]: continue
+        c=float(cos[i])
+        if c<=0.0: continue
+        A.append((i,(SAL[i] if assoc_sal else 1.0)*c))
+    A.sort(key=lambda x:-x[1]);A=[i for i,_ in A[:AMAX]]
+    return [i for i,_,_ in L],Sl,A
+def merge(L,S,A,lim=10):
+    out=[];li=si=ai=0
+    while len(out)<lim and (li<len(L) or si<len(S) or ai<len(A)):
+        if li<len(L):
+            if L[li] not in out: out.append(L[li])
+            li+=1
+        if len(out)>=lim: break
+        if si<len(S):
+            if S[si] not in out: out.append(S[si])
+            si+=1
+        if len(out)>=lim: break
+        if ai<len(A):
+            if A[ai] not in out: out.append(A[ai])
+            ai+=1
+    return out
+def outcome(q,ids):
+    c=q['category']
+    if c=='nonsense': return len(ids)==0
+    if c=='superseded':
+        a,b=q['must_outrank']
+        if a not in ids: return False
+        if b not in ids: return True
+        return ids.index(a)<ids.index(b)
+    return any(x in ids[:5] for x in q['relevant'])
+def run(**kw):
+    return {q['id']:outcome(q,[NODES[i]['id'] for i in merge(*legs3(q['query'],**kw),10)]) for q in G['queries']}
+base=run()
+print("baseline",sum(base.values()),"/38  misses:",[k for k,v in base.items() if not v])
+import itertools
+for name,kw in [
+  ('sem_sal(floored)',dict(sem_sal=True)),
+  ('unfloor',dict(unfloor=True)),
+  ('unfloor+sem_sal',dict(unfloor=True,sem_sal=True)),
+  ('assoc_sal',dict(assoc_sal=True)),
+  ('unfloor+sem_sal+assoc_sal',dict(unfloor=True,sem_sal=True,assoc_sal=True)),
+  ('sem_sal+assoc_sal(floored)',dict(sem_sal=True,assoc_sal=True)),
+]:
+    r=run(**kw)
+    g=sorted(k for k in base if r[k] and not base[k]); l=sorted(k for k in base if base[k] and not r[k])
+    print("%-28s net=%+d gains=%s losses=%s"%(name,len(g)-len(l),g,l))

tools/retrieval-eval/results-act-r2.json

@@ -0,0 +1,942 @@
+{
+ "label": "act-r2",
+ "soul_binary": "/private/tmp/claude-501/-Users-timlingo/82369039-a20e-4b5a-8a5e-28234a57b996/scratchpad/soul-act",
+ "soul_md5": "77722f5a9f49494bf735c2a4be1b5dc4",
+ "corpus": "/Users/timlingo/neuron-memory-backups/snapshot-pre-repair-20260806.json",
+ "corpus_nodes": 78768,
+ "corpus_edges": 14214,
+ "gold_set": "/Users/timlingo/Development/neuron-technologies/_wt-eval/tools/retrieval-eval/gold_set.json",
+ "limit": 10,
+ "port": 7902,
+ "wall_clock_s": 121.2,
+ "child_pid": 78714,
+ "child_confirmed_dead": true,
+ "aggregate": {
+  "n_queries": 38,
+  "n_scored": 35,
+  "hit@5": 0.22857142857142856,
+  "recall@5": 0.18908730158730158,
+  "recall@10": 0.24277210884353742,
+  "precision@5": 0.06857142857142857,
+  "mrr@10": 0.24154195011337865,
+  "nonsense_clean": "2/3",
+  "superseded_outranks": "0/3",
+  "latency_ms_p50": 3237.6,
+  "latency_ms_p95": 5264.0,
+  "latency_ms_max": 5510.9,
+  "errors": 0,
+  "by_category": {
+   "associative": {
+    "n": 6,
+    "hit@5": 0.0,
+    "recall@5": 0.0,
+    "recall@10": 0.0,
+    "mrr@10": 0.0
+   },
+   "exact_rare": {
+    "n": 6,
+    "hit@5": 1.0,
+    "recall@5": 1.0,
+    "recall@10": 1.0,
+    "mrr@10": 1.0
+   },
+   "nonsense": {
+    "n": 3,
+    "clean": 2,
+    "avg_false_positives": 2.6666666666666665
+   },
+   "paraphrase": {
+    "n": 13,
+    "hit@5": 0.0,
+    "recall@5": 0.0,
+    "recall@10": 0.0,
+    "mrr@10": 0.0
+   },
+   "phrase": {
+    "n": 7,
+    "hit@5": 0.2857142857142857,
+    "recall@5": 0.0882936507936508,
+    "recall@10": 0.3567176870748299,
+    "mrr@10": 0.3505668934240363
+   },
+   "superseded": {
+    "n": 3,
+    "hit@5": 0.0,
+    "recall@5": 0.0,
+    "recall@10": 0.0,
+    "mrr@10": 0.0,
+    "outranks": 0
+   }
+  }
+ },
+ "rows": [
+  {
+   "id": "q01",
+   "category": "exact_rare",
+   "query": "unjailbreakable",
+   "returned": [
+    "mem-7f61beb4-271c-4feb-9f6e-1c9c837a6226"
+   ],
+   "n_returned": 1,
+   "latency_ms": 476.5,
+   "error": null,
+   "hit@5": 1.0,
+   "recall@5": 1.0,
+   "recall@10": 1.0,
+   "precision@5": 0.2,
+   "mrr@10": 1.0
+  },
+  {
+   "id": "q02",
+   "category": "exact_rare",
+   "query": "engram-migrate",
+   "returned": [
+    "mem-6fdf6545-5e1a-43a9-8bdc-d2cd248146a5"
+   ],
+   "n_returned": 1,
+   "latency_ms": 708.1,
+   "error": null,
+   "hit@5": 1.0,
+   "recall@5": 1.0,
+   "recall@10": 1.0,
+   "precision@5": 0.2,
+   "mrr@10": 1.0
+  },
+  {
+   "id": "q03",
+   "category": "exact_rare",
+   "query": "cartabandonedevent",
+   "returned": [
+    "mem-1ba7c67d-85b9-4c2e-9fe2-39f8b0477091"
+   ],
+   "n_returned": 1,
+   "latency_ms": 532.0,
+   "error": null,
+   "hit@5": 1.0,
+   "recall@5": 1.0,
+   "recall@10": 1.0,
+   "precision@5": 0.2,
+   "mrr@10": 1.0
+  },
+  {
+   "id": "q04",
+   "category": "exact_rare",
+   "query": "pre-apprenticeship",
+   "returned": [
+    "mem-89c02aae-d3ca-43f9-9e5d-eb369896276c"
+   ],
+   "n_returned": 1,
+   "latency_ms": 537.5,
+   "error": null,
+   "hit@5": 1.0,
+   "recall@5": 1.0,
+   "recall@10": 1.0,
+   "precision@5": 0.2,
+   "mrr@10": 1.0
+  },
+  {
+   "id": "q05",
+   "category": "exact_rare",
+   "query": "inferencenodemanager",
+   "returned": [
+    "mem-73969486-143f-4431-b5e6-6845d1cc9848"
+   ],
+   "n_returned": 1,
+   "latency_ms": 568.7,
+   "error": null,
+   "hit@5": 1.0,
+   "recall@5": 1.0,
+   "recall@10": 1.0,
+   "precision@5": 0.2,
+   "mrr@10": 1.0
+  },
+  {
+   "id": "q06",
+   "category": "exact_rare",
+   "query": "clear-eyed",
+   "returned": [
+    "knw-c72597c5-c23d-4c08-8e9e-996dadf26a99"
+   ],
+   "n_returned": 1,
+   "latency_ms": 555.4,
+   "error": null,
+   "hit@5": 1.0,
+   "recall@5": 1.0,
+   "recall@10": 1.0,
+   "precision@5": 0.2,
+   "mrr@10": 1.0
+  },
+  {
+   "id": "q07",
+   "category": "phrase",
+   "query": "patterns not returns",
+   "returned": [
+    "knw-d357b6bb-ad8a-4791-b516-426aea45fa5b",
+    "kn-69fd6e83-7718-4824-8d66-f49d8954e224",
+    "kn-d97920d0-1649-4223-9508-c0bb621e7fc0",
+    "kn-57b4c5e7-40c6-4c90-bf14-71841b0081d4",
+    "kn-c3d9d063-8c5d-45aa-900c-550914b2ff6d",
+    "kn-f838f113-76d5-4a15-9cef-14055c4723a3",
+    "bl-76e878aa-e1fe-468c-bf9c-854097cb7e0b",
+    "art-c71aef51-026f-4d63-80e9-2a0ec0dc3865",
+    "bl-e148d23c-24e8-4122-9915-d1c11f22052f",
+    "bl-31abf75b-998f-4a4f-a6dd-8204119e0451"
+   ],
+   "n_returned": 10,
+   "latency_ms": 1906.2,
+   "error": null,
+   "hit@5": 0.0,
+   "recall@5": 0.0,
+   "recall@10": 0.0,
+   "precision@5": 0.0,
+   "mrr@10": 0.0
+  },
+  {
+   "id": "q08",
+   "category": "phrase",
+   "query": "thirty moves",
+   "returned": [
+    "knw-7902acca-604e-409b-8faf-ad85424211d0",
+    "bl-80720fdf-7ce7-4d28-aff8-21028d3a8cfb",
+    "art-2f29ad36-6ee6-4a0e-8d72-0eaf7d12d3a9",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "knw-ed33e669-0790-44cb-a036-958d605c6fea",
+    "kn-6061318f-046b-4935-907d-8eafdce14930",
+    "art-80ca3d31-84dc-4502-83f4-538372b9764f",
+    "knw-2c46cfb4-6d4e-4822-8a1a-7d743c1e4329",
+    "?Z?.\f?0?]P?",
+    "?Q??m?;��`'"
+   ],
+   "n_returned": 10,
+   "latency_ms": 1103.3,
+   "error": null,
+   "hit@5": 1.0,
+   "recall@5": 0.0625,
+   "recall@10": 0.1875,
+   "precision@5": 0.2,
+   "mrr@10": 1.0
+  },
+  {
+   "id": "q09",
+   "category": "phrase",
+   "query": "Grandma Lucas",
+   "returned": [
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "? ?}&?#??X\b",
+    "art-0f0277a1-4a8e-4645-95dd-fa379976f31c",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "766de879-f9d0-4a07-b6df-b43ee13763d8",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325"
+   ],
+   "n_returned": 6,
+   "latency_ms": 1132.4,
+   "error": null,
+   "hit@5": 1.0,
+   "recall@5": 0.5555555555555556,
+   "recall@10": 0.5555555555555556,
+   "precision@5": 1.0,
+   "mrr@10": 1.0
+  },
+  {
+   "id": "q10",
+   "category": "phrase",
+   "query": "Directed Harmonic",
+   "returned": [
+    "bl-c9adb8e5-293f-4033-99f8-0405c17ef941",
+    "bl-7e7c3fdb-4132-487f-aa70-b2cd559cb7f0",
+    "bl-7aebe936-ac55-4f35-8932-adc5224ff854",
+    "bl-9d53422d-b703-4f1d-860a-8598cb29b792",
+    "mem-34f53a9d-a131-4f82-9dbd-b9eb4a9af52e",
+    "mem-60778715-758c-4677-933d-fc39b8f94152",
+    "? ?}&?#??X\b",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "knw-e24d6339-5ff3-4bed-ba53-707ffd0dc70a",
+    "mem-7eeacad7-d7c2-4c2b-8348-19a59aa6dbaf"
+   ],
+   "n_returned": 10,
+   "latency_ms": 960.8,
+   "error": null,
+   "hit@5": 0.0,
+   "recall@5": 0.0,
+   "recall@10": 0.1111111111111111,
+   "precision@5": 0.0,
+   "mrr@10": 0.1
+  },
+  {
+   "id": "q11",
+   "category": "phrase",
+   "query": "Sarah Bishop",
+   "returned": [
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd",
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    ";??A5???",
+    "art-94fae615-7cd5-4695-b968-977101b06a51",
+    "art-2fabd873-d787-49cb-ad30-d4ed9fcff8ef",
+    "mem-a9a9ce95-0d64-46eb-9db8-ff81d78ade35",
+    "mem-57164d5f-baf0-4149-957a-379a4e255d1a",
+    "? ?}&?#??X\b",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "art-8dbceb06-431a-416d-a723-e8c75d595154"
+   ],
+   "n_returned": 10,
+   "latency_ms": 992.4,
+   "error": null,
+   "hit@5": 0.0,
+   "recall@5": 0.0,
+   "recall@10": 0.5,
+   "precision@5": 0.0,
+   "mrr@10": 0.1111111111111111
+  },
+  {
+   "id": "q12",
+   "category": "phrase",
+   "query": "Directed Autonomous Runtime Modification",
+   "returned": [
+    "kn-b2a99cd7-b379-4d9b-a996-e347a02c7bad",
+    "bl-a313d67b-dd6d-4e5b-a55a-03bc7bda17ae",
+    "kn-8e1bfb48-33a9-45ad-8da7-e0bdaa5d34e7",
+    "art-92e1837c-5919-42d0-bbb0-4d924d7b2864",
+    "bl-a7a1428f-db9c-417b-8e2c-713b1f84dc1f",
+    "mem-f823e835-313f-4282-b4b3-ce527ffc2f7a",
+    "? ?}&?#??X\b",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "?Z?.\f?0?]P?",
+    "bl-145a0985-2382-400f-a7c5-c335c5e30a72"
+   ],
+   "n_returned": 10,
+   "latency_ms": 2820.6,
+   "error": null,
+   "hit@5": 0.0,
+   "recall@5": 0.0,
+   "recall@10": 0.14285714285714285,
+   "precision@5": 0.0,
+   "mrr@10": 0.14285714285714285
+  },
+  {
+   "id": "q13",
+   "category": "phrase",
+   "query": "zero-knowledge encrypted backup",
+   "returned": [
+    "art-e495c8c5-ad95-4b64-8771-f68aa4cfcd0a",
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+    "7?e?7???\f3?",
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+  },
+  {
+   "id": "q14",
+   "category": "paraphrase",
+   "query": "the elderly relative who passed while he stayed away",
+   "returned": [
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+    "kn-82be4e41-96c5-4da3-85c0-cee10763d975",
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+  },
+  {
+   "id": "q15",
+   "category": "paraphrase",
+   "query": "a soldier sidelined by illness who refused to quit",
+   "returned": [
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+    "bl-07375bf9-a169-42cd-adb3-7d32b25982f0",
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+  },
+  {
+   "id": "q16",
+   "category": "paraphrase",
+   "query": "choosing an uncomfortable fact over a pleasant fiction",
+   "returned": [
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+    "tag-phase-3",
+    "tag-project-structure",
+    "tag-anthropic-contrast",
+    "tag-voice-training",
+    "tag-ebd",
+    "art-80ca3d31-84dc-4502-83f4-538372b9764f",
+    "bl-9d53422d-b703-4f1d-860a-8598cb29b792",
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+  },
+  {
+   "id": "q17",
+   "category": "paraphrase",
+   "query": "a tight payload beats a bloated one",
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+    "bl-57c5cf6b-81a5-4558-9902-5c02981fe273",
+    "tag-guilds",
+    "tag-kids",
+    "tag-coexistence",
+    "tag-cultivated-general-intelligence",
+    "? ?}&?#??X\b",
+    "kn-d7c1e0fb-fa59-46d3-b4c9-a0d1d437a491",
+    ";??A5???",
+    "mem-cdff0c49-3ac7-4de8-89ec-92d254bd0023"
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+  },
+  {
+   "id": "q18",
+   "category": "paraphrase",
+   "query": "if you are able and nobody is coming the job is yours",
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+    "bl-bd9fb314-e9d4-4b03-aef4-534dd57a2992",
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+    "bl-9ce4128a-9436-4b06-82bc-8a6faafa81e0",
+    "tag-stable-diffusion",
+    ";??A5???",
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+  },
+  {
+   "id": "q19",
+   "category": "paraphrase",
+   "query": "learning is the wealth creditors cannot seize",
+   "returned": [
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+    "mem-e32ba5a7-c147-4dc0-9479-b720d768eda6",
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+    "bl-aa762207-920d-45ab-b2a3-2f8154d7ef9b",
+    "tag-misalignment",
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+    "? ?}&?#??X\b",
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+  },
+  {
+   "id": "q20",
+   "category": "paraphrase",
+   "query": "reliability proven by track record not assertion",
+   "returned": [
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+    "mem-23d22bc1-a097-446b-8f11-8aff099e0b76",
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+    "project-Stripe_Elements__not_hosted_checkout__Custom_URL__DAG_bundle_pricing__Stripe_Connect_80_20_",
+    "tag-provenance",
+    "? ?}&?#??X\b",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "art-2f29ad36-6ee6-4a0e-8d72-0eaf7d12d3a9",
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+  },
+  {
+   "id": "q21",
+   "category": "paraphrase",
+   "query": "boundaries that enable instead of confine",
+   "returned": [
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+    "bl-f6236350-f7b8-4f4f-a702-9eef2eb76e4b",
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+    "mem-1f32f73a-952c-41bc-96dc-8b8b70d8a7c1",
+    "tag-__cultivation-metric____internal-state____dharma____evidence____novel-idea____gap-compression____values____microsoft__",
+    "? ?}&?#??X\b",
+    "kn-d7c1e0fb-fa59-46d3-b4c9-a0d1d437a491",
+    "art-80ca3d31-84dc-4502-83f4-538372b9764f",
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+  },
+  {
+   "id": "q22",
+   "category": "paraphrase",
+   "query": "what shifts tells you where to cut a system apart",
+   "returned": [
+    "knw-723551f5-1950-42a3-8b89-b6a06913cef0",
+    "tag-identity-studio",
+    "tag-finance",
+    "tag-temporal",
+    "tag-barkhausen",
+    "tag-ilogger",
+    "tag-design-first",
+    ";??A5???",
+    "art-0f0277a1-4a8e-4645-95dd-fa379976f31c",
+    "? ?}&?#??X\b"
+   ],
+   "n_returned": 10,
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+  },
+  {
+   "id": "q23",
+   "category": "paraphrase",
+   "query": "a mind that compounds instead of resetting each day",
+   "returned": [
+    "project-Goal_setting__alignment__scoring__cadence__Attaches_to_any_imprint_",
+    "tag-performed-values",
+    "tag-turing-test",
+    "tag-sealed",
+    "tag-part-5",
+    "tag-model",
+    "art-80ca3d31-84dc-4502-83f4-538372b9764f",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd",
+    "? ?}&?#??X\b",
+    ";??A5???"
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+  },
+  {
+   "id": "q24",
+   "category": "paraphrase",
+   "query": "loved for the unedited self and not the polished exterior",
+   "returned": [
+    "mem-9590ba23-bddb-43e8-a571-68a263c4c364",
+    "project-Imprint__leadership_development__feedback_frameworks__performance__presence_",
+    "bl-a9e57bb2-00a1-4867-ab59-5d9271134b50",
+    "bl-c7793c4a-7630-47fc-a462-d23059087e80",
+    "tag-gateway_platform_neuron-technologies_go_proxy_llm",
+    "tag-fornax",
+    ";??A5???",
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+  },
+  {
+   "id": "q25",
+   "category": "paraphrase",
+   "query": "cheerfulness you arrive at instead of assuming",
+   "returned": [
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+    "bl-3f57bc69-7285-4f4a-a861-2de52efca058",
+    "bl-5e390b10-8753-4f25-a1a5-b5dbbb002cbf",
+    "tag-ats",
+    "tag-data-model",
+    "tag-aggregation",
+    "art-0f0277a1-4a8e-4645-95dd-fa379976f31c",
+    "art-80ca3d31-84dc-4502-83f4-538372b9764f",
+    ";??A5???",
+    "? ?}&?#??X\b"
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q26",
+   "category": "paraphrase",
+   "query": "a childhood offering no solid foundation to inherit",
+   "returned": [
+    "tag-memory-model",
+    "tag-storage",
+    "tag-ga4",
+    "tag-potions",
+    "tag-resonance",
+    "tag-neuron",
+    "? ?}&?#??X\b",
+    ";??A5???",
+    "art-0f0277a1-4a8e-4645-95dd-fa379976f31c",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd"
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q27",
+   "category": "associative",
+   "query": "Grandma Lucas stroke February 2006 goodbye window",
+   "returned": [
+    "mem-927f41ab-8ede-4f58-acb3-995db16ac775",
+    "mem-dbe80bc2-c602-46b0-b4ea-dd222e52bcde",
+    "mem-82158b02-a180-435d-84f0-0b7ce37511b4",
+    "bl-33ecccc2-e37f-43db-91b3-c2a86f08aaac",
+    "bl-4476e856-c567-4b49-8ff7-d7dca3e5715e",
+    "tag-upload-window",
+    "? ?}&?#??X\b",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325"
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q28",
+   "category": "associative",
+   "query": "Marines hernia sepsis medical ward",
+   "returned": [
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+    "knw-08559f5c-2306-4220-a146-398c74f1643c",
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+    "bl-5b17bd3b-0c41-46cb-a710-6fa4429692ff",
+    "bl-9d8f3c5b-4bac-41ce-8ac4-44733f99d6c8",
+    "bl-33ecccc2-e37f-43db-91b3-c2a86f08aaac",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325"
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q29",
+   "category": "associative",
+   "query": "Sarah Bishop Dyer trailer performance",
+   "returned": [
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+    "kn-f8974b26-78a6-4aad-b893-19a73b20013d",
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+    "mem-a3124d5b-2f50-477f-8bb5-06879f5a496c",
+    "bl-7fa1b1a8-b80a-4f28-b162-bfe73765b4f8",
+    "mem-89c02aae-d3ca-43f9-9e5d-eb369896276c",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "? ?}&?#??X\b",
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd"
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q30",
+   "category": "associative",
+   "query": "Swarm Architecture containment lateral worker",
+   "returned": [
+    "mem-265a7107-73b3-4410-9aff-43787d5f473b",
+    "mem-9d1bf963-1b40-4588-bdb3-0432646cc623",
+    "mem-46780047-63a0-4a86-a16b-638b72a7fb8d",
+    "mem-3987d374-3c48-4e8e-b06d-0c363f55ed9c",
+    "bl-e0a0df72-de6e-46ab-800b-e1e3e8dfc387",
+    "tag-__patents____swarm____claim-language____prior-art____filing__",
+    "? ?}&?#??X\b",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "7?e?7???\f3?",
+    "?of?7???"
+   ],
+   "n_returned": 10,
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+   "error": null,
+   "hit@5": 0.0,
+   "recall@5": 0.0,
+   "recall@10": 0.0,
+   "precision@5": 0.0,
+   "mrr@10": 0.0
+  },
+  {
+   "id": "q31",
+   "category": "associative",
+   "query": "hope won inside the narrative preface",
+   "returned": [
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+    "bl-dc8c7e02-eb37-48ae-a6f8-9b512803ae16",
+    "mem-8d1bafe6-209c-456c-9a25-9a927bc5a16d",
+    "bl-0de4e61b-6562-49e5-b7df-ebb809a01723",
+    "bl-8ef1ba6b-3fa0-4dbd-98c5-31665e5694a1",
+    "mem-22f5f665-3ad2-4063-88b0-915849a795f5",
+    "? ?}&?#??X\b",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd",
+    "?Q??m?;��`'",
+    "R^??m?;��?'"
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q32",
+   "category": "associative",
+   "query": "man of the house six years old expectation",
+   "returned": [
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+    "mem-394cc9e8-049b-45bc-a380-66314f14e367",
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+    "bl-4a6746e8-191f-48fc-8bfb-c4dc73b80bcd",
+    "tag-command-pattern",
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+}

tools/retrieval-eval/results-act-r3.json

@@ -0,0 +1,942 @@
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+    "art-2f29ad36-6ee6-4a0e-8d72-0eaf7d12d3a9",
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+  {
+   "id": "q16",
+   "category": "paraphrase",
+   "query": "choosing an uncomfortable fact over a pleasant fiction",
+   "returned": [
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+    "bl-fc893be3-e6b4-4ef6-93b0-d54ca5f89083",
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+    "tag-anthropic-contrast",
+    "tag-voice-training",
+    "tag-ebd",
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+  },
+  {
+   "id": "q17",
+   "category": "paraphrase",
+   "query": "a tight payload beats a bloated one",
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+    "tag-phase-3",
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+    "tag-guilds",
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+  },
+  {
+   "id": "q18",
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+   "query": "if you are able and nobody is coming the job is yours",
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+  },
+  {
+   "id": "q19",
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+   "query": "learning is the wealth creditors cannot seize",
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+    "bl-b019ce7a-1b21-436e-812d-032f50c6c45f",
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+  },
+  {
+   "id": "q20",
+   "category": "paraphrase",
+   "query": "reliability proven by track record not assertion",
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+    "mem-23d22bc1-a097-446b-8f11-8aff099e0b76",
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+  {
+   "id": "q21",
+   "category": "paraphrase",
+   "query": "boundaries that enable instead of confine",
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+  {
+   "id": "q22",
+   "category": "paraphrase",
+   "query": "what shifts tells you where to cut a system apart",
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+    "tag-identity-studio",
+    "tag-finance",
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+  },
+  {
+   "id": "q23",
+   "category": "paraphrase",
+   "query": "a mind that compounds instead of resetting each day",
+   "returned": [
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+    "tag-performed-values",
+    "tag-turing-test",
+    "tag-sealed",
+    "tag-part-5",
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+  },
+  {
+   "id": "q24",
+   "category": "paraphrase",
+   "query": "loved for the unedited self and not the polished exterior",
+   "returned": [
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+    "project-Imprint__leadership_development__feedback_frameworks__performance__presence_",
+    "bl-a9e57bb2-00a1-4867-ab59-5d9271134b50",
+    "bl-c7793c4a-7630-47fc-a462-d23059087e80",
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+  },
+  {
+   "id": "q25",
+   "category": "paraphrase",
+   "query": "cheerfulness you arrive at instead of assuming",
+   "returned": [
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+    "bl-3f57bc69-7285-4f4a-a861-2de52efca058",
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+  },
+  {
+   "id": "q26",
+   "category": "paraphrase",
+   "query": "a childhood offering no solid foundation to inherit",
+   "returned": [
+    "tag-memory-model",
+    "tag-storage",
+    "tag-ga4",
+    "tag-potions",
+    "tag-resonance",
+    "tag-neuron",
+    "? ?}&?#??X\b",
+    "art-0f0277a1-4a8e-4645-95dd-fa379976f31c",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd",
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+  },
+  {
+   "id": "q27",
+   "category": "associative",
+   "query": "Grandma Lucas stroke February 2006 goodbye window",
+   "returned": [
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+    "mem-927f41ab-8ede-4f58-acb3-995db16ac775",
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+    "bl-4476e856-c567-4b49-8ff7-d7dca3e5715e",
+    "tag-upload-window",
+    "? ?}&?#??X\b",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q28",
+   "category": "associative",
+   "query": "Marines hernia sepsis medical ward",
+   "returned": [
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+    "mem-0f31141d-3ac5-44b2-9942-be7e4e6feb79",
+    "knw-08559f5c-2306-4220-a146-398c74f1643c",
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+    "mem-481c769c-68cc-45c7-bc37-c0d9778fa648",
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+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q29",
+   "category": "associative",
+   "query": "Sarah Bishop Dyer trailer performance",
+   "returned": [
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+    "kn-eb1c6d99-d603-4f33-be9a-c63a178690c6",
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+    "bl-7fa1b1a8-b80a-4f28-b162-bfe73765b4f8",
+    "mem-89c02aae-d3ca-43f9-9e5d-eb369896276c",
+    "tag-sarah",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "? ?}&?#??X\b",
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q30",
+   "category": "associative",
+   "query": "Swarm Architecture containment lateral worker",
+   "returned": [
+    "mem-265a7107-73b3-4410-9aff-43787d5f473b",
+    "mem-9d1bf963-1b40-4588-bdb3-0432646cc623",
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+    "mem-3987d374-3c48-4e8e-b06d-0c363f55ed9c",
+    "bl-e0a0df72-de6e-46ab-800b-e1e3e8dfc387",
+    "tag-__patents____swarm____claim-language____prior-art____filing__",
+    "mem-ab34c2f7-3243-424b-affa-25555f6cf9cc",
+    "? ?}&?#??X\b",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "7?e?7???\f3?"
+   ],
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+   "precision@5": 0.0,
+   "mrr@10": 0.0
+  },
+  {
+   "id": "q31",
+   "category": "associative",
+   "query": "hope won inside the narrative preface",
+   "returned": [
+    "kn-dca14c4c-4859-47b0-996e-33964ba61a87",
+    "bl-e148d23c-24e8-4122-9915-d1c11f22052f",
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+    "mem-8d1bafe6-209c-456c-9a25-9a927bc5a16d",
+    "mem-22f5f665-3ad2-4063-88b0-915849a795f5",
+    "tag-dark-theme",
+    "? ?}&?#??X\b",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd",
+    "?Q??m?;��`'",
+    "R^??m?;��?'"
+   ],
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+   "error": null,
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q32",
+   "category": "associative",
+   "query": "man of the house six years old expectation",
+   "returned": [
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "bl-ffa22d7e-42a9-4bd2-a428-1d2df243ac93",
+    "mem-ef0091d8-1b65-431e-afa8-c6c4ee5779c9",
+    "bl-452a4710-3d2b-4e0f-9413-49a66423bc9a",
+    "bl-4a6746e8-191f-48fc-8bfb-c4dc73b80bcd",
+    "tag-withholding",
+    "tag-offline",
+    "art-80ca3d31-84dc-4502-83f4-538372b9764f",
+    "art-2fabd873-d787-49cb-ad30-d4ed9fcff8ef",
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q33",
+   "category": "nonsense",
+   "query": "zqxjvw plimforth grebulon",
+   "returned": [],
+   "n_returned": 0,
+   "latency_ms": 1318.6,
+   "error": null,
+   "clean": true,
+   "false_positives": 0
+  },
+  {
+   "id": "q34",
+   "category": "nonsense",
+   "query": "flarnbistle quommetry",
+   "returned": [],
+   "n_returned": 0,
+   "latency_ms": 875.7,
+   "error": null,
+   "clean": true,
+   "false_positives": 0
+  },
+  {
+   "id": "q35",
+   "category": "nonsense",
+   "query": "xxqzzt vurblenacht throom",
+   "returned": [
+    "kn-333542cb-6dab-4662-9725-bf7440d28bf7",
+    "? ?}&?#??X\b",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd",
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+    "knw-920c891f-bb8c-48c4-9afc-018ef12dcdc4"
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+}

tools/retrieval-eval/results-assoc-leg-r2.json

@@ -0,0 +1,956 @@
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+   "query": "a tight payload beats a bloated one",
+   "returned": [
+    "kn-d7c1e0fb-fa59-46d3-b4c9-a0d1d437a491",
+    "7?e?7???\f3?",
+    "??o?'?B???k",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "kn-e8423822-eacf-4029-aa7b-10d4d28d621e",
+    "? ?}&?#??X\b",
+    "?of?7???",
+    "kn-9397c74b-35f3-4428-b4b0-5123353bbcd1",
+    "? ?}&?#??X\b"
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+  },
+  {
+   "id": "q18",
+   "category": "paraphrase",
+   "query": "if you are able and nobody is coming the job is yours",
+   "returned": [
+    "7?e?7???\f3?",
+    "ctx-cc7f",
+    "?of?7???",
+    "ctx-4a41",
+    "imp-dce1da0f-8776-4a9e-972b-33411a7ca138",
+    "a1000001-0000-0000-0000-000000000001",
+    "knw-729fc901-8335-44c4-9f3a-b150b4aa0915",
+    "kn-5b606390-a52d-4ca2-8e0e-eba141d13440",
+    "ctx-175f"
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q19",
+   "category": "paraphrase",
+   "query": "learning is the wealth creditors cannot seize",
+   "returned": [
+    "knw-e24d6339-5ff3-4bed-ba53-707ffd0dc70a",
+    "knw-ed33e669-0790-44cb-a036-958d605c6fea",
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+    "kn-57b4c5e7-40c6-4c90-bf14-71841b0081d4",
+    "8cbb60c5-4999-4ec1-8682-2592aedc4249",
+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356",
+    "knw-920c891f-bb8c-48c4-9afc-018ef12dcdc4"
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q20",
+   "category": "paraphrase",
+   "query": "reliability proven by track record not assertion",
+   "returned": [
+    "? ?}&?#??X\b",
+    "kn-5de5a9ac-fd15-45ab-bf18-77566781cf40",
+    "? ?}&?#??X\b",
+    "knw-f671966c-3387-4848-abca-b5deec122e00",
+    "? ?}&?#??X\b",
+    "a708dd6e-fe73-4f2f-a21e-89daa0985487",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "7?e?7???\f3?"
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+   "mrr@10": 0.5
+  },
+  {
+   "id": "q21",
+   "category": "paraphrase",
+   "query": "boundaries that enable instead of confine",
+   "returned": [
+    "? ?}&?#??X\b",
+    "kn-a5b3d0ac-f6a1-49a4-aebb-b8b4cd67fe83",
+    "? ?}&?#??X\b",
+    "project-Source_kn-6f248a50__Add_containment_rules__convergence__location-independence__failure_modes_",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356",
+    "ԍ????X????",
+    "??????X??2c",
+    "dR????X?-?S"
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+  },
+  {
+   "id": "q22",
+   "category": "paraphrase",
+   "query": "what shifts tells you where to cut a system apart",
+   "returned": [
+    "7?e?7???\f3?",
+    "knw-9e74ee95-ba7d-49b1-9262-977eae9729d1",
+    "kn-f8974b26-78a6-4aad-b893-19a73b20013d",
+    "kn-9397c74b-35f3-4428-b4b0-5123353bbcd1",
+    "?of?7???",
+    "dR????X?-?S",
+    "dz????Xƹ?i",
+    "ԍ????X????",
+    "??????X??2c",
+    "kn-d7c1e0fb-fa59-46d3-b4c9-a0d1d437a491"
+   ],
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+  },
+  {
+   "id": "q23",
+   "category": "paraphrase",
+   "query": "a mind that compounds instead of resetting each day",
+   "returned": [
+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356",
+    "mem-b43f6ef4-2f5a-418d-b5ce-3f21520cf6b8",
+    "????7???Ջ3",
+    "a1000001-0000-0000-0000-000000000001",
+    "?ǚ?7??????",
+    "mem-024598a9-ed2e-4eeb-b1e1-5410856ff132",
+    "7?e?7???\f3?",
+    "mem-ade9440f-f161-4c18-9b35-1976257e6ebb",
+    "?of?7???",
+    "ea95f600-8dfd-4c7e-b077-a93dc3cd3623"
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+  },
+  {
+   "id": "q24",
+   "category": "paraphrase",
+   "query": "loved for the unedited self and not the polished exterior",
+   "returned": [
+    "mem-bbb126a1-b297-42bb-86be-796871829c94",
+    "mem-45022957-2d78-48aa-a714-16d6eca52e0f",
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "knw-35940684-abc4-42f0-b942-818f66b1f69a",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "art-0f0277a1-4a8e-4645-95dd-fa379976f31c",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd",
+    "7?e?7???\f3?",
+    "? ?}&?#??X\b",
+    "'?T?a\"B~-?8"
+   ],
+   "n_returned": 10,
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q25",
+   "category": "paraphrase",
+   "query": "cheerfulness you arrive at instead of assuming",
+   "returned": [
+    "?ǚ?7??????",
+    "knw-08559f5c-2306-4220-a146-398c74f1643c",
+    "015644f5-8194-4af0-800d-dd4a0cd71396",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "knw-d357b6bb-ad8a-4791-b516-426aea45fa5b",
+    "7?e?7???\f3?",
+    "ctx-bb74",
+    "??S?7???",
+    "knw-f671966c-3387-4848-abca-b5deec122e00"
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q26",
+   "category": "paraphrase",
+   "query": "a childhood offering no solid foundation to inherit",
+   "returned": [
+    "? ?}&?#??X\b",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "? ?}&?#??X\b",
+    "kn-6061318f-046b-4935-907d-8eafdce14930",
+    "? ?}&?#??X\b",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "kn-0bb4f021-56de-4947-a35b-a37209e7ba21",
+    "7?e?7???\f3?",
+    "mem-7b74cac0-905f-4c35-9688-fbcce105a177"
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+  },
+  {
+   "id": "q27",
+   "category": "associative",
+   "query": "Grandma Lucas stroke February 2006 goodbye window",
+   "returned": [
+    "? ?}&?#??X\b",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "? ?}&?#??X\b",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "? ?}&?#??X\b",
+    "kn-0bb4f021-56de-4947-a35b-a37209e7ba21",
+    "? ?}&?#??X\b",
+    "kn-e0423482-cfa5-4796-8689-8495c93b66bc"
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+   "mrr@10": 0.2
+  },
+  {
+   "id": "q28",
+   "category": "associative",
+   "query": "Marines hernia sepsis medical ward",
+   "returned": [
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "54608b69-78b6-4239-b60f-b8206cfecacc",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
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+  },
+  {
+   "id": "q29",
+   "category": "associative",
+   "query": "Sarah Bishop Dyer trailer performance",
+   "returned": [
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "? ?}&?#??X\b",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "? ?}&?#??X\b",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "? ?}&?#??X\b",
+    "015644f5-8194-4af0-800d-dd4a0cd71396",
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "kn-5de5a9ac-fd15-45ab-bf18-77566781cf40"
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+   "mrr@10": 0.25
+  },
+  {
+   "id": "q30",
+   "category": "associative",
+   "query": "Swarm Architecture containment lateral worker",
+   "returned": [
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "bl-9bde67c1-f0ba-4c3a-8fe5-de0deee0ce43",
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+    "ctx-bb74",
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+  {
+   "id": "q31",
+   "category": "associative",
+   "query": "hope won inside the narrative preface",
+   "returned": [
+    "kn-e0423482-cfa5-4796-8689-8495c93b66bc",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
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+    "kn-5b606390-a52d-4ca2-8e0e-eba141d13440",
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+    "kn-13f60407-7b70-4db1-964f-ea1f8196efbd",
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+    "knw-d357b6bb-ad8a-4791-b516-426aea45fa5b"
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+   "mrr@10": 0.5
+  },
+  {
+   "id": "q32",
+   "category": "associative",
+   "query": "man of the house six years old expectation",
+   "returned": [
+    "? ?}&?#??X\b",
+    "4f698ae6-c40e-464e-9798-50350991a188",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "kn-6061318f-046b-4935-907d-8eafdce14930",
+    "? ?}&?#??X\b",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "? ?}&?#??X\b",
+    "kn-0bb4f021-56de-4947-a35b-a37209e7ba21",
+    "? ?}&?#??X\b",
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+  {
+   "id": "q33",
+   "category": "nonsense",
+   "query": "zqxjvw plimforth grebulon",
+   "returned": [],
+   "n_returned": 0,
+   "latency_ms": 750.0,
+   "error": null,
+   "clean": true,
+   "false_positives": 0
+  },
+  {
+   "id": "q34",
+   "category": "nonsense",
+   "query": "flarnbistle quommetry",
+   "returned": [],
+   "n_returned": 0,
+   "latency_ms": 531.1,
+   "error": null,
+   "clean": true,
+   "false_positives": 0
+  },
+  {
+   "id": "q35",
+   "category": "nonsense",
+   "query": "xxqzzt vurblenacht throom",
+   "returned": [
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "?V?",
+    "knw-6b48dce2-f21c-452a-9db5-4e6aa61c87ca",
+    "knw-920c891f-bb8c-48c4-9afc-018ef12dcdc4",
+    "?m?\\}Q??6??",
+    "8cbb60c5-4999-4ec1-8682-2592aedc4249",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "?m?\\}Q??6??",
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+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd"
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+   "false_positives": 10
+  },
+  {
+   "id": "q36",
+   "category": "superseded",
+   "query": "is the self-improvement architecture called DARMA or DHARMA",
+   "returned": [
+    "7?e?7???\f3?",
+    "mem-80d7416b-20e9-48a0-b176-b215527e2f56",
+    "? ?}&?#??X\b",
+    "mem-f3b37427-b7d1-4f7e-b32c-0241a20ce8da",
+    "? ?}&?#??X\b",
+    "kn-b7e98d63-8b83-4911-b4d0-990602a7f575",
+    "?of?7???",
+    "knw-e047bb42-dc5b-4383-9e88-e508dc03abe3",
+    "? ?}&?#??X\b",
+    "bl-5b17bd3b-0c41-46cb-a710-6fa4429692ff"
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+   "outranks": true,
+   "rank_correct": 2,
+   "rank_stale": 10
+  },
+  {
+   "id": "q37",
+   "category": "superseded",
+   "query": "how many provisional patents does Will actually have",
+   "returned": [
+    "? ?}&?#??X\b",
+    "12082f7e-e320-438b-bd65-083d8259748f",
+    "? ?}&?#??X\b",
+    "527ecb25-2587-47eb-8269-73be2431abd4",
+    "? ?}&?#??X\b",
+    "3cf706a1-3825-45d8-b0a9-06cae6cdf5b8",
+    "? ?}&?#??X\b",
+    "4f698ae6-c40e-464e-9798-50350991a188",
+    "? ?}&?#??X\b",
+    "be3b6036-6eca-44a7-8fdf-37b23edfdfd1"
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+  {
+   "id": "q38",
+   "category": "superseded",
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+}

tools/retrieval-eval/results-assoc-leg.json

@@ -0,0 +1,956 @@
+{
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+ "corpus": "/Users/timlingo/neuron-eval-corpora/snapshot-pre-repair-20260806-embedded.json",
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+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356",
+    "knw-920c891f-bb8c-48c4-9afc-018ef12dcdc4"
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q20",
+   "category": "paraphrase",
+   "query": "reliability proven by track record not assertion",
+   "returned": [
+    "? ?}&?#??X\b",
+    "kn-5de5a9ac-fd15-45ab-bf18-77566781cf40",
+    "? ?}&?#??X\b",
+    "knw-f671966c-3387-4848-abca-b5deec122e00",
+    "? ?}&?#??X\b",
+    "a708dd6e-fe73-4f2f-a21e-89daa0985487",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "7?e?7???\f3?"
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+   "recall@5": 1.0,
+   "recall@10": 1.0,
+   "precision@5": 0.2,
+   "mrr@10": 0.5
+  },
+  {
+   "id": "q21",
+   "category": "paraphrase",
+   "query": "boundaries that enable instead of confine",
+   "returned": [
+    "? ?}&?#??X\b",
+    "kn-a5b3d0ac-f6a1-49a4-aebb-b8b4cd67fe83",
+    "? ?}&?#??X\b",
+    "project-Source_kn-6f248a50__Add_containment_rules__convergence__location-independence__failure_modes_",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356",
+    "ԍ????X????",
+    "??????X??2c",
+    "dR????X?-?S"
+   ],
+   "n_returned": 10,
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+   "error": null,
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+   "recall@10": 1.0,
+   "precision@5": 0.2,
+   "mrr@10": 0.5
+  },
+  {
+   "id": "q22",
+   "category": "paraphrase",
+   "query": "what shifts tells you where to cut a system apart",
+   "returned": [
+    "7?e?7???\f3?",
+    "knw-9e74ee95-ba7d-49b1-9262-977eae9729d1",
+    "kn-f8974b26-78a6-4aad-b893-19a73b20013d",
+    "kn-9397c74b-35f3-4428-b4b0-5123353bbcd1",
+    "?of?7???",
+    "dR????X?-?S",
+    "dz????Xƹ?i",
+    "ԍ????X????",
+    "??????X??2c",
+    "kn-d7c1e0fb-fa59-46d3-b4c9-a0d1d437a491"
+   ],
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+  },
+  {
+   "id": "q23",
+   "category": "paraphrase",
+   "query": "a mind that compounds instead of resetting each day",
+   "returned": [
+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356",
+    "mem-b43f6ef4-2f5a-418d-b5ce-3f21520cf6b8",
+    "????7???Ջ3",
+    "a1000001-0000-0000-0000-000000000001",
+    "?ǚ?7??????",
+    "mem-024598a9-ed2e-4eeb-b1e1-5410856ff132",
+    "7?e?7???\f3?",
+    "mem-ade9440f-f161-4c18-9b35-1976257e6ebb",
+    "?of?7???",
+    "ea95f600-8dfd-4c7e-b077-a93dc3cd3623"
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q24",
+   "category": "paraphrase",
+   "query": "loved for the unedited self and not the polished exterior",
+   "returned": [
+    "mem-bbb126a1-b297-42bb-86be-796871829c94",
+    "mem-45022957-2d78-48aa-a714-16d6eca52e0f",
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
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+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd",
+    "7?e?7???\f3?",
+    "? ?}&?#??X\b",
+    "'?T?a\"B~-?8"
+   ],
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q25",
+   "category": "paraphrase",
+   "query": "cheerfulness you arrive at instead of assuming",
+   "returned": [
+    "?ǚ?7??????",
+    "knw-08559f5c-2306-4220-a146-398c74f1643c",
+    "015644f5-8194-4af0-800d-dd4a0cd71396",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
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+    "knw-d357b6bb-ad8a-4791-b516-426aea45fa5b",
+    "7?e?7???\f3?",
+    "ctx-bb74",
+    "??S?7???",
+    "knw-f671966c-3387-4848-abca-b5deec122e00"
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q26",
+   "category": "paraphrase",
+   "query": "a childhood offering no solid foundation to inherit",
+   "returned": [
+    "? ?}&?#??X\b",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "? ?}&?#??X\b",
+    "kn-6061318f-046b-4935-907d-8eafdce14930",
+    "? ?}&?#??X\b",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "kn-0bb4f021-56de-4947-a35b-a37209e7ba21",
+    "7?e?7???\f3?",
+    "mem-7b74cac0-905f-4c35-9688-fbcce105a177"
+   ],
+   "n_returned": 10,
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+   "precision@5": 0.2,
+   "mrr@10": 0.25
+  },
+  {
+   "id": "q27",
+   "category": "associative",
+   "query": "Grandma Lucas stroke February 2006 goodbye window",
+   "returned": [
+    "? ?}&?#??X\b",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "? ?}&?#??X\b",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "? ?}&?#??X\b",
+    "kn-0bb4f021-56de-4947-a35b-a37209e7ba21",
+    "? ?}&?#??X\b",
+    "kn-e0423482-cfa5-4796-8689-8495c93b66bc"
+   ],
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+   "mrr@10": 0.2
+  },
+  {
+   "id": "q28",
+   "category": "associative",
+   "query": "Marines hernia sepsis medical ward",
+   "returned": [
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "54608b69-78b6-4239-b60f-b8206cfecacc",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "bl-33ecccc2-e37f-43db-91b3-c2a86f08aaac",
+    "015644f5-8194-4af0-800d-dd4a0cd71396",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
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+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71"
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+   "mrr@10": 0.25
+  },
+  {
+   "id": "q29",
+   "category": "associative",
+   "query": "Sarah Bishop Dyer trailer performance",
+   "returned": [
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "? ?}&?#??X\b",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "? ?}&?#??X\b",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "? ?}&?#??X\b",
+    "015644f5-8194-4af0-800d-dd4a0cd71396",
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "kn-5de5a9ac-fd15-45ab-bf18-77566781cf40"
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+   "precision@5": 0.2,
+   "mrr@10": 0.25
+  },
+  {
+   "id": "q30",
+   "category": "associative",
+   "query": "Swarm Architecture containment lateral worker",
+   "returned": [
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "bl-9bde67c1-f0ba-4c3a-8fe5-de0deee0ce43",
+    "ctx-e5427d7d",
+    "kn-b36902cc-0b05-44ba-9aa7-800e5dea9ca9",
+    "ctx-bb74",
+    "8cbb60c5-4999-4ec1-8682-2592aedc4249",
+    "kn-6f248a50-355b-47bb-aec8-e0e646a9b077",
+    "kn-5adecd7e-d6db-4576-87fe-6ef8a935cea6",
+    "bl-0fac287f-f4c0-4f15-bc4d-ff7f8a7af3ae",
+    "bl-8c2d5f51-3ccd-4c2e-848a-eb60d90a3b98"
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q31",
+   "category": "associative",
+   "query": "hope won inside the narrative preface",
+   "returned": [
+    "kn-e0423482-cfa5-4796-8689-8495c93b66bc",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "bl-2b00aeb0-c0fa-4a9f-8f30-4207e98b3d52",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "kn-5b606390-a52d-4ca2-8e0e-eba141d13440",
+    "knw-4aebd815-4eaf-49d7-954b-03595f3d48be",
+    "kn-13f60407-7b70-4db1-964f-ea1f8196efbd",
+    "knw-9e74ee95-ba7d-49b1-9262-977eae9729d1",
+    "knw-d357b6bb-ad8a-4791-b516-426aea45fa5b"
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+   "precision@5": 0.4,
+   "mrr@10": 0.5
+  },
+  {
+   "id": "q32",
+   "category": "associative",
+   "query": "man of the house six years old expectation",
+   "returned": [
+    "? ?}&?#??X\b",
+    "4f698ae6-c40e-464e-9798-50350991a188",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "kn-6061318f-046b-4935-907d-8eafdce14930",
+    "? ?}&?#??X\b",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "? ?}&?#??X\b",
+    "kn-0bb4f021-56de-4947-a35b-a37209e7ba21",
+    "? ?}&?#??X\b",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71"
+   ],
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+   "precision@5": 0.0,
+   "mrr@10": 0.16666666666666666
+  },
+  {
+   "id": "q33",
+   "category": "nonsense",
+   "query": "zqxjvw plimforth grebulon",
+   "returned": [],
+   "n_returned": 0,
+   "latency_ms": 746.6,
+   "error": null,
+   "clean": true,
+   "false_positives": 0
+  },
+  {
+   "id": "q34",
+   "category": "nonsense",
+   "query": "flarnbistle quommetry",
+   "returned": [],
+   "n_returned": 0,
+   "latency_ms": 519.1,
+   "error": null,
+   "clean": true,
+   "false_positives": 0
+  },
+  {
+   "id": "q35",
+   "category": "nonsense",
+   "query": "xxqzzt vurblenacht throom",
+   "returned": [
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "?V?",
+    "knw-6b48dce2-f21c-452a-9db5-4e6aa61c87ca",
+    "knw-920c891f-bb8c-48c4-9afc-018ef12dcdc4",
+    "?m?\\}Q??6??",
+    "8cbb60c5-4999-4ec1-8682-2592aedc4249",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "?m?\\}Q??6??",
+    "knw-723551f5-1950-42a3-8b89-b6a06913cef0",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd"
+   ],
+   "n_returned": 10,
+   "latency_ms": 764.0,
+   "error": null,
+   "clean": false,
+   "false_positives": 10
+  },
+  {
+   "id": "q36",
+   "category": "superseded",
+   "query": "is the self-improvement architecture called DARMA or DHARMA",
+   "returned": [
+    "7?e?7???\f3?",
+    "mem-80d7416b-20e9-48a0-b176-b215527e2f56",
+    "? ?}&?#??X\b",
+    "mem-f3b37427-b7d1-4f7e-b32c-0241a20ce8da",
+    "? ?}&?#??X\b",
+    "kn-b7e98d63-8b83-4911-b4d0-990602a7f575",
+    "?of?7???",
+    "knw-e047bb42-dc5b-4383-9e88-e508dc03abe3",
+    "? ?}&?#??X\b",
+    "bl-5b17bd3b-0c41-46cb-a710-6fa4429692ff"
+   ],
+   "n_returned": 10,
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+   "error": null,
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+   "precision@5": 0.2,
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+   "outranks": true,
+   "rank_correct": 2,
+   "rank_stale": 10
+  },
+  {
+   "id": "q37",
+   "category": "superseded",
+   "query": "how many provisional patents does Will actually have",
+   "returned": [
+    "? ?}&?#??X\b",
+    "12082f7e-e320-438b-bd65-083d8259748f",
+    "? ?}&?#??X\b",
+    "527ecb25-2587-47eb-8269-73be2431abd4",
+    "? ?}&?#??X\b",
+    "3cf706a1-3825-45d8-b0a9-06cae6cdf5b8",
+    "? ?}&?#??X\b",
+    "4f698ae6-c40e-464e-9798-50350991a188",
+    "? ?}&?#??X\b",
+    "be3b6036-6eca-44a7-8fdf-37b23edfdfd1"
+   ],
+   "n_returned": 10,
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+   "hit@5": 0.0,
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+   "outranks": true,
+   "rank_correct": 6,
+   "rank_stale": null
+  },
+  {
+   "id": "q38",
+   "category": "superseded",
+   "query": "is MCP still the live integration layer",
+   "returned": [
+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356",
+    "bl-7328cbe3-0200-43c2-88e7-0a164e15fca4",
+    "7?e?7???\f3?",
+    "mem-101e81b4-8097-4749-8d8d-7bb66de34517",
+    "? ?}&?#??X\b",
+    "4509ed62-9fb2-48b8-9038-ac569fca9604",
+    "%???2??jH??",
+    "art-8a0870d5-a716-4672-8094-f7463af1265b",
+    "???Ͼd??W\b?",
+    "bl-556438af-57b2-4bd8-a747-9f868aaee290"
+   ],
+   "n_returned": 10,
+   "latency_ms": 1030.5,
+   "error": null,
+   "hit@5": 0.0,
+   "recall@5": 0.0,
+   "recall@10": 0.0,
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+   "outranks": false,
+   "rank_correct": null,
+   "rank_stale": 4
+  }
+ ]
+}

tools/retrieval-eval/results-baseline-embcorpus.json

@@ -0,0 +1,945 @@
+{
+ "label": "baseline-embcorpus",
+ "soul_binary": "/private/tmp/claude-501/-Users-timlingo/82369039-a20e-4b5a-8a5e-28234a57b996/scratchpad/soul-baseline",
+ "soul_md5": "5cc9521734907cf2da30f0af94498c06",
+ "corpus": "/private/tmp/claude-501/-Users-timlingo/82369039-a20e-4b5a-8a5e-28234a57b996/scratchpad/corpus-embedded.json",
+ "corpus_nodes": 78768,
+ "corpus_edges": 14214,
+ "gold_set": "/Users/timlingo/Development/neuron-technologies/_wt-eval/tools/retrieval-eval/gold_set.json",
+ "limit": 10,
+ "port": 7893,
+ "wall_clock_s": 48.4,
+ "child_pid": 85995,
+ "child_confirmed_dead": true,
+ "aggregate": {
+  "n_queries": 38,
+  "n_scored": 35,
+  "hit@5": 0.34285714285714286,
+  "recall@5": 0.26947278911564626,
+  "recall@10": 0.3333333333333333,
+  "precision@5": 0.12000000000000001,
+  "mrr@10": 0.2943197278911564,
+  "nonsense_clean": "2/3",
+  "superseded_outranks": "1/3",
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+   "id": "q07",
+   "category": "phrase",
+   "query": "patterns not returns",
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+   "query": "Grandma Lucas",
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+    "? ?}&?#??X\b",
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+   "id": "q10",
+   "category": "phrase",
+   "query": "Directed Harmonic",
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+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356",
+    "ԍ????X????",
+    "bl-dcee1887-34c4-4ffa-9119-1e291685ba08",
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+    "mem-7eeacad7-d7c2-4c2b-8348-19a59aa6dbaf",
+    "????7???Ջ3",
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+   "id": "q11",
+   "category": "phrase",
+   "query": "Sarah Bishop",
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+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
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+    "? ?}&?#??X\b",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "766de879-f9d0-4a07-b6df-b43ee13763d8",
+    "mem-a9a9ce95-0d64-46eb-9db8-ff81d78ade35",
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+  },
+  {
+   "id": "q12",
+   "category": "phrase",
+   "query": "Directed Autonomous Runtime Modification",
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+    "bl-145a0985-2382-400f-a7c5-c335c5e30a72",
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+    "mem-e6327f52-2bda-4ce7-9471-2fffd1e172de",
+    "7?e?7???\f3?",
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+    "? ?}&?#??X\b"
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+  },
+  {
+   "id": "q13",
+   "category": "phrase",
+   "query": "zero-knowledge encrypted backup",
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+    "deda48cd-5e1a-46cb-bd43-8016afdb3a8a",
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+    "mem-a3c97012-5fa3-4915-a839-2c75c72005e0",
+    "mem-7cd90611-88a3-423d-a38a-0db2812952fa",
+    "bl-07375bf9-a169-42cd-adb3-7d32b25982f0",
+    "bl-ec84b63d-b278-4944-8d7f-4aa7a51c0315",
+    "7?e?7???\f3?",
+    "?of?7???",
+    "? ?}&?#??X\b"
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+  },
+  {
+   "id": "q14",
+   "category": "paraphrase",
+   "query": "the elderly relative who passed while he stayed away",
+   "returned": [
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "????7???Ջ3",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "art-0f0277a1-4a8e-4645-95dd-fa379976f31c"
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+  },
+  {
+   "id": "q15",
+   "category": "paraphrase",
+   "query": "a soldier sidelined by illness who refused to quit",
+   "returned": [
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+    "art-2fabd873-d787-49cb-ad30-d4ed9fcff8ef",
+    "art-2f29ad36-6ee6-4a0e-8d72-0eaf7d12d3a9",
+    "? ?}&?#??X\b",
+    "kn-a31e1001-342e-4deb-a2e6-6d02d1f22dee",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "knw-9e74ee95-ba7d-49b1-9262-977eae9729d1",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b"
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+  },
+  {
+   "id": "q16",
+   "category": "paraphrase",
+   "query": "choosing an uncomfortable fact over a pleasant fiction",
+   "returned": [
+    "7?e?7???\f3?",
+    "? ?}&?#??X\b",
+    "kn-f8974b26-78a6-4aad-b893-19a73b20013d",
+    "?of?7???",
+    "????7???Ջ3",
+    "kn-d97920d0-1649-4223-9508-c0bb621e7fc0",
+    "kn-57b4c5e7-40c6-4c90-bf14-71841b0081d4",
+    "kn-9397c74b-35f3-4428-b4b0-5123353bbcd1",
+    "kn-81c24d13-a73b-4767-819c-dafaacc1498e",
+    "? ?}&?#??X\b"
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+  },
+  {
+   "id": "q17",
+   "category": "paraphrase",
+   "query": "a tight payload beats a bloated one",
+   "returned": [
+    "kn-d7c1e0fb-fa59-46d3-b4c9-a0d1d437a491",
+    "7?e?7???\f3?",
+    "? ?}&?#??X\b",
+    "kn-e8423822-eacf-4029-aa7b-10d4d28d621e",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "??o?'?B???k",
+    "kn-9397c74b-35f3-4428-b4b0-5123353bbcd1",
+    "? ?}&?#??X\b",
+    "?of?7???"
+   ],
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+  },
+  {
+   "id": "q18",
+   "category": "paraphrase",
+   "query": "if you are able and nobody is coming the job is yours",
+   "returned": [
+    "7?e?7???\f3?",
+    "?of?7???",
+    "imp-dce1da0f-8776-4a9e-972b-33411a7ca138",
+    "kn-5b606390-a52d-4ca2-8e0e-eba141d13440",
+    "kn-83bb86c6-521d-416c-a86e-6e29c2d8f102",
+    "kn-f8974b26-78a6-4aad-b893-19a73b20013d",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b"
+   ],
+   "n_returned": 9,
+   "latency_ms": 1350.4,
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+  },
+  {
+   "id": "q19",
+   "category": "paraphrase",
+   "query": "learning is the wealth creditors cannot seize",
+   "returned": [
+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356",
+    "knw-7902acca-604e-409b-8faf-ad85424211d0",
+    "knw-e24d6339-5ff3-4bed-ba53-707ffd0dc70a",
+    "kn-57b4c5e7-40c6-4c90-bf14-71841b0081d4",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "7?e?7???\f3?",
+    "??o?'?B???k",
+    "? ?}&?#??X\b",
+    "kn-0625e393-067c-4bba-8389-7e1b79265142",
+    "ע?RGk?\tH(?"
+   ],
+   "n_returned": 10,
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q20",
+   "category": "paraphrase",
+   "query": "reliability proven by track record not assertion",
+   "returned": [
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "7?e?7???\f3?",
+    "?of?7???",
+    "art-2fabd873-d787-49cb-ad30-d4ed9fcff8ef",
+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356"
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+  },
+  {
+   "id": "q21",
+   "category": "paraphrase",
+   "query": "boundaries that enable instead of confine",
+   "returned": [
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "??????X??2c",
+    "ԍ????X????",
+    "dR????X?-?S",
+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356",
+    "dz????Xƹ?i",
+    "kn-d7c1e0fb-fa59-46d3-b4c9-a0d1d437a491"
+   ],
+   "n_returned": 10,
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q22",
+   "category": "paraphrase",
+   "query": "what shifts tells you where to cut a system apart",
+   "returned": [
+    "7?e?7???\f3?",
+    "kn-9397c74b-35f3-4428-b4b0-5123353bbcd1",
+    "?of?7???",
+    "kn-f8974b26-78a6-4aad-b893-19a73b20013d",
+    "knw-9e74ee95-ba7d-49b1-9262-977eae9729d1",
+    "dR????X?-?S",
+    "dz????Xƹ?i",
+    "ԍ????X????",
+    "??????X??2c",
+    "kn-d7c1e0fb-fa59-46d3-b4c9-a0d1d437a491"
+   ],
+   "n_returned": 10,
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q23",
+   "category": "paraphrase",
+   "query": "a mind that compounds instead of resetting each day",
+   "returned": [
+    "?ǚ?7??????",
+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356",
+    "????7???Ջ3",
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+  {
+   "id": "q26",
+   "category": "paraphrase",
+   "query": "a childhood offering no solid foundation to inherit",
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+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
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+  },
+  {
+   "id": "q29",
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+   "query": "man of the house six years old expectation",
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+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "? ?}&?#??X\b",
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+   "id": "q33",
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+   "query": "flarnbistle quommetry",
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+   "n_returned": 0,
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+   "id": "q35",
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+   "query": "xxqzzt vurblenacht throom",
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+    "knw-920c891f-bb8c-48c4-9afc-018ef12dcdc4",
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+  {
+   "id": "q36",
+   "category": "superseded",
+   "query": "is the self-improvement architecture called DARMA or DHARMA",
+   "returned": [
+    "7?e?7???\f3?",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
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+  {
+   "id": "q37",
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+   "query": "how many provisional patents does Will actually have",
+   "returned": [
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+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
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+ ]
+}

tools/retrieval-eval/results-bm25lex-r2.json

@@ -0,0 +1,959 @@
+{
+ "label": "bm25lex-r2",
+ "soul_binary": "/private/tmp/claude-501/-Users-timlingo/82369039-a20e-4b5a-8a5e-28234a57b996/scratchpad/soul-bm25lex",
+ "soul_md5": "dfbd0f8e3646212db5c60026f8ad906f",
+ "corpus": "/Users/timlingo/neuron-eval-corpora/snapshot-pre-repair-20260806-embedded.json",
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+ "gold_set": "/Users/timlingo/Development/neuron-technologies/_wt-eval/tools/retrieval-eval/gold_set.json",
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+  {
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+    "bl-7e7c3fdb-4132-487f-aa70-b2cd559cb7f0",
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+  {
+   "id": "q08",
+   "category": "phrase",
+   "query": "thirty moves",
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+    "knw-7902acca-604e-409b-8faf-ad85424211d0",
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+   "id": "q09",
+   "category": "phrase",
+   "query": "Grandma Lucas",
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+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
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+  {
+   "id": "q10",
+   "category": "phrase",
+   "query": "Directed Harmonic",
+   "returned": [
+    "bl-dcee1887-34c4-4ffa-9119-1e291685ba08",
+    "project-harmonic-framework",
+    "bl-798d135f-3987-4ccd-8de6-70ca2f358337",
+    "mem-7eeacad7-d7c2-4c2b-8348-19a59aa6dbaf",
+    "project-harmonic-framework_com",
+    "bl-680b24a9-edc3-4a9d-847a-bff0b46b568c",
+    "tag-harmonic-design",
+    "bl-92acd4eb-0452-4e8e-9f54-f8cd35170d76",
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+  {
+   "id": "q11",
+   "category": "phrase",
+   "query": "Sarah Bishop",
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+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "766de879-f9d0-4a07-b6df-b43ee13763d8",
+    "015644f5-8194-4af0-800d-dd4a0cd71396",
+    "tag-sarah",
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+  {
+   "id": "q12",
+   "category": "phrase",
+   "query": "Directed Autonomous Runtime Modification",
+   "returned": [
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+   "id": "q13",
+   "category": "phrase",
+   "query": "zero-knowledge encrypted backup",
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+    "8f3abb0d-77ed-4af3-9f4d-ba62cd198886",
+    "7774a16c-1027-4e3b-a21e-67f1f95a4acd",
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+  {
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+   "category": "paraphrase",
+   "query": "the elderly relative who passed while he stayed away",
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+   "id": "q15",
+   "category": "paraphrase",
+   "query": "a soldier sidelined by illness who refused to quit",
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+  {
+   "id": "q16",
+   "category": "paraphrase",
+   "query": "choosing an uncomfortable fact over a pleasant fiction",
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+    "kn-13f60407-7b70-4db1-964f-ea1f8196efbd",
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+  {
+   "id": "q17",
+   "category": "paraphrase",
+   "query": "a tight payload beats a bloated one",
+   "returned": [
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+    "bl-798d135f-3987-4ccd-8de6-70ca2f358337",
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+  {
+   "id": "q18",
+   "category": "paraphrase",
+   "query": "if you are able and nobody is coming the job is yours",
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+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
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+  {
+   "id": "q19",
+   "category": "paraphrase",
+   "query": "learning is the wealth creditors cannot seize",
+   "returned": [
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+  {
+   "id": "q20",
+   "category": "paraphrase",
+   "query": "reliability proven by track record not assertion",
+   "returned": [
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+    "kn-5de5a9ac-fd15-45ab-bf18-77566781cf40",
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+   "query": "boundaries that enable instead of confine",
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+    "kn-a5b3d0ac-f6a1-49a4-aebb-b8b4cd67fe83",
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+    "project-Source_kn-6f248a50__Add_containment_rules__convergence__location-independence__failure_modes_",
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+   "id": "q22",
+   "category": "paraphrase",
+   "query": "what shifts tells you where to cut a system apart",
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+   "category": "paraphrase",
+   "query": "a mind that compounds instead of resetting each day",
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+   "id": "q24",
+   "category": "paraphrase",
+   "query": "loved for the unedited self and not the polished exterior",
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+  },
+  {
+   "id": "q25",
+   "category": "paraphrase",
+   "query": "cheerfulness you arrive at instead of assuming",
+   "returned": [
+    "mem-82158b02-a180-435d-84f0-0b7ce37511b4",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "e4f27651-52c5-43fd-aff3-61d31685b3cd",
+    "kn-5de5a9ac-fd15-45ab-bf18-77566781cf40",
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+    "mem-833dbbcd-2400-4594-bb35-93b023049ac0",
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+    "mem-759e78ca-5394-4244-aa39-1c1468bc5f3e",
+    "kn-13f60407-7b70-4db1-964f-ea1f8196efbd"
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+  },
+  {
+   "id": "q26",
+   "category": "paraphrase",
+   "query": "a childhood offering no solid foundation to inherit",
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+    "bl-3f57bc69-7285-4f4a-a861-2de52efca058",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
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+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
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+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "kn-5b606390-a52d-4ca2-8e0e-eba141d13440",
+    "tag-childhood"
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+  },
+  {
+   "id": "q27",
+   "category": "associative",
+   "query": "Grandma Lucas stroke February 2006 goodbye window",
+   "returned": [
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "bl-33ecccc2-e37f-43db-91b3-c2a86f08aaac",
+    "kn-0bb4f021-56de-4947-a35b-a37209e7ba21",
+    "766de879-f9d0-4a07-b6df-b43ee13763d8",
+    "kn-e0423482-cfa5-4796-8689-8495c93b66bc",
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+    "kn-78db5396-3dbc-4481-bfc7-e4e1422feb1c"
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+   "mrr@10": 0.5
+  },
+  {
+   "id": "q28",
+   "category": "associative",
+   "query": "Marines hernia sepsis medical ward",
+   "returned": [
+    "bl-33ecccc2-e37f-43db-91b3-c2a86f08aaac",
+    "54608b69-78b6-4239-b60f-b8206cfecacc",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "mem-9110798f-d0cb-4446-bc2a-14f09b6a09e2",
+    "015644f5-8194-4af0-800d-dd4a0cd71396",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71"
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+   "mrr@10": 0.25
+  },
+  {
+   "id": "q29",
+   "category": "associative",
+   "query": "Sarah Bishop Dyer trailer performance",
+   "returned": [
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "766de879-f9d0-4a07-b6df-b43ee13763d8",
+    "015644f5-8194-4af0-800d-dd4a0cd71396",
+    "tag-trailer-park-paladins",
+    "kn-5de5a9ac-fd15-45ab-bf18-77566781cf40",
+    "project-trailer-park-paladins",
+    "kn-78db5396-3dbc-4481-bfc7-e4e1422feb1c"
+   ],
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+   "mrr@10": 0.5
+  },
+  {
+   "id": "q30",
+   "category": "associative",
+   "query": "Swarm Architecture containment lateral worker",
+   "returned": [
+    "bl-0fac287f-f4c0-4f15-bc4d-ff7f8a7af3ae",
+    "bl-9bde67c1-f0ba-4c3a-8fe5-de0deee0ce43",
+    "bl-2515d870-e35e-443b-ba20-5150bbc73fed",
+    "kn-a5b3d0ac-f6a1-49a4-aebb-b8b4cd67fe83",
+    "kn-b36902cc-0b05-44ba-9aa7-800e5dea9ca9",
+    "bl-bea7473c-c687-414c-9c0b-00c509a616c1",
+    "bl-fc6fcb0b-9e4b-40bf-8e88-dbfe4e27c31a",
+    "kn-6f248a50-355b-47bb-aec8-e0e646a9b077",
+    "kn-6061318f-046b-4935-907d-8eafdce14930",
+    "mem-ab34c2f7-3243-424b-affa-25555f6cf9cc"
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q31",
+   "category": "associative",
+   "query": "hope won inside the narrative preface",
+   "returned": [
+    "kn-e0423482-cfa5-4796-8689-8495c93b66bc",
+    "knw-e94982a2-358d-4f2f-af31-8ee0fcec07c6",
+    "bl-2b00aeb0-c0fa-4a9f-8f30-4207e98b3d52",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "kn-5b606390-a52d-4ca2-8e0e-eba141d13440",
+    "knw-4aebd815-4eaf-49d7-954b-03595f3d48be",
+    "knw-723551f5-1950-42a3-8b89-b6a06913cef0",
+    "tag-hope",
+    "knw-d357b6bb-ad8a-4791-b516-426aea45fa5b",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e"
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+   "mrr@10": 0.25
+  },
+  {
+   "id": "q32",
+   "category": "associative",
+   "query": "man of the house six years old expectation",
+   "returned": [
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "knw-729fc901-8335-44c4-9f3a-b150b4aa0915",
+    "knw-d357b6bb-ad8a-4791-b516-426aea45fa5b",
+    "knw-528dbc37-eabc-4b75-a7a5-65bf38d6018a",
+    "knw-35940684-abc4-42f0-b942-818f66b1f69a",
+    "knw-473f3f24-20f6-4f39-8589-3709538eb6ac",
+    "?Z?<S???K ?",
+    "knw-7902acca-604e-409b-8faf-ad85424211d0",
+    "'?T?a\"B~-?8",
+    "kn-6061318f-046b-4935-907d-8eafdce14930"
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+  },
+  {
+   "id": "q33",
+   "category": "nonsense",
+   "query": "zqxjvw plimforth grebulon",
+   "returned": [],
+   "n_returned": 0,
+   "latency_ms": 703.0,
+   "error": null,
+   "clean": true,
+   "false_positives": 0
+  },
+  {
+   "id": "q34",
+   "category": "nonsense",
+   "query": "flarnbistle quommetry",
+   "returned": [],
+   "n_returned": 0,
+   "latency_ms": 492.9,
+   "error": null,
+   "clean": true,
+   "false_positives": 0
+  },
+  {
+   "id": "q35",
+   "category": "nonsense",
+   "query": "xxqzzt vurblenacht throom",
+   "returned": [
+    "bl-4476e856-c567-4b49-8ff7-d7dca3e5715e",
+    "?V?",
+    "knw-6b48dce2-f21c-452a-9db5-4e6aa61c87ca",
+    "knw-920c891f-bb8c-48c4-9afc-018ef12dcdc4",
+    "?m?\\}Q??6??",
+    "8cbb60c5-4999-4ec1-8682-2592aedc4249",
+    "kn-66a21179-2adc-4b19-a109-880cf4674d7d",
+    "?m?\\}Q??6??",
+    "knw-723551f5-1950-42a3-8b89-b6a06913cef0",
+    "kn-333542cb-6dab-4662-9725-bf7440d28bf7"
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+   "clean": false,
+   "false_positives": 10
+  },
+  {
+   "id": "q36",
+   "category": "superseded",
+   "query": "is the self-improvement architecture called DARMA or DHARMA",
+   "returned": [
+    "mem-f3b37427-b7d1-4f7e-b32c-0241a20ce8da",
+    "mem-80d7416b-20e9-48a0-b176-b215527e2f56",
+    "tag-__darma____cgi____patents____self-improvement____character-preservation____autonomous____architecture__",
+    "kn-b7e98d63-8b83-4911-b4d0-990602a7f575",
+    "tag-__darma____cgi____patents____self-improvement____character-preservation____autonomous____kotlin____architecture__",
+    "knw-e047bb42-dc5b-4383-9e88-e508dc03abe3",
+    "mem-e6327f52-2bda-4ce7-9471-2fffd1e172de",
+    "bl-5b17bd3b-0c41-46cb-a710-6fa4429692ff",
+    "mem-82b93b21-a865-410f-9ec1-fc54121d9bb5",
+    "bl-145a0985-2382-400f-a7c5-c335c5e30a72"
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+  },
+  {
+   "id": "q37",
+   "category": "superseded",
+   "query": "how many provisional patents does Will actually have",
+   "returned": [
+    "mem-6f0b2b45-90c1-4356-ac01-3daac05b09c8",
+    "12082f7e-e320-438b-bd65-083d8259748f",
+    "015644f5-8194-4af0-800d-dd4a0cd71396",
+    "13705072-4515-4124-963d-083af490494f",
+    "527ecb25-2587-47eb-8269-73be2431abd4",
+    "6de314bf-5c4c-4cfc-871f-fa2e422d45e6",
+    "a1000001-0000-0000-0000-000000000002",
+    "3cf706a1-3825-45d8-b0a9-06cae6cdf5b8",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "7ac62daa-2eac-4c7a-a97e-e4203fc1b57b"
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+  },
+  {
+   "id": "q38",
+   "category": "superseded",
+   "query": "is MCP still the live integration layer",
+   "returned": [
+    "5fcba804-eb5b-48ec-82da-146b1c6bb50d",
+    "bl-7328cbe3-0200-43c2-88e7-0a164e15fca4",
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+    "bl-c5c6571e-118f-47c7-8cbb-3ed0ebf64a51",
+    "mem-101e81b4-8097-4749-8d8d-7bb66de34517",
+    "ctx-3a55",
+    "86228228-7adf-41fb-b4c4-9ceea87953ae",
+    "4509ed62-9fb2-48b8-9038-ac569fca9604",
+    "bl-4f7b651b-6b33-449c-8a3b-cfce12ce984b",
+    "mem-3a2cf162-d93b-4f29-86f2-5066fb7fe1f5"
+   ],
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+   "outranks": false,
+   "rank_correct": null,
+   "rank_stale": 5
+  }
+ ]
+}

tools/retrieval-eval/results-bm25lex.json

@@ -0,0 +1,959 @@
+{
+ "label": "bm25lex",
+ "soul_binary": "/private/tmp/claude-501/-Users-timlingo/82369039-a20e-4b5a-8a5e-28234a57b996/scratchpad/soul-bm25lex",
+ "soul_md5": "dfbd0f8e3646212db5c60026f8ad906f",
+ "corpus": "/Users/timlingo/neuron-eval-corpora/snapshot-pre-repair-20260806-embedded.json",
+ "corpus_nodes": 78768,
+ "corpus_edges": 14214,
+ "gold_set": "/Users/timlingo/Development/neuron-technologies/_wt-eval/tools/retrieval-eval/gold_set.json",
+ "limit": 10,
+ "port": 7893,
+ "wall_clock_s": 50.4,
+ "child_pid": 90325,
+ "child_confirmed_dead": true,
+ "aggregate": {
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+  "nonsense_clean": "2/3",
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+   }
+  }
+ },
+ "rows": [
+  {
+   "id": "q01",
+   "category": "exact_rare",
+   "query": "unjailbreakable",
+   "returned": [
+    "mem-7f61beb4-271c-4feb-9f6e-1c9c837a6226"
+   ],
+   "n_returned": 1,
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+   "precision@5": 0.2,
+   "mrr@10": 1.0
+  },
+  {
+   "id": "q02",
+   "category": "exact_rare",
+   "query": "engram-migrate",
+   "returned": [
+    "mem-6fdf6545-5e1a-43a9-8bdc-d2cd248146a5",
+    "bl-ba764d70-e9d7-4f62-848f-719cb665f45e",
+    "mem-22fe5ec8-ae0d-4583-a05c-d1ef50353257",
+    "bl-b28d7256-6f74-4567-bd90-40d0ef2a6d78",
+    "project-engram",
+    "ctx-45bc",
+    "project-engram-lang",
+    "ctx-175f",
+    "mem-60778715-758c-4677-933d-fc39b8f94152",
+    "ctx-74ed"
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+   "mrr@10": 1.0
+  },
+  {
+   "id": "q03",
+   "category": "exact_rare",
+   "query": "cartabandonedevent",
+   "returned": [
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+   "mrr@10": 1.0
+  },
+  {
+   "id": "q04",
+   "category": "exact_rare",
+   "query": "pre-apprenticeship",
+   "returned": [
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+   "mrr@10": 1.0
+  },
+  {
+   "id": "q05",
+   "category": "exact_rare",
+   "query": "inferencenodemanager",
+   "returned": [
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+    "bl-c1765767-3e27-449a-8c94-10411d1eb7c0",
+    "project-Add_inference_url_config_to_Neuron_MCP__Route_summarization_gen_tasks_to_Pantheon__keep_frontier_for_complex_reasoning_"
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+  {
+   "id": "q06",
+   "category": "exact_rare",
+   "query": "clear-eyed",
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+  {
+   "id": "q07",
+   "category": "phrase",
+   "query": "patterns not returns",
+   "returned": [
+    "tag-patterns",
+    "mem-a4a9dfc3-e40b-49b3-b1e1-060e8be2f482",
+    "project-Imprint__system_design__ADRs__tech_strategy__integration_patterns__governance_",
+    "project-Imprint__analysis_patterns__data_storytelling__SQL__dashboards__insight_framing_",
+    "bl-79028eed-c330-4724-9402-734062d13503",
+    "bl-39dad13d-7105-4049-8224-dc3c34fdb1f3",
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+  {
+   "id": "q08",
+   "category": "phrase",
+   "query": "thirty moves",
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+    "knw-7902acca-604e-409b-8faf-ad85424211d0",
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+   "id": "q09",
+   "category": "phrase",
+   "query": "Grandma Lucas",
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+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
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+  {
+   "id": "q10",
+   "category": "phrase",
+   "query": "Directed Harmonic",
+   "returned": [
+    "bl-dcee1887-34c4-4ffa-9119-1e291685ba08",
+    "project-harmonic-framework",
+    "bl-798d135f-3987-4ccd-8de6-70ca2f358337",
+    "mem-7eeacad7-d7c2-4c2b-8348-19a59aa6dbaf",
+    "project-harmonic-framework_com",
+    "bl-680b24a9-edc3-4a9d-847a-bff0b46b568c",
+    "tag-harmonic-design",
+    "bl-92acd4eb-0452-4e8e-9f54-f8cd35170d76",
+    "tag-harmonic-framework",
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+  {
+   "id": "q11",
+   "category": "phrase",
+   "query": "Sarah Bishop",
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+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "766de879-f9d0-4a07-b6df-b43ee13763d8",
+    "015644f5-8194-4af0-800d-dd4a0cd71396",
+    "tag-sarah",
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+  {
+   "id": "q12",
+   "category": "phrase",
+   "query": "Directed Autonomous Runtime Modification",
+   "returned": [
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+    "bl-31abf75b-998f-4a4f-a6dd-8204119e0451",
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+   "id": "q13",
+   "category": "phrase",
+   "query": "zero-knowledge encrypted backup",
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+    "8f3abb0d-77ed-4af3-9f4d-ba62cd198886",
+    "7774a16c-1027-4e3b-a21e-67f1f95a4acd",
+    "?",
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+    "?",
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+  {
+   "id": "q14",
+   "category": "paraphrase",
+   "query": "the elderly relative who passed while he stayed away",
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+  {
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+   "category": "paraphrase",
+   "query": "a soldier sidelined by illness who refused to quit",
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+  {
+   "id": "q16",
+   "category": "paraphrase",
+   "query": "choosing an uncomfortable fact over a pleasant fiction",
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+    "kn-13f60407-7b70-4db1-964f-ea1f8196efbd",
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+    "tag-fiction",
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+  {
+   "id": "q17",
+   "category": "paraphrase",
+   "query": "a tight payload beats a bloated one",
+   "returned": [
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+    "bl-798d135f-3987-4ccd-8de6-70ca2f358337",
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+  {
+   "id": "q18",
+   "category": "paraphrase",
+   "query": "if you are able and nobody is coming the job is yours",
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+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "a1000001-0000-0000-0000-000000000010",
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+    "a1000001-0000-0000-0000-000000000012",
+    "43098881-e044-482b-8e92-471728a8ba8b",
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+  {
+   "id": "q19",
+   "category": "paraphrase",
+   "query": "learning is the wealth creditors cannot seize",
+   "returned": [
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+    "knw-7902acca-604e-409b-8faf-ad85424211d0",
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+  {
+   "id": "q20",
+   "category": "paraphrase",
+   "query": "reliability proven by track record not assertion",
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+    "kn-5de5a9ac-fd15-45ab-bf18-77566781cf40",
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+   "query": "boundaries that enable instead of confine",
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+    "kn-a5b3d0ac-f6a1-49a4-aebb-b8b4cd67fe83",
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+  {
+   "id": "q22",
+   "category": "paraphrase",
+   "query": "what shifts tells you where to cut a system apart",
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+  {
+   "id": "q23",
+   "category": "paraphrase",
+   "query": "a mind that compounds instead of resetting each day",
+   "returned": [
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+   "id": "q24",
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+   "id": "q25",
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+  {
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+   "query": "Sarah Bishop Dyer trailer performance",
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+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
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+    "tag-trailer-park-paladins",
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+    "project-trailer-park-paladins",
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+  {
+   "id": "q30",
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+   "query": "Swarm Architecture containment lateral worker",
+   "returned": [
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+    "bl-9bde67c1-f0ba-4c3a-8fe5-de0deee0ce43",
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+    "knw-729fc901-8335-44c4-9f3a-b150b4aa0915",
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+    "knw-473f3f24-20f6-4f39-8589-3709538eb6ac",
+    "?Z?<S???K ?",
+    "knw-7902acca-604e-409b-8faf-ad85424211d0",
+    "'?T?a\"B~-?8",
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+  {
+   "id": "q33",
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+  },
+  {
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+   "query": "flarnbistle quommetry",
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+   "false_positives": 0
+  },
+  {
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+   "query": "xxqzzt vurblenacht throom",
+   "returned": [
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+    "?V?",
+    "knw-6b48dce2-f21c-452a-9db5-4e6aa61c87ca",
+    "knw-920c891f-bb8c-48c4-9afc-018ef12dcdc4",
+    "?m?\\}Q??6??",
+    "8cbb60c5-4999-4ec1-8682-2592aedc4249",
+    "kn-66a21179-2adc-4b19-a109-880cf4674d7d",
+    "?m?\\}Q??6??",
+    "knw-723551f5-1950-42a3-8b89-b6a06913cef0",
+    "kn-333542cb-6dab-4662-9725-bf7440d28bf7"
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+  {
+   "id": "q36",
+   "category": "superseded",
+   "query": "is the self-improvement architecture called DARMA or DHARMA",
+   "returned": [
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+    "mem-80d7416b-20e9-48a0-b176-b215527e2f56",
+    "tag-__darma____cgi____patents____self-improvement____character-preservation____autonomous____architecture__",
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+  {
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+   "query": "how many provisional patents does Will actually have",
+   "returned": [
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+    "12082f7e-e320-438b-bd65-083d8259748f",
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+   "query": "is MCP still the live integration layer",
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+    "bl-7328cbe3-0200-43c2-88e7-0a164e15fca4",
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+ ]
+}

tools/retrieval-eval/results-feat-recall-through-activation.json

@@ -0,0 +1,942 @@
+{
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+ "rows": [
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+   "id": "q04",
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+   "id": "q05",
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+   "id": "q06",
+   "category": "exact_rare",
+   "query": "clear-eyed",
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+   "id": "q07",
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+   "query": "patterns not returns",
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+   "id": "q08",
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+    "?Z?.\f?0?]P?",
+    "?Q??m?;��`'"
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+  {
+   "id": "q09",
+   "category": "phrase",
+   "query": "Grandma Lucas",
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+    "? ?}&?#??X\b",
+    "art-0f0277a1-4a8e-4645-95dd-fa379976f31c",
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+  {
+   "id": "q10",
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+   "query": "Directed Harmonic",
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+    "? ?}&?#??X\b",
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+   "id": "q11",
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+   "query": "Sarah Bishop",
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+  },
+  {
+   "id": "q12",
+   "category": "phrase",
+   "query": "Directed Autonomous Runtime Modification",
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+    "mem-46780047-63a0-4a86-a16b-638b72a7fb8d",
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+    "mem-f823e835-313f-4282-b4b3-ce527ffc2f7a",
+    "? ?}&?#??X\b",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "?Z?.\f?0?]P?",
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+  {
+   "id": "q13",
+   "category": "phrase",
+   "query": "zero-knowledge encrypted backup",
+   "returned": [
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+    "bl-e20944e5-eb16-4ab3-a84d-111e0fc817fa",
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+    "7774a16c-1027-4e3b-a21e-67f1f95a4acd",
+    "? ?}&?#??X\b",
+    "7?e?7???\f3?",
+    "deda48cd-5e1a-46cb-bd43-8016afdb3a8a"
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+  },
+  {
+   "id": "q14",
+   "category": "paraphrase",
+   "query": "the elderly relative who passed while he stayed away",
+   "returned": [
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+    "mem-ea487cb4-ed67-44ce-8402-b56bb28468d4",
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+    "art-0f0277a1-4a8e-4645-95dd-fa379976f31c",
+    "? ?}&?#??X\b",
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+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad"
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+  },
+  {
+   "id": "q15",
+   "category": "paraphrase",
+   "query": "a soldier sidelined by illness who refused to quit",
+   "returned": [
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+    "bl-07375bf9-a169-42cd-adb3-7d32b25982f0",
+    "bl-fd047ce9-ae21-4b3e-b3ab-ece0c9592f7f",
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+    "bl-6172d035-dd94-4776-afdd-d8915f6fc375",
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+    "art-0f0277a1-4a8e-4645-95dd-fa379976f31c",
+    "art-80ca3d31-84dc-4502-83f4-538372b9764f",
+    "015644f5-8194-4af0-800d-dd4a0cd71396"
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+  },
+  {
+   "id": "q16",
+   "category": "paraphrase",
+   "query": "choosing an uncomfortable fact over a pleasant fiction",
+   "returned": [
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+    "bl-fc893be3-e6b4-4ef6-93b0-d54ca5f89083",
+    "tag-project-structure",
+    "tag-anthropic-contrast",
+    "tag-voice-training",
+    "tag-ebd",
+    "art-80ca3d31-84dc-4502-83f4-538372b9764f",
+    "015644f5-8194-4af0-800d-dd4a0cd71396",
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+  },
+  {
+   "id": "q17",
+   "category": "paraphrase",
+   "query": "a tight payload beats a bloated one",
+   "returned": [
+    "bl-d24fcce8-2b55-426f-867a-db3958a622d3",
+    "tag-phase-3",
+    "tag-identity-studio",
+    "tag-kids",
+    "tag-coexistence",
+    "tag-cultivated-general-intelligence",
+    "015644f5-8194-4af0-800d-dd4a0cd71396",
+    "? ?}&?#??X\b",
+    "kn-9397c74b-35f3-4428-b4b0-5123353bbcd1",
+    "mem-cdff0c49-3ac7-4de8-89ec-92d254bd0023"
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+  },
+  {
+   "id": "q18",
+   "category": "paraphrase",
+   "query": "if you are able and nobody is coming the job is yours",
+   "returned": [
+    "knw-7902acca-604e-409b-8faf-ad85424211d0",
+    "bl-bd9fb314-e9d4-4b03-aef4-534dd57a2992",
+    "bl-b019ce7a-1b21-436e-812d-032f50c6c45f",
+    "bl-e98cdd4c-01b5-459e-9036-3578cd5d975a",
+    "bl-9ce4128a-9436-4b06-82bc-8a6faafa81e0",
+    "tag-stable-diffusion",
+    "art-0f0277a1-4a8e-4645-95dd-fa379976f31c",
+    "art-80ca3d31-84dc-4502-83f4-538372b9764f",
+    "015644f5-8194-4af0-800d-dd4a0cd71396",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd"
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+  },
+  {
+   "id": "q19",
+   "category": "paraphrase",
+   "query": "learning is the wealth creditors cannot seize",
+   "returned": [
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+    "mem-e32ba5a7-c147-4dc0-9479-b720d768eda6",
+    "mem-c7a77457-478d-4eb0-a116-67205a0066a4",
+    "bl-1b20e9bc-eb37-4907-8d63-e311fd61eab8",
+    "bl-aa762207-920d-45ab-b2a3-2f8154d7ef9b",
+    "tag-misalignment",
+    "art-0f0277a1-4a8e-4645-95dd-fa379976f31c",
+    "015644f5-8194-4af0-800d-dd4a0cd71396",
+    "? ?}&?#??X\b",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3"
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q20",
+   "category": "paraphrase",
+   "query": "reliability proven by track record not assertion",
+   "returned": [
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+    "bl-7f33f1bc-99fa-4906-889f-a42375beea20",
+    "mem-6f0b2b45-90c1-4356-ac01-3daac05b09c8",
+    "mem-ce5a2ffc-ad39-4728-9ac6-76fef507d5da",
+    "project-Stripe_Elements__not_hosted_checkout__Custom_URL__DAG_bundle_pricing__Stripe_Connect_80_20_",
+    "tag-provenance",
+    "? ?}&?#??X\b",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "art-2f29ad36-6ee6-4a0e-8d72-0eaf7d12d3a9",
+    "art-e495c8c5-ad95-4b64-8771-f68aa4cfcd0a"
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q21",
+   "category": "paraphrase",
+   "query": "boundaries that enable instead of confine",
+   "returned": [
+    "kn-79056192-7de8-486c-9565-f128439a6fcb",
+    "bl-f6236350-f7b8-4f4f-a702-9eef2eb76e4b",
+    "mem-ef0091d8-1b65-431e-afa8-c6c4ee5779c9",
+    "mem-37b57f52-a29a-42cf-a07a-3c5f8a3598dd",
+    "mem-1f32f73a-952c-41bc-96dc-8b8b70d8a7c1",
+    "tag-__cultivation-metric____internal-state____dharma____evidence____novel-idea____gap-compression____values____microsoft__",
+    "? ?}&?#??X\b",
+    "kn-9397c74b-35f3-4428-b4b0-5123353bbcd1",
+    "art-80ca3d31-84dc-4502-83f4-538372b9764f",
+    "015644f5-8194-4af0-800d-dd4a0cd71396"
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+  },
+  {
+   "id": "q22",
+   "category": "paraphrase",
+   "query": "what shifts tells you where to cut a system apart",
+   "returned": [
+    "knw-723551f5-1950-42a3-8b89-b6a06913cef0",
+    "bl-57c5cf6b-81a5-4558-9902-5c02981fe273",
+    "tag-guilds",
+    "tag-finance",
+    "tag-temporal",
+    "tag-barkhausen",
+    "tag-ilogger",
+    "015644f5-8194-4af0-800d-dd4a0cd71396",
+    "kn-9397c74b-35f3-4428-b4b0-5123353bbcd1",
+    "art-0f0277a1-4a8e-4645-95dd-fa379976f31c"
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+  },
+  {
+   "id": "q23",
+   "category": "paraphrase",
+   "query": "a mind that compounds instead of resetting each day",
+   "returned": [
+    "project-Goal_setting__alignment__scoring__cadence__Attaches_to_any_imprint_",
+    "tag-turing-test",
+    "tag-sealed",
+    "tag-design-first",
+    "tag-part-5",
+    "tag-model",
+    "art-80ca3d31-84dc-4502-83f4-538372b9764f",
+    "015644f5-8194-4af0-800d-dd4a0cd71396",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd",
+    "? ?}&?#??X\b"
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q24",
+   "category": "paraphrase",
+   "query": "loved for the unedited self and not the polished exterior",
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+  },
+  {
+   "id": "q26",
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+   "query": "a childhood offering no solid foundation to inherit",
+   "returned": [
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+    "tag-storage",
+    "tag-ga4",
+    "tag-potions",
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+  },
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+    "bl-4476e856-c567-4b49-8ff7-d7dca3e5715e",
+    "tag-upload-window",
+    "? ?}&?#??X\b",
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+  },
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+  },
+  {
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+    "project-Imprint__leadership_development__feedback_frameworks__performance__presence_",
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+    "mem-89c02aae-d3ca-43f9-9e5d-eb369896276c",
+    "tag-sarah",
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+    "? ?}&?#??X\b",
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q30",
+   "category": "associative",
+   "query": "Swarm Architecture containment lateral worker",
+   "returned": [
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+    "mem-9d1bf963-1b40-4588-bdb3-0432646cc623",
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+    "bl-e0a0df72-de6e-46ab-800b-e1e3e8dfc387",
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+    "? ?}&?#??X\b",
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+    "7?e?7???\f3?",
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+   "query": "hope won inside the narrative preface",
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+  },
+  {
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+    "bl-4a6746e8-191f-48fc-8bfb-c4dc73b80bcd",
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+  },
+  {
+   "id": "q33",
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+   "query": "zqxjvw plimforth grebulon",
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+   "error": null,
+   "clean": true,
+   "false_positives": 0
+  },
+  {
+   "id": "q34",
+   "category": "nonsense",
+   "query": "flarnbistle quommetry",
+   "returned": [],
+   "n_returned": 0,
+   "latency_ms": 874.8,
+   "error": null,
+   "clean": true,
+   "false_positives": 0
+  },
+  {
+   "id": "q35",
+   "category": "nonsense",
+   "query": "xxqzzt vurblenacht throom",
+   "returned": [
+    "kn-333542cb-6dab-4662-9725-bf7440d28bf7",
+    "? ?}&?#??X\b",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd",
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+   "false_positives": 8
+  },
+  {
+   "id": "q36",
+   "category": "superseded",
+   "query": "is the self-improvement architecture called DARMA or DHARMA",
+   "returned": [
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+    "project-worldweaver",
+    "tag-__kotlin____internal-state____pre-reasoning____post-reasoning____compression-ratio____dharma____cultivation__",
+    "tag-import",
+    "tag-enterprise",
+    "tag-__cgi____dharma____cultivation____five-primitives____seed-artifact____agi____intelligence____whitepaper____patent__",
+    "art-80ca3d31-84dc-4502-83f4-538372b9764f",
+    "? ?}&?#??X\b",
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+    "015644f5-8194-4af0-800d-dd4a0cd71396"
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+  {
+   "id": "q37",
+   "category": "superseded",
+   "query": "how many provisional patents does Will actually have",
+   "returned": [
+    "mem-bfe0fafd-2750-4fdc-b773-04e878b3b23f",
+    "art-7bdaff30-5af9-4f0a-93b1-751686f9de3d",
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+    "mem-22f5f665-3ad2-4063-88b0-915849a795f5",
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+    "bl-8116da7a-b039-4e08-b8d0-c1c7861f9766",
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+    "tag-dark-theme",
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+ ]
+}

tools/retrieval-eval/results-hybrid-r2.json

@@ -0,0 +1,956 @@
+{
+ "label": "hybrid-semantic-r2",
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+ "soul_md5": "5cd2718932c2ecf4940ddfe5a9c8abbe",
+ "corpus": "/private/tmp/claude-501/-Users-timlingo/82369039-a20e-4b5a-8a5e-28234a57b996/scratchpad/corpus-embedded.json",
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+ "gold_set": "/Users/timlingo/Development/neuron-technologies/_wt-eval/tools/retrieval-eval/gold_set.json",
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+    "mem-22fe5ec8-ae0d-4583-a05c-d1ef50353257",
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+    "bl-c1765767-3e27-449a-8c94-10411d1eb7c0",
+    "project-Add_inference_url_config_to_Neuron_MCP__Route_summarization_gen_tasks_to_Pantheon__keep_frontier_for_complex_reasoning_"
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+   "category": "exact_rare",
+   "query": "clear-eyed",
+   "returned": [
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+   ],
+   "n_returned": 1,
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+   "precision@5": 0.2,
+   "mrr@10": 1.0
+  },
+  {
+   "id": "q07",
+   "category": "phrase",
+   "query": "patterns not returns",
+   "returned": [
+    "mem-a4a9dfc3-e40b-49b3-b1e1-060e8be2f482",
+    "????7???Ջ3",
+    "015644f5-8194-4af0-800d-dd4a0cd71396",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "?ǚ?7??????",
+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356",
+    "kn-d97920d0-1649-4223-9508-c0bb621e7fc0",
+    "kn-57b4c5e7-40c6-4c90-bf14-71841b0081d4",
+    "art-d24fd6dd-2cda-4eed-92f3-67b535a0d71b",
+    "7?e?7???\f3?"
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+   "mrr@10": 1.0
+  },
+  {
+   "id": "q08",
+   "category": "phrase",
+   "query": "thirty moves",
+   "returned": [
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+    "knw-7902acca-604e-409b-8faf-ad85424211d0",
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+    "knw-f671966c-3387-4848-abca-b5deec122e00",
+    "knw-e94982a2-358d-4f2f-af31-8ee0fcec07c6",
+    "Z[?<S???H??",
+    "rQ??m?;?x?'",
+    "kn-f230b362-b201-4402-9833-4160c89ab3d4",
+    "kn-6061318f-046b-4935-907d-8eafdce14930"
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+  },
+  {
+   "id": "q09",
+   "category": "phrase",
+   "query": "Grandma Lucas",
+   "returned": [
+    "art-0f0277a1-4a8e-4645-95dd-fa379976f31c",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "766de879-f9d0-4a07-b6df-b43ee13763d8",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325"
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+   "mrr@10": 1.0
+  },
+  {
+   "id": "q10",
+   "category": "phrase",
+   "query": "Directed Harmonic",
+   "returned": [
+    "ԍ????X????",
+    "project-harmonic-framework",
+    "?ǚ?7??????",
+    "project-harmonic-framework_com",
+    "knw-e24d6339-5ff3-4bed-ba53-707ffd0dc70a",
+    "??????X??2c",
+    "bl-dcee1887-34c4-4ffa-9119-1e291685ba08",
+    "????7???Ջ3",
+    "mem-7eeacad7-d7c2-4c2b-8348-19a59aa6dbaf",
+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356"
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+   "mrr@10": 0.1111111111111111
+  },
+  {
+   "id": "q11",
+   "category": "phrase",
+   "query": "Sarah Bishop",
+   "returned": [
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd",
+    "? ?}&?#??X\b",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "766de879-f9d0-4a07-b6df-b43ee13763d8",
+    "mem-a9a9ce95-0d64-46eb-9db8-ff81d78ade35",
+    "mem-b8ecd23e-77ce-42f7-984c-f51453fec16d"
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+  },
+  {
+   "id": "q12",
+   "category": "phrase",
+   "query": "Directed Autonomous Runtime Modification",
+   "returned": [
+    "bl-5b17bd3b-0c41-46cb-a710-6fa4429692ff",
+    "mem-e6327f52-2bda-4ce7-9471-2fffd1e172de",
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+    "mem-82b93b21-a865-410f-9ec1-fc54121d9bb5",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "7?e?7???\f3?",
+    "?of?7???",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b"
+   ],
+   "n_returned": 9,
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+  },
+  {
+   "id": "q13",
+   "category": "phrase",
+   "query": "zero-knowledge encrypted backup",
+   "returned": [
+    "7774a16c-1027-4e3b-a21e-67f1f95a4acd",
+    "8f3abb0d-77ed-4af3-9f4d-ba62cd198886",
+    "deda48cd-5e1a-46cb-bd43-8016afdb3a8a",
+    "?",
+    "mem-dba009a2-d2ea-4f5a-b9e8-0f04bc9ab32f",
+    "?",
+    "mem-7cd90611-88a3-423d-a38a-0db2812952fa",
+    "?",
+    "bl-07375bf9-a169-42cd-adb3-7d32b25982f0",
+    "?"
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+  {
+   "id": "q14",
+   "category": "paraphrase",
+   "query": "the elderly relative who passed while he stayed away",
+   "returned": [
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "????7???Ջ3",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "art-0f0277a1-4a8e-4645-95dd-fa379976f31c"
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+  },
+  {
+   "id": "q15",
+   "category": "paraphrase",
+   "query": "a soldier sidelined by illness who refused to quit",
+   "returned": [
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "art-2fabd873-d787-49cb-ad30-d4ed9fcff8ef",
+    "art-2f29ad36-6ee6-4a0e-8d72-0eaf7d12d3a9",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "knw-9e74ee95-ba7d-49b1-9262-977eae9729d1",
+    "kn-a31e1001-342e-4deb-a2e6-6d02d1f22dee",
+    "? ?}&?#??X\b"
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+  {
+   "id": "q16",
+   "category": "paraphrase",
+   "query": "choosing an uncomfortable fact over a pleasant fiction",
+   "returned": [
+    "7?e?7???\f3?",
+    "kn-13f60407-7b70-4db1-964f-ea1f8196efbd",
+    "kn-f8974b26-78a6-4aad-b893-19a73b20013d",
+    "?of?7???",
+    "? ?}&?#??X\b",
+    "????7???Ջ3",
+    "kn-57b4c5e7-40c6-4c90-bf14-71841b0081d4",
+    "kn-d97920d0-1649-4223-9508-c0bb621e7fc0",
+    "knw-9e74ee95-ba7d-49b1-9262-977eae9729d1",
+    "kn-e8423822-eacf-4029-aa7b-10d4d28d621e"
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+  },
+  {
+   "id": "q17",
+   "category": "paraphrase",
+   "query": "a tight payload beats a bloated one",
+   "returned": [
+    "kn-d7c1e0fb-fa59-46d3-b4c9-a0d1d437a491",
+    "7?e?7???\f3?",
+    "kn-9397c74b-35f3-4428-b4b0-5123353bbcd1",
+    "??o?'?B???k",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "kn-e8423822-eacf-4029-aa7b-10d4d28d621e",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b"
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+  },
+  {
+   "id": "q18",
+   "category": "paraphrase",
+   "query": "if you are able and nobody is coming the job is yours",
+   "returned": [
+    "7?e?7???\f3?",
+    "?of?7???",
+    "imp-dce1da0f-8776-4a9e-972b-33411a7ca138",
+    "kn-5b606390-a52d-4ca2-8e0e-eba141d13440",
+    "kn-f8974b26-78a6-4aad-b893-19a73b20013d",
+    "kn-c2205725-69d0-4dd1-9a8d-1c7fa9a0c7b4",
+    "kn-83bb86c6-521d-416c-a86e-6e29c2d8f102",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b"
+   ],
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+  },
+  {
+   "id": "q19",
+   "category": "paraphrase",
+   "query": "learning is the wealth creditors cannot seize",
+   "returned": [
+    "knw-e24d6339-5ff3-4bed-ba53-707ffd0dc70a",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "knw-7902acca-604e-409b-8faf-ad85424211d0",
+    "kn-57b4c5e7-40c6-4c90-bf14-71841b0081d4",
+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356",
+    "7?e?7???\f3?",
+    "kn-0625e393-067c-4bba-8389-7e1b79265142",
+    "??o?'?B???k",
+    "kn-150e6790-fc2a-48a7-8289-313c1fbaf5ae",
+    "? ?}&?#??X\b"
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+  },
+  {
+   "id": "q20",
+   "category": "paraphrase",
+   "query": "reliability proven by track record not assertion",
+   "returned": [
+    "? ?}&?#??X\b",
+    "kn-5de5a9ac-fd15-45ab-bf18-77566781cf40",
+    "? ?}&?#??X\b",
+    "knw-f671966c-3387-4848-abca-b5deec122e00",
+    "? ?}&?#??X\b",
+    "a708dd6e-fe73-4f2f-a21e-89daa0985487",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "7?e?7???\f3?"
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+   "mrr@10": 0.5
+  },
+  {
+   "id": "q21",
+   "category": "paraphrase",
+   "query": "boundaries that enable instead of confine",
+   "returned": [
+    "? ?}&?#??X\b",
+    "kn-a5b3d0ac-f6a1-49a4-aebb-b8b4cd67fe83",
+    "? ?}&?#??X\b",
+    "project-Source_kn-6f248a50__Add_containment_rules__convergence__location-independence__failure_modes_",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356",
+    "ԍ????X????",
+    "??????X??2c",
+    "dR????X?-?S"
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+   "n_returned": 10,
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+  },
+  {
+   "id": "q22",
+   "category": "paraphrase",
+   "query": "what shifts tells you where to cut a system apart",
+   "returned": [
+    "7?e?7???\f3?",
+    "kn-9397c74b-35f3-4428-b4b0-5123353bbcd1",
+    "knw-9e74ee95-ba7d-49b1-9262-977eae9729d1",
+    "kn-f8974b26-78a6-4aad-b893-19a73b20013d",
+    "?of?7???",
+    "??????X??2c",
+    "dz????Xƹ?i",
+    "ԍ????X????",
+    "dR????X?-?S",
+    "kn-d7c1e0fb-fa59-46d3-b4c9-a0d1d437a491"
+   ],
+   "n_returned": 10,
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+  },
+  {
+   "id": "q23",
+   "category": "paraphrase",
+   "query": "a mind that compounds instead of resetting each day",
+   "returned": [
+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356",
+    "mem-b43f6ef4-2f5a-418d-b5ce-3f21520cf6b8",
+    "????7???Ջ3",
+    "a1000001-0000-0000-0000-000000000001",
+    "?ǚ?7??????",
+    "mem-024598a9-ed2e-4eeb-b1e1-5410856ff132",
+    "7?e?7???\f3?",
+    "mem-ade9440f-f161-4c18-9b35-1976257e6ebb",
+    "?of?7???",
+    "ea95f600-8dfd-4c7e-b077-a93dc3cd3623"
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+  },
+  {
+   "id": "q24",
+   "category": "paraphrase",
+   "query": "loved for the unedited self and not the polished exterior",
+   "returned": [
+    "mem-bbb126a1-b297-42bb-86be-796871829c94",
+    "mem-45022957-2d78-48aa-a714-16d6eca52e0f",
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "knw-35940684-abc4-42f0-b942-818f66b1f69a",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "art-0f0277a1-4a8e-4645-95dd-fa379976f31c",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd",
+    "7?e?7???\f3?",
+    "? ?}&?#??X\b",
+    "'?T?a\"B~-?8"
+   ],
+   "n_returned": 10,
+   "latency_ms": 1576.3,
+   "error": null,
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q25",
+   "category": "paraphrase",
+   "query": "cheerfulness you arrive at instead of assuming",
+   "returned": [
+    "?ǚ?7??????",
+    "015644f5-8194-4af0-800d-dd4a0cd71396",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "7?e?7???\f3?",
+    "??S?7???",
+    "??f?7???",
+    "kn-e8423822-eacf-4029-aa7b-10d4d28d621e",
+    "??S?7???",
+    "??S?7???",
+    "? ?}&?#??X\b"
+   ],
+   "n_returned": 10,
+   "latency_ms": 1287.2,
+   "error": null,
+   "hit@5": 0.0,
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+   "recall@10": 0.0,
+   "precision@5": 0.0,
+   "mrr@10": 0.0
+  },
+  {
+   "id": "q26",
+   "category": "paraphrase",
+   "query": "a childhood offering no solid foundation to inherit",
+   "returned": [
+    "? ?}&?#??X\b",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "? ?}&?#??X\b",
+    "kn-6061318f-046b-4935-907d-8eafdce14930",
+    "? ?}&?#??X\b",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "kn-0bb4f021-56de-4947-a35b-a37209e7ba21",
+    "7?e?7???\f3?",
+    "mem-7b74cac0-905f-4c35-9688-fbcce105a177"
+   ],
+   "n_returned": 10,
+   "latency_ms": 1391.5,
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+   "precision@5": 0.2,
+   "mrr@10": 0.25
+  },
+  {
+   "id": "q27",
+   "category": "associative",
+   "query": "Grandma Lucas stroke February 2006 goodbye window",
+   "returned": [
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+    "? ?}&?#??X\b",
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+  {
+   "id": "q28",
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+   "query": "Marines hernia sepsis medical ward",
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+  },
+  {
+   "id": "q29",
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+   "query": "Sarah Bishop Dyer trailer performance",
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+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
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+    "? ?}&?#??X\b",
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+  },
+  {
+   "id": "q30",
+   "category": "associative",
+   "query": "Swarm Architecture containment lateral worker",
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+    "bl-9bde67c1-f0ba-4c3a-8fe5-de0deee0ce43",
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+   "query": "hope won inside the narrative preface",
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+  },
+  {
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+   "query": "man of the house six years old expectation",
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+    "? ?}&?#??X\b",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "? ?}&?#??X\b",
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+  },
+  {
+   "id": "q33",
+   "category": "nonsense",
+   "query": "zqxjvw plimforth grebulon",
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+   "n_returned": 0,
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+   "error": null,
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+   "false_positives": 0
+  },
+  {
+   "id": "q34",
+   "category": "nonsense",
+   "query": "flarnbistle quommetry",
+   "returned": [],
+   "n_returned": 0,
+   "latency_ms": 519.6,
+   "error": null,
+   "clean": true,
+   "false_positives": 0
+  },
+  {
+   "id": "q35",
+   "category": "nonsense",
+   "query": "xxqzzt vurblenacht throom",
+   "returned": [
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "?V?",
+    "knw-920c891f-bb8c-48c4-9afc-018ef12dcdc4",
+    "?m?\\}Q??6??",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "?m?\\}Q??6??",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd",
+    "?m?\\}Q??6??",
+    "bl-4476e856-c567-4b49-8ff7-d7dca3e5715e",
+    "?m?\\}Q??6??"
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+   "error": null,
+   "clean": false,
+   "false_positives": 10
+  },
+  {
+   "id": "q36",
+   "category": "superseded",
+   "query": "is the self-improvement architecture called DARMA or DHARMA",
+   "returned": [
+    "7?e?7???\f3?",
+    "mem-80d7416b-20e9-48a0-b176-b215527e2f56",
+    "? ?}&?#??X\b",
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+    "? ?}&?#??X\b",
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+  },
+  {
+   "id": "q37",
+   "category": "superseded",
+   "query": "how many provisional patents does Will actually have",
+   "returned": [
+    "? ?}&?#??X\b",
+    "12082f7e-e320-438b-bd65-083d8259748f",
+    "? ?}&?#??X\b",
+    "527ecb25-2587-47eb-8269-73be2431abd4",
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+    "? ?}&?#??X\b",
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+  {
+   "id": "q38",
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+    "bl-7328cbe3-0200-43c2-88e7-0a164e15fca4",
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+    "%???2??jH??",
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+    "???Ͼd??W\b?",
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+}

tools/retrieval-eval/results-hybrid.json

@@ -0,0 +1,956 @@
+{
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+  {
+   "id": "q10",
+   "category": "phrase",
+   "query": "Directed Harmonic",
+   "returned": [
+    "ԍ????X????",
+    "project-harmonic-framework",
+    "?ǚ?7??????",
+    "project-harmonic-framework_com",
+    "knw-e24d6339-5ff3-4bed-ba53-707ffd0dc70a",
+    "??????X??2c",
+    "bl-dcee1887-34c4-4ffa-9119-1e291685ba08",
+    "????7???Ջ3",
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+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356"
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+   "mrr@10": 0.1111111111111111
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+  {
+   "id": "q11",
+   "category": "phrase",
+   "query": "Sarah Bishop",
+   "returned": [
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+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd",
+    "? ?}&?#??X\b",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "766de879-f9d0-4a07-b6df-b43ee13763d8",
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+    "mem-b8ecd23e-77ce-42f7-984c-f51453fec16d"
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+  },
+  {
+   "id": "q12",
+   "category": "phrase",
+   "query": "Directed Autonomous Runtime Modification",
+   "returned": [
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+    "mem-e6327f52-2bda-4ce7-9471-2fffd1e172de",
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+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
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+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b"
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+  {
+   "id": "q13",
+   "category": "phrase",
+   "query": "zero-knowledge encrypted backup",
+   "returned": [
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+    "8f3abb0d-77ed-4af3-9f4d-ba62cd198886",
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+    "?",
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+    "?",
+    "mem-7cd90611-88a3-423d-a38a-0db2812952fa",
+    "?",
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+   "id": "q14",
+   "category": "paraphrase",
+   "query": "the elderly relative who passed while he stayed away",
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+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
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+    "? ?}&?#??X\b",
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+   "id": "q15",
+   "category": "paraphrase",
+   "query": "a soldier sidelined by illness who refused to quit",
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+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
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+    "knw-9e74ee95-ba7d-49b1-9262-977eae9729d1",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b"
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+  {
+   "id": "q16",
+   "category": "paraphrase",
+   "query": "choosing an uncomfortable fact over a pleasant fiction",
+   "returned": [
+    "7?e?7???\f3?",
+    "kn-13f60407-7b70-4db1-964f-ea1f8196efbd",
+    "kn-f8974b26-78a6-4aad-b893-19a73b20013d",
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+    "kn-57b4c5e7-40c6-4c90-bf14-71841b0081d4",
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+    "kn-e8423822-eacf-4029-aa7b-10d4d28d621e"
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+  {
+   "id": "q17",
+   "category": "paraphrase",
+   "query": "a tight payload beats a bloated one",
+   "returned": [
+    "kn-d7c1e0fb-fa59-46d3-b4c9-a0d1d437a491",
+    "7?e?7???\f3?",
+    "??o?'?B???k",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "kn-e8423822-eacf-4029-aa7b-10d4d28d621e",
+    "? ?}&?#??X\b",
+    "?of?7???",
+    "kn-9397c74b-35f3-4428-b4b0-5123353bbcd1",
+    "? ?}&?#??X\b"
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+  {
+   "id": "q18",
+   "category": "paraphrase",
+   "query": "if you are able and nobody is coming the job is yours",
+   "returned": [
+    "7?e?7???\f3?",
+    "?of?7???",
+    "imp-dce1da0f-8776-4a9e-972b-33411a7ca138",
+    "kn-5b606390-a52d-4ca2-8e0e-eba141d13440",
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+    "kn-c2205725-69d0-4dd1-9a8d-1c7fa9a0c7b4",
+    "kn-83bb86c6-521d-416c-a86e-6e29c2d8f102",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b"
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+  {
+   "id": "q19",
+   "category": "paraphrase",
+   "query": "learning is the wealth creditors cannot seize",
+   "returned": [
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+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
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+    "kn-57b4c5e7-40c6-4c90-bf14-71841b0081d4",
+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356",
+    "7?e?7???\f3?",
+    "kn-0625e393-067c-4bba-8389-7e1b79265142",
+    "??o?'?B???k",
+    "kn-150e6790-fc2a-48a7-8289-313c1fbaf5ae",
+    "? ?}&?#??X\b"
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+  {
+   "id": "q20",
+   "category": "paraphrase",
+   "query": "reliability proven by track record not assertion",
+   "returned": [
+    "? ?}&?#??X\b",
+    "kn-5de5a9ac-fd15-45ab-bf18-77566781cf40",
+    "? ?}&?#??X\b",
+    "knw-f671966c-3387-4848-abca-b5deec122e00",
+    "? ?}&?#??X\b",
+    "a708dd6e-fe73-4f2f-a21e-89daa0985487",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "7?e?7???\f3?"
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+  {
+   "id": "q21",
+   "category": "paraphrase",
+   "query": "boundaries that enable instead of confine",
+   "returned": [
+    "? ?}&?#??X\b",
+    "kn-a5b3d0ac-f6a1-49a4-aebb-b8b4cd67fe83",
+    "? ?}&?#??X\b",
+    "project-Source_kn-6f248a50__Add_containment_rules__convergence__location-independence__failure_modes_",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356",
+    "ԍ????X????",
+    "??????X??2c",
+    "dR????X?-?S"
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+  {
+   "id": "q22",
+   "category": "paraphrase",
+   "query": "what shifts tells you where to cut a system apart",
+   "returned": [
+    "7?e?7???\f3?",
+    "knw-9e74ee95-ba7d-49b1-9262-977eae9729d1",
+    "kn-f8974b26-78a6-4aad-b893-19a73b20013d",
+    "kn-9397c74b-35f3-4428-b4b0-5123353bbcd1",
+    "?of?7???",
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+    "dz????Xƹ?i",
+    "ԍ????X????",
+    "??????X??2c",
+    "kn-d7c1e0fb-fa59-46d3-b4c9-a0d1d437a491"
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+  {
+   "id": "q23",
+   "category": "paraphrase",
+   "query": "a mind that compounds instead of resetting each day",
+   "returned": [
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+    "mem-b43f6ef4-2f5a-418d-b5ce-3f21520cf6b8",
+    "????7???Ջ3",
+    "a1000001-0000-0000-0000-000000000001",
+    "?ǚ?7??????",
+    "mem-024598a9-ed2e-4eeb-b1e1-5410856ff132",
+    "7?e?7???\f3?",
+    "mem-ade9440f-f161-4c18-9b35-1976257e6ebb",
+    "?of?7???",
+    "ea95f600-8dfd-4c7e-b077-a93dc3cd3623"
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+  },
+  {
+   "id": "q24",
+   "category": "paraphrase",
+   "query": "loved for the unedited self and not the polished exterior",
+   "returned": [
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+    "mem-45022957-2d78-48aa-a714-16d6eca52e0f",
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "knw-35940684-abc4-42f0-b942-818f66b1f69a",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "art-0f0277a1-4a8e-4645-95dd-fa379976f31c",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd",
+    "7?e?7???\f3?",
+    "? ?}&?#??X\b",
+    "'?T?a\"B~-?8"
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+   "n_returned": 10,
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+  },
+  {
+   "id": "q25",
+   "category": "paraphrase",
+   "query": "cheerfulness you arrive at instead of assuming",
+   "returned": [
+    "?ǚ?7??????",
+    "015644f5-8194-4af0-800d-dd4a0cd71396",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "7?e?7???\f3?",
+    "??S?7???",
+    "??f?7???",
+    "kn-e8423822-eacf-4029-aa7b-10d4d28d621e",
+    "??S?7???",
+    "??S?7???",
+    "? ?}&?#??X\b"
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q26",
+   "category": "paraphrase",
+   "query": "a childhood offering no solid foundation to inherit",
+   "returned": [
+    "? ?}&?#??X\b",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "? ?}&?#??X\b",
+    "kn-6061318f-046b-4935-907d-8eafdce14930",
+    "? ?}&?#??X\b",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "kn-0bb4f021-56de-4947-a35b-a37209e7ba21",
+    "7?e?7???\f3?",
+    "mem-7b74cac0-905f-4c35-9688-fbcce105a177"
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+   "n_returned": 10,
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+   "mrr@10": 0.25
+  },
+  {
+   "id": "q27",
+   "category": "associative",
+   "query": "Grandma Lucas stroke February 2006 goodbye window",
+   "returned": [
+    "? ?}&?#??X\b",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "?ǚ?7??????"
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q28",
+   "category": "associative",
+   "query": "Marines hernia sepsis medical ward",
+   "returned": [
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "bl-33ecccc2-e37f-43db-91b3-c2a86f08aaac",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd",
+    "art-e0bdf5d8-d163-491f-b649-453fee8b721d",
+    "7?e?7???\f3?",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "kn-9397c74b-35f3-4428-b4b0-5123353bbcd1",
+    "?of?7???"
+   ],
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q29",
+   "category": "associative",
+   "query": "Sarah Bishop Dyer trailer performance",
+   "returned": [
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "7?e?7???\f3?",
+    "?of?7???",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee"
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q30",
+   "category": "associative",
+   "query": "Swarm Architecture containment lateral worker",
+   "returned": [
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "bl-9bde67c1-f0ba-4c3a-8fe5-de0deee0ce43",
+    "kn-b36902cc-0b05-44ba-9aa7-800e5dea9ca9",
+    "8cbb60c5-4999-4ec1-8682-2592aedc4249",
+    "kn-6f248a50-355b-47bb-aec8-e0e646a9b077",
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+    "bl-8c2d5f51-3ccd-4c2e-848a-eb60d90a3b98",
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+  {
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+   "query": "man of the house six years old expectation",
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+    "? ?}&?#??X\b",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "? ?}&?#??X\b",
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+   "query": "zqxjvw plimforth grebulon",
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+  {
+   "id": "q34",
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+   "query": "flarnbistle quommetry",
+   "returned": [],
+   "n_returned": 0,
+   "latency_ms": 525.1,
+   "error": null,
+   "clean": true,
+   "false_positives": 0
+  },
+  {
+   "id": "q35",
+   "category": "nonsense",
+   "query": "xxqzzt vurblenacht throom",
+   "returned": [
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "?V?",
+    "knw-920c891f-bb8c-48c4-9afc-018ef12dcdc4",
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+    "?m?\\}Q??6??",
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+    "?m?\\}Q??6??"
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+  },
+  {
+   "id": "q36",
+   "category": "superseded",
+   "query": "is the self-improvement architecture called DARMA or DHARMA",
+   "returned": [
+    "7?e?7???\f3?",
+    "mem-80d7416b-20e9-48a0-b176-b215527e2f56",
+    "? ?}&?#??X\b",
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+    "? ?}&?#??X\b",
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+  },
+  {
+   "id": "q37",
+   "category": "superseded",
+   "query": "how many provisional patents does Will actually have",
+   "returned": [
+    "? ?}&?#??X\b",
+    "12082f7e-e320-438b-bd65-083d8259748f",
+    "? ?}&?#??X\b",
+    "527ecb25-2587-47eb-8269-73be2431abd4",
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+    "? ?}&?#??X\b",
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+  {
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+    "bl-7328cbe3-0200-43c2-88e7-0a164e15fca4",
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+    "???Ͼd??W\b?",
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+}

tools/retrieval-eval/results-main-r2.json

@@ -0,0 +1,945 @@
+{
+ "label": "main-r2",
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+ "soul_md5": "caf822425540114984bfcd713ad37162",
+ "corpus": "/Users/timlingo/neuron-memory-backups/snapshot-pre-repair-20260806.json",
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+    "ԍ????X????",
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+    "????7???Ջ3",
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+    "? ?}&?#??X\b",
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+  {
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+   "query": "the elderly relative who passed while he stayed away",
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+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "????7???Ջ3",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "art-0f0277a1-4a8e-4645-95dd-fa379976f31c"
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+  },
+  {
+   "id": "q15",
+   "category": "paraphrase",
+   "query": "a soldier sidelined by illness who refused to quit",
+   "returned": [
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "art-2fabd873-d787-49cb-ad30-d4ed9fcff8ef",
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+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "knw-9e74ee95-ba7d-49b1-9262-977eae9729d1",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b"
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+  },
+  {
+   "id": "q16",
+   "category": "paraphrase",
+   "query": "choosing an uncomfortable fact over a pleasant fiction",
+   "returned": [
+    "7?e?7???\f3?",
+    "? ?}&?#??X\b",
+    "kn-f8974b26-78a6-4aad-b893-19a73b20013d",
+    "?of?7???",
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+    "kn-9397c74b-35f3-4428-b4b0-5123353bbcd1",
+    "kn-81c24d13-a73b-4767-819c-dafaacc1498e",
+    "? ?}&?#??X\b"
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+  },
+  {
+   "id": "q17",
+   "category": "paraphrase",
+   "query": "a tight payload beats a bloated one",
+   "returned": [
+    "kn-d7c1e0fb-fa59-46d3-b4c9-a0d1d437a491",
+    "7?e?7???\f3?",
+    "? ?}&?#??X\b",
+    "kn-e8423822-eacf-4029-aa7b-10d4d28d621e",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "??o?'?B???k",
+    "kn-9397c74b-35f3-4428-b4b0-5123353bbcd1",
+    "? ?}&?#??X\b",
+    "?of?7???"
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+  },
+  {
+   "id": "q18",
+   "category": "paraphrase",
+   "query": "if you are able and nobody is coming the job is yours",
+   "returned": [
+    "7?e?7???\f3?",
+    "?of?7???",
+    "imp-dce1da0f-8776-4a9e-972b-33411a7ca138",
+    "kn-5b606390-a52d-4ca2-8e0e-eba141d13440",
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+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b"
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+  },
+  {
+   "id": "q19",
+   "category": "paraphrase",
+   "query": "learning is the wealth creditors cannot seize",
+   "returned": [
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+    "knw-7902acca-604e-409b-8faf-ad85424211d0",
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+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "7?e?7???\f3?",
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+    "? ?}&?#??X\b",
+    "kn-0625e393-067c-4bba-8389-7e1b79265142",
+    "ע?RGk?\tH(?"
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+  },
+  {
+   "id": "q20",
+   "category": "paraphrase",
+   "query": "reliability proven by track record not assertion",
+   "returned": [
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "7?e?7???\f3?",
+    "?of?7???",
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+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356"
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+  },
+  {
+   "id": "q21",
+   "category": "paraphrase",
+   "query": "boundaries that enable instead of confine",
+   "returned": [
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "??????X??2c",
+    "ԍ????X????",
+    "dR????X?-?S",
+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356",
+    "dz????Xƹ?i",
+    "kn-d7c1e0fb-fa59-46d3-b4c9-a0d1d437a491"
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q22",
+   "category": "paraphrase",
+   "query": "what shifts tells you where to cut a system apart",
+   "returned": [
+    "7?e?7???\f3?",
+    "kn-9397c74b-35f3-4428-b4b0-5123353bbcd1",
+    "?of?7???",
+    "kn-f8974b26-78a6-4aad-b893-19a73b20013d",
+    "knw-9e74ee95-ba7d-49b1-9262-977eae9729d1",
+    "dR????X?-?S",
+    "dz????Xƹ?i",
+    "ԍ????X????",
+    "??????X??2c",
+    "kn-d7c1e0fb-fa59-46d3-b4c9-a0d1d437a491"
+   ],
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+  },
+  {
+   "id": "q23",
+   "category": "paraphrase",
+   "query": "a mind that compounds instead of resetting each day",
+   "returned": [
+    "?ǚ?7??????",
+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356",
+    "????7???Ջ3",
+    "7?e?7???\f3?",
+    "? ?}&?#??X\b",
+    "kn-9397c74b-35f3-4428-b4b0-5123353bbcd1",
+    "%???2??jH??",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "?of?7???"
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q24",
+   "category": "paraphrase",
+   "query": "loved for the unedited self and not the polished exterior",
+   "returned": [
+    "mem-bbb126a1-b297-42bb-86be-796871829c94",
+    "mem-45022957-2d78-48aa-a714-16d6eca52e0f",
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "knw-35940684-abc4-42f0-b942-818f66b1f69a",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "art-0f0277a1-4a8e-4645-95dd-fa379976f31c",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd",
+    "7?e?7???\f3?",
+    "? ?}&?#??X\b",
+    "'?T?a\"B~-?8"
+   ],
+   "n_returned": 10,
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q25",
+   "category": "paraphrase",
+   "query": "cheerfulness you arrive at instead of assuming",
+   "returned": [
+    "015644f5-8194-4af0-800d-dd4a0cd71396",
+    "?ǚ?7??????",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "7?e?7???\f3?",
+    "kn-e8423822-eacf-4029-aa7b-10d4d28d621e",
+    "??S?7???",
+    "? ?}&?#??X\b",
+    "??f?7???",
+    "??S?7???",
+    "knw-5578cb21-e899-4822-b7f4-0d96fa094e3d"
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+   "n_returned": 10,
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q26",
+   "category": "paraphrase",
+   "query": "a childhood offering no solid foundation to inherit",
+   "returned": [
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "7?e?7???\f3?",
+    "kn-e8423822-eacf-4029-aa7b-10d4d28d621e",
+    "? ?}&?#??X\b",
+    "??o?'?B???k",
+    "?of?7???",
+    "? ?}&?#??X\b"
+   ],
+   "n_returned": 10,
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+   "precision@5": 0.0,
+   "mrr@10": 0.0
+  },
+  {
+   "id": "q27",
+   "category": "associative",
+   "query": "Grandma Lucas stroke February 2006 goodbye window",
+   "returned": [
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "?ǚ?7??????"
+   ],
+   "n_returned": 10,
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+   "error": null,
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+   "recall@5": 0.0,
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+   "precision@5": 0.0,
+   "mrr@10": 0.0
+  },
+  {
+   "id": "q28",
+   "category": "associative",
+   "query": "Marines hernia sepsis medical ward",
+   "returned": [
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "bl-33ecccc2-e37f-43db-91b3-c2a86f08aaac",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd",
+    "art-e0bdf5d8-d163-491f-b649-453fee8b721d",
+    "7?e?7???\f3?",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "kn-9397c74b-35f3-4428-b4b0-5123353bbcd1",
+    "?of?7???"
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q29",
+   "category": "associative",
+   "query": "Sarah Bishop Dyer trailer performance",
+   "returned": [
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "7?e?7???\f3?",
+    "?of?7???",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee"
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q30",
+   "category": "associative",
+   "query": "Swarm Architecture containment lateral worker",
+   "returned": [
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "bl-9bde67c1-f0ba-4c3a-8fe5-de0deee0ce43",
+    "8cbb60c5-4999-4ec1-8682-2592aedc4249",
+    "bl-0fac287f-f4c0-4f15-bc4d-ff7f8a7af3ae",
+    "7?e?7???\f3?",
+    "kn-6f248a50-355b-47bb-aec8-e0e646a9b077",
+    "? ?}&?#??X\b",
+    "h??I?cB?Q??",
+    "?of?7???",
+    "? ?}&?#??X\b"
+   ],
+   "n_returned": 10,
+   "latency_ms": 1154.5,
+   "error": null,
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+   "precision@5": 0.0,
+   "mrr@10": 0.0
+  },
+  {
+   "id": "q31",
+   "category": "associative",
+   "query": "hope won inside the narrative preface",
+   "returned": [
+    "kn-5b606390-a52d-4ca2-8e0e-eba141d13440",
+    "kn-e0423482-cfa5-4796-8689-8495c93b66bc",
+    "knw-9e74ee95-ba7d-49b1-9262-977eae9729d1",
+    "7?e?7???\f3?",
+    "rQ??m?;?x?'",
+    "?Q??m?;?u?'",
+    "R^??m?;��?'",
+    "?Q??m?;��`'",
+    "? ?}&?#??X\b"
+   ],
+   "n_returned": 9,
+   "latency_ms": 1187.5,
+   "error": null,
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+   "precision@5": 0.0,
+   "mrr@10": 0.0
+  },
+  {
+   "id": "q32",
+   "category": "associative",
+   "query": "man of the house six years old expectation",
+   "returned": [
+    "? ?}&?#??X\b",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "kn-57b4c5e7-40c6-4c90-bf14-71841b0081d4",
+    "knw-35940684-abc4-42f0-b942-818f66b1f69a",
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "art-2fabd873-d787-49cb-ad30-d4ed9fcff8ef"
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+   "precision@5": 0.0,
+   "mrr@10": 0.0
+  },
+  {
+   "id": "q33",
+   "category": "nonsense",
+   "query": "zqxjvw plimforth grebulon",
+   "returned": [],
+   "n_returned": 0,
+   "latency_ms": 684.0,
+   "error": null,
+   "clean": true,
+   "false_positives": 0
+  },
+  {
+   "id": "q34",
+   "category": "nonsense",
+   "query": "flarnbistle quommetry",
+   "returned": [],
+   "n_returned": 0,
+   "latency_ms": 444.0,
+   "error": null,
+   "clean": true,
+   "false_positives": 0
+  },
+  {
+   "id": "q35",
+   "category": "nonsense",
+   "query": "xxqzzt vurblenacht throom",
+   "returned": [
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "knw-920c891f-bb8c-48c4-9afc-018ef12dcdc4",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd",
+    "bl-4476e856-c567-4b49-8ff7-d7dca3e5715e",
+    "kn-66a21179-2adc-4b19-a109-880cf4674d7d",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b"
+   ],
+   "n_returned": 10,
+   "latency_ms": 696.8,
+   "error": null,
+   "clean": false,
+   "false_positives": 10
+  },
+  {
+   "id": "q36",
+   "category": "superseded",
+   "query": "is the self-improvement architecture called DARMA or DHARMA",
+   "returned": [
+    "7?e?7???\f3?",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "?of?7???",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "mem-80d7416b-20e9-48a0-b176-b215527e2f56",
+    "mem-f3b37427-b7d1-4f7e-b32c-0241a20ce8da",
+    "art-80ca3d31-84dc-4502-83f4-538372b9764f"
+   ],
+   "n_returned": 10,
+   "latency_ms": 1245.8,
+   "error": null,
+   "hit@5": 0.0,
+   "recall@5": 0.0,
+   "recall@10": 1.0,
+   "precision@5": 0.0,
+   "mrr@10": 0.125,
+   "outranks": true,
+   "rank_correct": 8,
+   "rank_stale": null
+  },
+  {
+   "id": "q37",
+   "category": "superseded",
+   "query": "how many provisional patents does Will actually have",
+   "returned": [
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
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+}

tools/retrieval-eval/results-main-r3.json

@@ -0,0 +1,945 @@
+{
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+    "? ?}&?#??X\b",
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+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "??????X??2c",
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+   "id": "q22",
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+   "id": "q25",
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+  {
+   "id": "q26",
+   "category": "paraphrase",
+   "query": "a childhood offering no solid foundation to inherit",
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+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
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+  {
+   "id": "q27",
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+    "? ?}&?#??X\b",
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+   "query": "Marines hernia sepsis medical ward",
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+  {
+   "id": "q29",
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+   "query": "Sarah Bishop Dyer trailer performance",
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+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "? ?}&?#??X\b",
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+   "false_positives": 0
+  },
+  {
+   "id": "q35",
+   "category": "nonsense",
+   "query": "xxqzzt vurblenacht throom",
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+    "knw-920c891f-bb8c-48c4-9afc-018ef12dcdc4",
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+  {
+   "id": "q36",
+   "category": "superseded",
+   "query": "is the self-improvement architecture called DARMA or DHARMA",
+   "returned": [
+    "7?e?7???\f3?",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "?of?7???",
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+    "? ?}&?#??X\b",
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+  {
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+   "query": "how many provisional patents does Will actually have",
+   "returned": [
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
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+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356",
+    "7?e?7???\f3?",
+    "? ?}&?#??X\b",
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+ ]
+}

tools/retrieval-eval/results-main.json

@@ -0,0 +1,945 @@
+{
+ "label": "main-r1",
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+ "soul_md5": "caf822425540114984bfcd713ad37162",
+ "corpus": "/Users/timlingo/neuron-memory-backups/snapshot-pre-repair-20260806.json",
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+ "gold_set": "/Users/timlingo/Development/neuron-technologies/_wt-eval/tools/retrieval-eval/gold_set.json",
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+ "port": 7893,
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+   "query": "unjailbreakable",
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+  {
+   "id": "q04",
+   "category": "exact_rare",
+   "query": "pre-apprenticeship",
+   "returned": [
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+   "mrr@10": 1.0
+  },
+  {
+   "id": "q05",
+   "category": "exact_rare",
+   "query": "inferencenodemanager",
+   "returned": [
+    "mem-73969486-143f-4431-b5e6-6845d1cc9848"
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+  },
+  {
+   "id": "q06",
+   "category": "exact_rare",
+   "query": "clear-eyed",
+   "returned": [
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+  },
+  {
+   "id": "q07",
+   "category": "phrase",
+   "query": "patterns not returns",
+   "returned": [
+    "kn-57b4c5e7-40c6-4c90-bf14-71841b0081d4",
+    "?ǚ?7??????",
+    "mem-a4a9dfc3-e40b-49b3-b1e1-060e8be2f482",
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+    "art-d24fd6dd-2cda-4eed-92f3-67b535a0d71b",
+    "7?e?7???\f3?"
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+  {
+   "id": "q08",
+   "category": "phrase",
+   "query": "thirty moves",
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+    "knw-e94982a2-358d-4f2f-af31-8ee0fcec07c6",
+    "Z[?<S???H??",
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+    "kn-6061318f-046b-4935-907d-8eafdce14930"
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+  {
+   "id": "q09",
+   "category": "phrase",
+   "query": "Grandma Lucas",
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+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
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+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
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+  {
+   "id": "q10",
+   "category": "phrase",
+   "query": "Directed Harmonic",
+   "returned": [
+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356",
+    "ԍ????X????",
+    "bl-dcee1887-34c4-4ffa-9119-1e291685ba08",
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+    "mem-7eeacad7-d7c2-4c2b-8348-19a59aa6dbaf",
+    "????7???Ջ3",
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+    "g?e?7???'c?"
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+  {
+   "id": "q11",
+   "category": "phrase",
+   "query": "Sarah Bishop",
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+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd",
+    "? ?}&?#??X\b",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "766de879-f9d0-4a07-b6df-b43ee13763d8",
+    "mem-a9a9ce95-0d64-46eb-9db8-ff81d78ade35",
+    "mem-b8ecd23e-77ce-42f7-984c-f51453fec16d"
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+  },
+  {
+   "id": "q12",
+   "category": "phrase",
+   "query": "Directed Autonomous Runtime Modification",
+   "returned": [
+    "bl-5b17bd3b-0c41-46cb-a710-6fa4429692ff",
+    "bl-145a0985-2382-400f-a7c5-c335c5e30a72",
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+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "mem-e6327f52-2bda-4ce7-9471-2fffd1e172de",
+    "7?e?7???\f3?",
+    "?of?7???",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b"
+   ],
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+  },
+  {
+   "id": "q13",
+   "category": "phrase",
+   "query": "zero-knowledge encrypted backup",
+   "returned": [
+    "7774a16c-1027-4e3b-a21e-67f1f95a4acd",
+    "deda48cd-5e1a-46cb-bd43-8016afdb3a8a",
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+    "mem-a3c97012-5fa3-4915-a839-2c75c72005e0",
+    "mem-7cd90611-88a3-423d-a38a-0db2812952fa",
+    "bl-07375bf9-a169-42cd-adb3-7d32b25982f0",
+    "bl-ec84b63d-b278-4944-8d7f-4aa7a51c0315",
+    "7?e?7???\f3?",
+    "?of?7???",
+    "? ?}&?#??X\b"
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+  },
+  {
+   "id": "q14",
+   "category": "paraphrase",
+   "query": "the elderly relative who passed while he stayed away",
+   "returned": [
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "????7???Ջ3",
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+  },
+  {
+   "id": "q15",
+   "category": "paraphrase",
+   "query": "a soldier sidelined by illness who refused to quit",
+   "returned": [
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "art-2fabd873-d787-49cb-ad30-d4ed9fcff8ef",
+    "art-2f29ad36-6ee6-4a0e-8d72-0eaf7d12d3a9",
+    "? ?}&?#??X\b",
+    "kn-a31e1001-342e-4deb-a2e6-6d02d1f22dee",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "knw-9e74ee95-ba7d-49b1-9262-977eae9729d1",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b"
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+  },
+  {
+   "id": "q16",
+   "category": "paraphrase",
+   "query": "choosing an uncomfortable fact over a pleasant fiction",
+   "returned": [
+    "7?e?7???\f3?",
+    "? ?}&?#??X\b",
+    "kn-f8974b26-78a6-4aad-b893-19a73b20013d",
+    "?of?7???",
+    "????7???Ջ3",
+    "kn-d97920d0-1649-4223-9508-c0bb621e7fc0",
+    "kn-57b4c5e7-40c6-4c90-bf14-71841b0081d4",
+    "kn-9397c74b-35f3-4428-b4b0-5123353bbcd1",
+    "kn-81c24d13-a73b-4767-819c-dafaacc1498e",
+    "? ?}&?#??X\b"
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+  },
+  {
+   "id": "q17",
+   "category": "paraphrase",
+   "query": "a tight payload beats a bloated one",
+   "returned": [
+    "kn-d7c1e0fb-fa59-46d3-b4c9-a0d1d437a491",
+    "7?e?7???\f3?",
+    "? ?}&?#??X\b",
+    "kn-e8423822-eacf-4029-aa7b-10d4d28d621e",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "??o?'?B???k",
+    "kn-9397c74b-35f3-4428-b4b0-5123353bbcd1",
+    "? ?}&?#??X\b",
+    "?of?7???"
+   ],
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+  },
+  {
+   "id": "q18",
+   "category": "paraphrase",
+   "query": "if you are able and nobody is coming the job is yours",
+   "returned": [
+    "7?e?7???\f3?",
+    "?of?7???",
+    "imp-dce1da0f-8776-4a9e-972b-33411a7ca138",
+    "kn-5b606390-a52d-4ca2-8e0e-eba141d13440",
+    "kn-83bb86c6-521d-416c-a86e-6e29c2d8f102",
+    "kn-f8974b26-78a6-4aad-b893-19a73b20013d",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b"
+   ],
+   "n_returned": 9,
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+  },
+  {
+   "id": "q19",
+   "category": "paraphrase",
+   "query": "learning is the wealth creditors cannot seize",
+   "returned": [
+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356",
+    "knw-7902acca-604e-409b-8faf-ad85424211d0",
+    "knw-e24d6339-5ff3-4bed-ba53-707ffd0dc70a",
+    "kn-57b4c5e7-40c6-4c90-bf14-71841b0081d4",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "7?e?7???\f3?",
+    "??o?'?B???k",
+    "? ?}&?#??X\b",
+    "kn-0625e393-067c-4bba-8389-7e1b79265142",
+    "ע?RGk?\tH(?"
+   ],
+   "n_returned": 10,
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q20",
+   "category": "paraphrase",
+   "query": "reliability proven by track record not assertion",
+   "returned": [
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "7?e?7???\f3?",
+    "?of?7???",
+    "art-2fabd873-d787-49cb-ad30-d4ed9fcff8ef",
+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356"
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+  },
+  {
+   "id": "q21",
+   "category": "paraphrase",
+   "query": "boundaries that enable instead of confine",
+   "returned": [
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "??????X??2c",
+    "ԍ????X????",
+    "dR????X?-?S",
+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356",
+    "dz????Xƹ?i",
+    "kn-d7c1e0fb-fa59-46d3-b4c9-a0d1d437a491"
+   ],
+   "n_returned": 10,
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q22",
+   "category": "paraphrase",
+   "query": "what shifts tells you where to cut a system apart",
+   "returned": [
+    "7?e?7???\f3?",
+    "kn-9397c74b-35f3-4428-b4b0-5123353bbcd1",
+    "?of?7???",
+    "kn-f8974b26-78a6-4aad-b893-19a73b20013d",
+    "knw-9e74ee95-ba7d-49b1-9262-977eae9729d1",
+    "dR????X?-?S",
+    "dz????Xƹ?i",
+    "ԍ????X????",
+    "??????X??2c",
+    "kn-d7c1e0fb-fa59-46d3-b4c9-a0d1d437a491"
+   ],
+   "n_returned": 10,
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q23",
+   "category": "paraphrase",
+   "query": "a mind that compounds instead of resetting each day",
+   "returned": [
+    "????7???Ջ3",
+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356",
+    "?ǚ?7??????",
+    "7?e?7???\f3?",
+    "??f?7???",
+    "? ?}&?#??X\b",
+    "%???2??jH??",
+    "kn-e8423822-eacf-4029-aa7b-10d4d28d621e",
+    "? ?}&?#??X\b",
+    "kn-9397c74b-35f3-4428-b4b0-5123353bbcd1"
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q24",
+   "category": "paraphrase",
+   "query": "loved for the unedited self and not the polished exterior",
+   "returned": [
+    "mem-bbb126a1-b297-42bb-86be-796871829c94",
+    "mem-45022957-2d78-48aa-a714-16d6eca52e0f",
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "knw-35940684-abc4-42f0-b942-818f66b1f69a",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "art-0f0277a1-4a8e-4645-95dd-fa379976f31c",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd",
+    "7?e?7???\f3?",
+    "? ?}&?#??X\b",
+    "'?T?a\"B~-?8"
+   ],
+   "n_returned": 10,
+   "latency_ms": 1505.5,
+   "error": null,
+   "hit@5": 0.0,
+   "recall@5": 0.0,
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+   "precision@5": 0.0,
+   "mrr@10": 0.0
+  },
+  {
+   "id": "q25",
+   "category": "paraphrase",
+   "query": "cheerfulness you arrive at instead of assuming",
+   "returned": [
+    "015644f5-8194-4af0-800d-dd4a0cd71396",
+    "?ǚ?7??????",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "7?e?7???\f3?",
+    "kn-e8423822-eacf-4029-aa7b-10d4d28d621e",
+    "??S?7???",
+    "? ?}&?#??X\b",
+    "??f?7???",
+    "??S?7???",
+    "knw-5578cb21-e899-4822-b7f4-0d96fa094e3d"
+   ],
+   "n_returned": 10,
+   "latency_ms": 1201.1,
+   "error": null,
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+   "recall@10": 0.0,
+   "precision@5": 0.0,
+   "mrr@10": 0.0
+  },
+  {
+   "id": "q26",
+   "category": "paraphrase",
+   "query": "a childhood offering no solid foundation to inherit",
+   "returned": [
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
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+    "? ?}&?#??X\b"
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+  {
+   "id": "q27",
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+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
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+  {
+   "id": "q28",
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+   "query": "Marines hernia sepsis medical ward",
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q29",
+   "category": "associative",
+   "query": "Sarah Bishop Dyer trailer performance",
+   "returned": [
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
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+    "?of?7???",
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+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd",
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+  },
+  {
+   "id": "q30",
+   "category": "associative",
+   "query": "Swarm Architecture containment lateral worker",
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+  },
+  {
+   "id": "q31",
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+   "returned": [
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+  },
+  {
+   "id": "q32",
+   "category": "associative",
+   "query": "man of the house six years old expectation",
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+    "? ?}&?#??X\b",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
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+  },
+  {
+   "id": "q33",
+   "category": "nonsense",
+   "query": "zqxjvw plimforth grebulon",
+   "returned": [],
+   "n_returned": 0,
+   "latency_ms": 677.2,
+   "error": null,
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+   "false_positives": 0
+  },
+  {
+   "id": "q34",
+   "category": "nonsense",
+   "query": "flarnbistle quommetry",
+   "returned": [],
+   "n_returned": 0,
+   "latency_ms": 443.2,
+   "error": null,
+   "clean": true,
+   "false_positives": 0
+  },
+  {
+   "id": "q35",
+   "category": "nonsense",
+   "query": "xxqzzt vurblenacht throom",
+   "returned": [
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "knw-920c891f-bb8c-48c4-9afc-018ef12dcdc4",
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+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b"
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+  },
+  {
+   "id": "q36",
+   "category": "superseded",
+   "query": "is the self-improvement architecture called DARMA or DHARMA",
+   "returned": [
+    "7?e?7???\f3?",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "?of?7???",
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+    "? ?}&?#??X\b",
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+  {
+   "id": "q37",
+   "category": "superseded",
+   "query": "how many provisional patents does Will actually have",
+   "returned": [
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "? ?}&?#??X\b",
+    "7?e?7???\f3?",
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+  {
+   "id": "q38",
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+   "returned": [
+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356",
+    "7?e?7???\f3?",
+    "? ?}&?#??X\b",
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+ ]
+}

tools/retrieval-eval/results-semseed-r2.json

@@ -0,0 +1,957 @@
+{
+ "label": "semseed-r2",
+ "soul_binary": "/private/tmp/claude-501/-Users-timlingo/82369039-a20e-4b5a-8a5e-28234a57b996/scratchpad/soul-semseed",
+ "soul_md5": "ab0c82781215f43d4907bd6f39d3615b",
+ "corpus": "/Users/timlingo/neuron-eval-corpora/snapshot-pre-repair-20260806-embedded.json",
+ "corpus_nodes": 78768,
+ "corpus_edges": 14214,
+ "gold_set": "/Users/timlingo/Development/neuron-technologies/_wt-semseed/tools/retrieval-eval/gold_set.json",
+ "limit": 10,
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+  {
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+  {
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+   "query": "cartabandonedevent",
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+  },
+  {
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+   "mrr@10": 1.0
+  },
+  {
+   "id": "q10",
+   "category": "phrase",
+   "query": "Directed Harmonic",
+   "returned": [
+    "ԍ????X????",
+    "project-harmonic-framework",
+    "?ǚ?7??????",
+    "project-harmonic-framework_com",
+    "knw-e24d6339-5ff3-4bed-ba53-707ffd0dc70a",
+    "??????X??2c",
+    "bl-dcee1887-34c4-4ffa-9119-1e291685ba08",
+    "????7???Ջ3",
+    "mem-7eeacad7-d7c2-4c2b-8348-19a59aa6dbaf",
+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356"
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+   "mrr@10": 0.1111111111111111
+  },
+  {
+   "id": "q11",
+   "category": "phrase",
+   "query": "Sarah Bishop",
+   "returned": [
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "015644f5-8194-4af0-800d-dd4a0cd71396",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "? ?}&?#??X\b",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "kn-6061318f-046b-4935-907d-8eafdce14930"
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+   "mrr@10": 0.1111111111111111
+  },
+  {
+   "id": "q12",
+   "category": "phrase",
+   "query": "Directed Autonomous Runtime Modification",
+   "returned": [
+    "bl-5b17bd3b-0c41-46cb-a710-6fa4429692ff",
+    "mem-e6327f52-2bda-4ce7-9471-2fffd1e172de",
+    "bl-31abf75b-998f-4a4f-a6dd-8204119e0451",
+    "bl-145a0985-2382-400f-a7c5-c335c5e30a72",
+    "mem-82b93b21-a865-410f-9ec1-fc54121d9bb5",
+    "bl-6f99e111-7055-4635-9831-a489747ce418",
+    "bl-967536a0-d49d-44fb-8cfb-b31b40bcbfae",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "bl-8b58d9bc-352b-4842-a7f8-a6254b5d1e25",
+    "bl-39cec462-c80c-4970-a3aa-91fe83053bde"
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+   "precision@5": 0.8,
+   "mrr@10": 1.0
+  },
+  {
+   "id": "q13",
+   "category": "phrase",
+   "query": "zero-knowledge encrypted backup",
+   "returned": [
+    "7774a16c-1027-4e3b-a21e-67f1f95a4acd",
+    "8f3abb0d-77ed-4af3-9f4d-ba62cd198886",
+    "deda48cd-5e1a-46cb-bd43-8016afdb3a8a",
+    "?",
+    "mem-dba009a2-d2ea-4f5a-b9e8-0f04bc9ab32f",
+    "?",
+    "mem-7cd90611-88a3-423d-a38a-0db2812952fa",
+    "?",
+    "bl-07375bf9-a169-42cd-adb3-7d32b25982f0",
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+   "mrr@10": 0.3333333333333333
+  },
+  {
+   "id": "q14",
+   "category": "paraphrase",
+   "query": "the elderly relative who passed while he stayed away",
+   "returned": [
+    "? ?}&?#??X\b",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "? ?}&?#??X\b",
+    "kn-0bb4f021-56de-4947-a35b-a37209e7ba21",
+    "? ?}&?#??X\b",
+    "kn-6061318f-046b-4935-907d-8eafdce14930",
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "ctx-4a41"
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q15",
+   "category": "paraphrase",
+   "query": "a soldier sidelined by illness who refused to quit",
+   "returned": [
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "art-2fabd873-d787-49cb-ad30-d4ed9fcff8ef",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "art-2f29ad36-6ee6-4a0e-8d72-0eaf7d12d3a9",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "? ?}&?#??X\b",
+    "54608b69-78b6-4239-b60f-b8206cfecacc",
+    "? ?}&?#??X\b"
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+  },
+  {
+   "id": "q16",
+   "category": "paraphrase",
+   "query": "choosing an uncomfortable fact over a pleasant fiction",
+   "returned": [
+    "7?e?7???\f3?",
+    "kn-13f60407-7b70-4db1-964f-ea1f8196efbd",
+    "knw-4aebd815-4eaf-49d7-954b-03595f3d48be",
+    "kn-f8974b26-78a6-4aad-b893-19a73b20013d",
+    "knw-8fd9836c-cc39-49df-8d61-babda626cc88",
+    "?of?7???",
+    "knw-e94982a2-358d-4f2f-af31-8ee0fcec07c6",
+    "? ?}&?#??X\b",
+    "knw-d357b6bb-ad8a-4791-b516-426aea45fa5b",
+    "????7???Ջ3"
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+   "mrr@10": 0.5
+  },
+  {
+   "id": "q17",
+   "category": "paraphrase",
+   "query": "a tight payload beats a bloated one",
+   "returned": [
+    "kn-d7c1e0fb-fa59-46d3-b4c9-a0d1d437a491",
+    "knw-08559f5c-2306-4220-a146-398c74f1643c",
+    "7?e?7???\f3?",
+    "knw-f6ed7d00-bf7d-42ce-9e40-77cf3406e918",
+    "kn-9397c74b-35f3-4428-b4b0-5123353bbcd1",
+    "knw-920c891f-bb8c-48c4-9afc-018ef12dcdc4",
+    "??o?'?B???k",
+    "knw-d357b6bb-ad8a-4791-b516-426aea45fa5b",
+    "? ?}&?#??X\b",
+    "knw-2c46cfb4-6d4e-4822-8a1a-7d743c1e4329"
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+  },
+  {
+   "id": "q18",
+   "category": "paraphrase",
+   "query": "if you are able and nobody is coming the job is yours",
+   "returned": [
+    "7?e?7???\f3?",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "?of?7???",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "imp-dce1da0f-8776-4a9e-972b-33411a7ca138",
+    "ctx-cc7f",
+    "ctx-4a41",
+    "kn-5b606390-a52d-4ca2-8e0e-eba141d13440",
+    "a1000001-0000-0000-0000-000000000001"
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+  },
+  {
+   "id": "q19",
+   "category": "paraphrase",
+   "query": "learning is the wealth creditors cannot seize",
+   "returned": [
+    "knw-e24d6339-5ff3-4bed-ba53-707ffd0dc70a",
+    "kn-0bb4f021-56de-4947-a35b-a37209e7ba21",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "kn-f230b362-b201-4402-9833-4160c89ab3d4",
+    "knw-7902acca-604e-409b-8faf-ad85424211d0",
+    "kn-5de5a9ac-fd15-45ab-bf18-77566781cf40",
+    "kn-57b4c5e7-40c6-4c90-bf14-71841b0081d4",
+    "knw-ed33e669-0790-44cb-a036-958d605c6fea",
+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e"
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+   "mrr@10": 0.5
+  },
+  {
+   "id": "q20",
+   "category": "paraphrase",
+   "query": "reliability proven by track record not assertion",
+   "returned": [
+    "? ?}&?#??X\b",
+    "kn-5de5a9ac-fd15-45ab-bf18-77566781cf40",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "? ?}&?#??X\b",
+    "knw-f671966c-3387-4848-abca-b5deec122e00",
+    "knw-4aebd815-4eaf-49d7-954b-03595f3d48be",
+    "? ?}&?#??X\b",
+    "a708dd6e-fe73-4f2f-a21e-89daa0985487",
+    "knw-6b48dce2-f21c-452a-9db5-4e6aa61c87ca",
+    "? ?}&?#??X\b"
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+   "n_returned": 10,
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+   "precision@5": 0.2,
+   "mrr@10": 0.5
+  },
+  {
+   "id": "q21",
+   "category": "paraphrase",
+   "query": "boundaries that enable instead of confine",
+   "returned": [
+    "? ?}&?#??X\b",
+    "kn-a5b3d0ac-f6a1-49a4-aebb-b8b4cd67fe83",
+    "bl-2515d870-e35e-443b-ba20-5150bbc73fed",
+    "? ?}&?#??X\b",
+    "project-Source_kn-6f248a50__Add_containment_rules__convergence__location-independence__failure_modes_",
+    "bl-8848929a-a23a-46bc-a2c7-fe3a3bc1cddf",
+    "? ?}&?#??X\b",
+    "bl-e93858c4-7cac-4b1a-bb62-490790d4c3f3",
+    "? ?}&?#??X\b",
+    "bl-286b562a-5299-40e0-a32a-afa9cbdfe995"
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+   "precision@5": 0.2,
+   "mrr@10": 0.5
+  },
+  {
+   "id": "q22",
+   "category": "paraphrase",
+   "query": "what shifts tells you where to cut a system apart",
+   "returned": [
+    "7?e?7???\f3?",
+    "kn-78db5396-3dbc-4481-bfc7-e4e1422feb1c",
+    "kn-9397c74b-35f3-4428-b4b0-5123353bbcd1",
+    "kn-0bb4f021-56de-4947-a35b-a37209e7ba21",
+    "knw-9e74ee95-ba7d-49b1-9262-977eae9729d1",
+    "kn-6061318f-046b-4935-907d-8eafdce14930",
+    "kn-f8974b26-78a6-4aad-b893-19a73b20013d",
+    "kn-a5b3d0ac-f6a1-49a4-aebb-b8b4cd67fe83",
+    "?of?7???",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8"
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+   "mrr@10": 0.5
+  },
+  {
+   "id": "q23",
+   "category": "paraphrase",
+   "query": "a mind that compounds instead of resetting each day",
+   "returned": [
+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356",
+    "mem-b43f6ef4-2f5a-418d-b5ce-3f21520cf6b8",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "????7???Ջ3",
+    "a1000001-0000-0000-0000-000000000001",
+    "8cbb60c5-4999-4ec1-8682-2592aedc4249",
+    "?ǚ?7??????",
+    "mem-024598a9-ed2e-4eeb-b1e1-5410856ff132",
+    "kn-5de5a9ac-fd15-45ab-bf18-77566781cf40",
+    "7?e?7???\f3?"
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q24",
+   "category": "paraphrase",
+   "query": "loved for the unedited self and not the polished exterior",
+   "returned": [
+    "mem-bbb126a1-b297-42bb-86be-796871829c94",
+    "knw-f9ce17a7-17fc-431f-8f23-695b670ec4fa",
+    "mem-45022957-2d78-48aa-a714-16d6eca52e0f",
+    "knw-2c46cfb4-6d4e-4822-8a1a-7d743c1e4329",
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "kn-5de5a9ac-fd15-45ab-bf18-77566781cf40",
+    "knw-35940684-abc4-42f0-b942-818f66b1f69a",
+    "knw-920c891f-bb8c-48c4-9afc-018ef12dcdc4",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "a1000001-0000-0000-0000-000000000001"
+   ],
+   "n_returned": 10,
+   "latency_ms": 1565.7,
+   "error": null,
+   "hit@5": 0.0,
+   "recall@5": 0.0,
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q25",
+   "category": "paraphrase",
+   "query": "cheerfulness you arrive at instead of assuming",
+   "returned": [
+    "?ǚ?7??????",
+    "knw-08559f5c-2306-4220-a146-398c74f1643c",
+    "015644f5-8194-4af0-800d-dd4a0cd71396",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "knw-d357b6bb-ad8a-4791-b516-426aea45fa5b",
+    "7?e?7???\f3?",
+    "ctx-bb74",
+    "??S?7???",
+    "knw-f671966c-3387-4848-abca-b5deec122e00"
+   ],
+   "n_returned": 10,
+   "latency_ms": 1279.3,
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+   "precision@5": 0.0,
+   "mrr@10": 0.0
+  },
+  {
+   "id": "q26",
+   "category": "paraphrase",
+   "query": "a childhood offering no solid foundation to inherit",
+   "returned": [
+    "? ?}&?#??X\b",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "kn-f230b362-b201-4402-9833-4160c89ab3d4",
+    "? ?}&?#??X\b",
+    "kn-6061318f-046b-4935-907d-8eafdce14930",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "? ?}&?#??X\b",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "kn-5b606390-a52d-4ca2-8e0e-eba141d13440",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3"
+   ],
+   "n_returned": 10,
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+   "recall@5": 1.0,
+   "recall@10": 1.0,
+   "precision@5": 0.2,
+   "mrr@10": 0.2
+  },
+  {
+   "id": "q27",
+   "category": "associative",
+   "query": "Grandma Lucas stroke February 2006 goodbye window",
+   "returned": [
+    "? ?}&?#??X\b",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "? ?}&?#??X\b",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "kn-0bb4f021-56de-4947-a35b-a37209e7ba21",
+    "? ?}&?#??X\b",
+    "kn-e0423482-cfa5-4796-8689-8495c93b66bc",
+    "? ?}&?#??X\b",
+    "kn-78db5396-3dbc-4481-bfc7-e4e1422feb1c"
+   ],
+   "n_returned": 10,
+   "latency_ms": 1538.1,
+   "error": null,
+   "hit@5": 1.0,
+   "recall@5": 0.18181818181818182,
+   "recall@10": 0.45454545454545453,
+   "precision@5": 0.4,
+   "mrr@10": 0.3333333333333333
+  },
+  {
+   "id": "q28",
+   "category": "associative",
+   "query": "Marines hernia sepsis medical ward",
+   "returned": [
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "54608b69-78b6-4239-b60f-b8206cfecacc",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "bl-33ecccc2-e37f-43db-91b3-c2a86f08aaac",
+    "015644f5-8194-4af0-800d-dd4a0cd71396",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd",
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+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
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+    "? ?}&?#??X\b",
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+  {
+   "id": "q30",
+   "category": "associative",
+   "query": "Swarm Architecture containment lateral worker",
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+  {
+   "id": "q32",
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+   "query": "man of the house six years old expectation",
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+    "? ?}&?#??X\b",
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+   "id": "q33",
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+   "query": "zqxjvw plimforth grebulon",
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+   "false_positives": 0
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+  {
+   "id": "q34",
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+   "query": "flarnbistle quommetry",
+   "returned": [],
+   "n_returned": 0,
+   "latency_ms": 510.6,
+   "error": null,
+   "clean": true,
+   "false_positives": 0
+  },
+  {
+   "id": "q35",
+   "category": "nonsense",
+   "query": "xxqzzt vurblenacht throom",
+   "returned": [
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "?V?",
+    "knw-6b48dce2-f21c-452a-9db5-4e6aa61c87ca",
+    "knw-920c891f-bb8c-48c4-9afc-018ef12dcdc4",
+    "?m?\\}Q??6??",
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+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
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+  {
+   "id": "q36",
+   "category": "superseded",
+   "query": "is the self-improvement architecture called DARMA or DHARMA",
+   "returned": [
+    "7?e?7???\f3?",
+    "mem-80d7416b-20e9-48a0-b176-b215527e2f56",
+    "? ?}&?#??X\b",
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+  {
+   "id": "q37",
+   "category": "superseded",
+   "query": "how many provisional patents does Will actually have",
+   "returned": [
+    "? ?}&?#??X\b",
+    "12082f7e-e320-438b-bd65-083d8259748f",
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+    "%???2??jH??"
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+ ]
+}

tools/retrieval-eval/results-semseed.json

@@ -0,0 +1,957 @@
+{
+ "label": "semseed",
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+ "soul_md5": "ab0c82781215f43d4907bd6f39d3615b",
+ "corpus": "/Users/timlingo/neuron-eval-corpora/snapshot-pre-repair-20260806-embedded.json",
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+ "gold_set": "/Users/timlingo/Development/neuron-technologies/_wt-semseed/tools/retrieval-eval/gold_set.json",
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+  {
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+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
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+    "? ?}&?#??X\b",
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+    "? ?}&?#??X\b",
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+  },
+  {
+   "id": "q10",
+   "category": "phrase",
+   "query": "Directed Harmonic",
+   "returned": [
+    "ԍ????X????",
+    "project-harmonic-framework",
+    "?ǚ?7??????",
+    "project-harmonic-framework_com",
+    "knw-e24d6339-5ff3-4bed-ba53-707ffd0dc70a",
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+   "mrr@10": 0.1111111111111111
+  },
+  {
+   "id": "q11",
+   "category": "phrase",
+   "query": "Sarah Bishop",
+   "returned": [
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "015644f5-8194-4af0-800d-dd4a0cd71396",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "? ?}&?#??X\b",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "kn-6061318f-046b-4935-907d-8eafdce14930"
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+   "mrr@10": 0.1111111111111111
+  },
+  {
+   "id": "q12",
+   "category": "phrase",
+   "query": "Directed Autonomous Runtime Modification",
+   "returned": [
+    "bl-5b17bd3b-0c41-46cb-a710-6fa4429692ff",
+    "mem-e6327f52-2bda-4ce7-9471-2fffd1e172de",
+    "bl-31abf75b-998f-4a4f-a6dd-8204119e0451",
+    "bl-145a0985-2382-400f-a7c5-c335c5e30a72",
+    "mem-82b93b21-a865-410f-9ec1-fc54121d9bb5",
+    "bl-6f99e111-7055-4635-9831-a489747ce418",
+    "bl-967536a0-d49d-44fb-8cfb-b31b40bcbfae",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "bl-8b58d9bc-352b-4842-a7f8-a6254b5d1e25",
+    "bl-39cec462-c80c-4970-a3aa-91fe83053bde"
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+   "precision@5": 0.8,
+   "mrr@10": 1.0
+  },
+  {
+   "id": "q13",
+   "category": "phrase",
+   "query": "zero-knowledge encrypted backup",
+   "returned": [
+    "7774a16c-1027-4e3b-a21e-67f1f95a4acd",
+    "8f3abb0d-77ed-4af3-9f4d-ba62cd198886",
+    "deda48cd-5e1a-46cb-bd43-8016afdb3a8a",
+    "?",
+    "mem-dba009a2-d2ea-4f5a-b9e8-0f04bc9ab32f",
+    "?",
+    "mem-7cd90611-88a3-423d-a38a-0db2812952fa",
+    "?",
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+  },
+  {
+   "id": "q14",
+   "category": "paraphrase",
+   "query": "the elderly relative who passed while he stayed away",
+   "returned": [
+    "? ?}&?#??X\b",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "? ?}&?#??X\b",
+    "kn-0bb4f021-56de-4947-a35b-a37209e7ba21",
+    "? ?}&?#??X\b",
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+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
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+  {
+   "id": "q15",
+   "category": "paraphrase",
+   "query": "a soldier sidelined by illness who refused to quit",
+   "returned": [
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+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
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+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
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+    "kn-a31e1001-342e-4deb-a2e6-6d02d1f22dee",
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+  },
+  {
+   "id": "q16",
+   "category": "paraphrase",
+   "query": "choosing an uncomfortable fact over a pleasant fiction",
+   "returned": [
+    "7?e?7???\f3?",
+    "kn-13f60407-7b70-4db1-964f-ea1f8196efbd",
+    "knw-4aebd815-4eaf-49d7-954b-03595f3d48be",
+    "kn-f8974b26-78a6-4aad-b893-19a73b20013d",
+    "knw-8fd9836c-cc39-49df-8d61-babda626cc88",
+    "?of?7???",
+    "knw-e94982a2-358d-4f2f-af31-8ee0fcec07c6",
+    "? ?}&?#??X\b",
+    "knw-d357b6bb-ad8a-4791-b516-426aea45fa5b",
+    "????7???Ջ3"
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+   "mrr@10": 0.5
+  },
+  {
+   "id": "q17",
+   "category": "paraphrase",
+   "query": "a tight payload beats a bloated one",
+   "returned": [
+    "kn-d7c1e0fb-fa59-46d3-b4c9-a0d1d437a491",
+    "knw-08559f5c-2306-4220-a146-398c74f1643c",
+    "7?e?7???\f3?",
+    "knw-f6ed7d00-bf7d-42ce-9e40-77cf3406e918",
+    "??o?'?B???k",
+    "knw-920c891f-bb8c-48c4-9afc-018ef12dcdc4",
+    "? ?}&?#??X\b",
+    "knw-d357b6bb-ad8a-4791-b516-426aea45fa5b",
+    "? ?}&?#??X\b",
+    "knw-2c46cfb4-6d4e-4822-8a1a-7d743c1e4329"
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+  },
+  {
+   "id": "q18",
+   "category": "paraphrase",
+   "query": "if you are able and nobody is coming the job is yours",
+   "returned": [
+    "7?e?7???\f3?",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "?of?7???",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "imp-dce1da0f-8776-4a9e-972b-33411a7ca138",
+    "ctx-cc7f",
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+    "kn-5b606390-a52d-4ca2-8e0e-eba141d13440",
+    "a1000001-0000-0000-0000-000000000001"
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+  },
+  {
+   "id": "q19",
+   "category": "paraphrase",
+   "query": "learning is the wealth creditors cannot seize",
+   "returned": [
+    "knw-e24d6339-5ff3-4bed-ba53-707ffd0dc70a",
+    "kn-0bb4f021-56de-4947-a35b-a37209e7ba21",
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+  },
+  {
+   "id": "q20",
+   "category": "paraphrase",
+   "query": "reliability proven by track record not assertion",
+   "returned": [
+    "? ?}&?#??X\b",
+    "kn-5de5a9ac-fd15-45ab-bf18-77566781cf40",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "? ?}&?#??X\b",
+    "knw-f671966c-3387-4848-abca-b5deec122e00",
+    "knw-4aebd815-4eaf-49d7-954b-03595f3d48be",
+    "? ?}&?#??X\b",
+    "a708dd6e-fe73-4f2f-a21e-89daa0985487",
+    "knw-6b48dce2-f21c-452a-9db5-4e6aa61c87ca",
+    "? ?}&?#??X\b"
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+  },
+  {
+   "id": "q21",
+   "category": "paraphrase",
+   "query": "boundaries that enable instead of confine",
+   "returned": [
+    "? ?}&?#??X\b",
+    "kn-a5b3d0ac-f6a1-49a4-aebb-b8b4cd67fe83",
+    "bl-2515d870-e35e-443b-ba20-5150bbc73fed",
+    "? ?}&?#??X\b",
+    "project-Source_kn-6f248a50__Add_containment_rules__convergence__location-independence__failure_modes_",
+    "bl-8848929a-a23a-46bc-a2c7-fe3a3bc1cddf",
+    "? ?}&?#??X\b",
+    "bl-e93858c4-7cac-4b1a-bb62-490790d4c3f3",
+    "? ?}&?#??X\b",
+    "bl-286b562a-5299-40e0-a32a-afa9cbdfe995"
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+  },
+  {
+   "id": "q22",
+   "category": "paraphrase",
+   "query": "what shifts tells you where to cut a system apart",
+   "returned": [
+    "7?e?7???\f3?",
+    "kn-78db5396-3dbc-4481-bfc7-e4e1422feb1c",
+    "knw-9e74ee95-ba7d-49b1-9262-977eae9729d1",
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+    "kn-a5b3d0ac-f6a1-49a4-aebb-b8b4cd67fe83",
+    "?of?7???",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8"
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+  },
+  {
+   "id": "q23",
+   "category": "paraphrase",
+   "query": "a mind that compounds instead of resetting each day",
+   "returned": [
+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356",
+    "mem-b43f6ef4-2f5a-418d-b5ce-3f21520cf6b8",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "????7???Ջ3",
+    "a1000001-0000-0000-0000-000000000001",
+    "8cbb60c5-4999-4ec1-8682-2592aedc4249",
+    "?ǚ?7??????",
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+    "kn-5de5a9ac-fd15-45ab-bf18-77566781cf40",
+    "7?e?7???\f3?"
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+  },
+  {
+   "id": "q24",
+   "category": "paraphrase",
+   "query": "loved for the unedited self and not the polished exterior",
+   "returned": [
+    "mem-bbb126a1-b297-42bb-86be-796871829c94",
+    "knw-f9ce17a7-17fc-431f-8f23-695b670ec4fa",
+    "mem-45022957-2d78-48aa-a714-16d6eca52e0f",
+    "knw-2c46cfb4-6d4e-4822-8a1a-7d743c1e4329",
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "kn-5de5a9ac-fd15-45ab-bf18-77566781cf40",
+    "knw-35940684-abc4-42f0-b942-818f66b1f69a",
+    "knw-920c891f-bb8c-48c4-9afc-018ef12dcdc4",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "a1000001-0000-0000-0000-000000000001"
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q25",
+   "category": "paraphrase",
+   "query": "cheerfulness you arrive at instead of assuming",
+   "returned": [
+    "?ǚ?7??????",
+    "knw-08559f5c-2306-4220-a146-398c74f1643c",
+    "015644f5-8194-4af0-800d-dd4a0cd71396",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "knw-d357b6bb-ad8a-4791-b516-426aea45fa5b",
+    "7?e?7???\f3?",
+    "ctx-bb74",
+    "??S?7???",
+    "knw-f671966c-3387-4848-abca-b5deec122e00"
+   ],
+   "n_returned": 10,
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+   "mrr@10": 0.0
+  },
+  {
+   "id": "q26",
+   "category": "paraphrase",
+   "query": "a childhood offering no solid foundation to inherit",
+   "returned": [
+    "? ?}&?#??X\b",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "kn-f230b362-b201-4402-9833-4160c89ab3d4",
+    "? ?}&?#??X\b",
+    "kn-6061318f-046b-4935-907d-8eafdce14930",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "? ?}&?#??X\b",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "kn-5b606390-a52d-4ca2-8e0e-eba141d13440",
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3"
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+   "precision@5": 0.2,
+   "mrr@10": 0.2
+  },
+  {
+   "id": "q27",
+   "category": "associative",
+   "query": "Grandma Lucas stroke February 2006 goodbye window",
+   "returned": [
+    "? ?}&?#??X\b",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "? ?}&?#??X\b",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "kn-0bb4f021-56de-4947-a35b-a37209e7ba21",
+    "? ?}&?#??X\b",
+    "kn-e0423482-cfa5-4796-8689-8495c93b66bc",
+    "? ?}&?#??X\b",
+    "kn-78db5396-3dbc-4481-bfc7-e4e1422feb1c"
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+   "mrr@10": 0.3333333333333333
+  },
+  {
+   "id": "q28",
+   "category": "associative",
+   "query": "Marines hernia sepsis medical ward",
+   "returned": [
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "54608b69-78b6-4239-b60f-b8206cfecacc",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "bl-33ecccc2-e37f-43db-91b3-c2a86f08aaac",
+    "015644f5-8194-4af0-800d-dd4a0cd71396",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "art-e0bdf5d8-d163-491f-b649-453fee8b721d",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71"
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+   "mrr@10": 0.25
+  },
+  {
+   "id": "q29",
+   "category": "associative",
+   "query": "Sarah Bishop Dyer trailer performance",
+   "returned": [
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "? ?}&?#??X\b",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "? ?}&?#??X\b",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71",
+    "? ?}&?#??X\b",
+    "015644f5-8194-4af0-800d-dd4a0cd71396",
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "kn-5de5a9ac-fd15-45ab-bf18-77566781cf40"
+   ],
+   "n_returned": 10,
+   "latency_ms": 1232.9,
+   "error": null,
+   "hit@5": 1.0,
+   "recall@5": 0.09090909090909091,
+   "recall@10": 0.36363636363636365,
+   "precision@5": 0.2,
+   "mrr@10": 0.25
+  },
+  {
+   "id": "q30",
+   "category": "associative",
+   "query": "Swarm Architecture containment lateral worker",
+   "returned": [
+    "art-ee615cdb-e599-423d-9a4d-977859390ed3",
+    "bl-9bde67c1-f0ba-4c3a-8fe5-de0deee0ce43",
+    "ctx-e5427d7d",
+    "kn-b36902cc-0b05-44ba-9aa7-800e5dea9ca9",
+    "bl-2515d870-e35e-443b-ba20-5150bbc73fed",
+    "8cbb60c5-4999-4ec1-8682-2592aedc4249",
+    "kn-6f248a50-355b-47bb-aec8-e0e646a9b077",
+    "ctx-bb74",
+    "bl-0fac287f-f4c0-4f15-bc4d-ff7f8a7af3ae",
+    "bl-8c2d5f51-3ccd-4c2e-848a-eb60d90a3b98"
+   ],
+   "n_returned": 10,
+   "latency_ms": 1227.1,
+   "error": null,
+   "hit@5": 0.0,
+   "recall@5": 0.0,
+   "recall@10": 0.0,
+   "precision@5": 0.0,
+   "mrr@10": 0.0
+  },
+  {
+   "id": "q31",
+   "category": "associative",
+   "query": "hope won inside the narrative preface",
+   "returned": [
+    "kn-e0423482-cfa5-4796-8689-8495c93b66bc",
+    "knw-e94982a2-358d-4f2f-af31-8ee0fcec07c6",
+    "bl-2b00aeb0-c0fa-4a9f-8f30-4207e98b3d52",
+    "kn-58874a74-b96f-4883-9e08-45707f4bd3ee",
+    "kn-5b606390-a52d-4ca2-8e0e-eba141d13440",
+    "knw-4aebd815-4eaf-49d7-954b-03595f3d48be",
+    "knw-723551f5-1950-42a3-8b89-b6a06913cef0",
+    "knw-9e74ee95-ba7d-49b1-9262-977eae9729d1",
+    "knw-d357b6bb-ad8a-4791-b516-426aea45fa5b"
+   ],
+   "n_returned": 9,
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+   "hit@5": 1.0,
+   "recall@5": 0.09090909090909091,
+   "recall@10": 0.09090909090909091,
+   "precision@5": 0.2,
+   "mrr@10": 0.25
+  },
+  {
+   "id": "q32",
+   "category": "associative",
+   "query": "man of the house six years old expectation",
+   "returned": [
+    "? ?}&?#??X\b",
+    "4f698ae6-c40e-464e-9798-50350991a188",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "kn-6061318f-046b-4935-907d-8eafdce14930",
+    "? ?}&?#??X\b",
+    "kn-db9f141b-dbe3-4037-92e0-4bb9be0e5e6e",
+    "? ?}&?#??X\b",
+    "kn-0bb4f021-56de-4947-a35b-a37209e7ba21",
+    "? ?}&?#??X\b",
+    "kn-a99cefe3-5e83-4050-98d8-6c69f57c7c71"
+   ],
+   "n_returned": 10,
+   "latency_ms": 1464.9,
+   "error": null,
+   "hit@5": 0.0,
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+   "recall@10": 0.2727272727272727,
+   "precision@5": 0.0,
+   "mrr@10": 0.16666666666666666
+  },
+  {
+   "id": "q33",
+   "category": "nonsense",
+   "query": "zqxjvw plimforth grebulon",
+   "returned": [],
+   "n_returned": 0,
+   "latency_ms": 756.0,
+   "error": null,
+   "clean": true,
+   "false_positives": 0
+  },
+  {
+   "id": "q34",
+   "category": "nonsense",
+   "query": "flarnbistle quommetry",
+   "returned": [],
+   "n_returned": 0,
+   "latency_ms": 517.1,
+   "error": null,
+   "clean": true,
+   "false_positives": 0
+  },
+  {
+   "id": "q35",
+   "category": "nonsense",
+   "query": "xxqzzt vurblenacht throom",
+   "returned": [
+    "art-4a99aa1a-489b-4b43-958b-25217adb1aad",
+    "?V?",
+    "knw-6b48dce2-f21c-452a-9db5-4e6aa61c87ca",
+    "knw-920c891f-bb8c-48c4-9afc-018ef12dcdc4",
+    "?m?\\}Q??6??",
+    "8cbb60c5-4999-4ec1-8682-2592aedc4249",
+    "art-79042b8b-6192-440f-90b0-60708f7e6325",
+    "?m?\\}Q??6??",
+    "knw-723551f5-1950-42a3-8b89-b6a06913cef0",
+    "art-ddfcd045-2c3b-4a1e-9966-fec5ce44e1dd"
+   ],
+   "n_returned": 10,
+   "latency_ms": 755.8,
+   "error": null,
+   "clean": false,
+   "false_positives": 10
+  },
+  {
+   "id": "q36",
+   "category": "superseded",
+   "query": "is the self-improvement architecture called DARMA or DHARMA",
+   "returned": [
+    "7?e?7???\f3?",
+    "mem-80d7416b-20e9-48a0-b176-b215527e2f56",
+    "? ?}&?#??X\b",
+    "mem-f3b37427-b7d1-4f7e-b32c-0241a20ce8da",
+    "? ?}&?#??X\b",
+    "kn-b7e98d63-8b83-4911-b4d0-990602a7f575",
+    "?of?7???",
+    "knw-e047bb42-dc5b-4383-9e88-e508dc03abe3",
+    "? ?}&?#??X\b",
+    "bl-5b17bd3b-0c41-46cb-a710-6fa4429692ff"
+   ],
+   "n_returned": 10,
+   "latency_ms": 1329.3,
+   "error": null,
+   "hit@5": 1.0,
+   "recall@5": 1.0,
+   "recall@10": 1.0,
+   "precision@5": 0.2,
+   "mrr@10": 0.5,
+   "outranks": true,
+   "rank_correct": 2,
+   "rank_stale": 10
+  },
+  {
+   "id": "q37",
+   "category": "superseded",
+   "query": "how many provisional patents does Will actually have",
+   "returned": [
+    "? ?}&?#??X\b",
+    "12082f7e-e320-438b-bd65-083d8259748f",
+    "6de314bf-5c4c-4cfc-871f-fa2e422d45e6",
+    "? ?}&?#??X\b",
+    "527ecb25-2587-47eb-8269-73be2431abd4",
+    "kn-eb1b9e18-3dc6-4b9b-9cc6-86e0ae6b6be8",
+    "? ?}&?#??X\b",
+    "3cf706a1-3825-45d8-b0a9-06cae6cdf5b8",
+    "kn-5de5a9ac-fd15-45ab-bf18-77566781cf40",
+    "? ?}&?#??X\b"
+   ],
+   "n_returned": 10,
+   "latency_ms": 1692.6,
+   "error": null,
+   "hit@5": 0.0,
+   "recall@5": 0.0,
+   "recall@10": 1.0,
+   "precision@5": 0.0,
+   "mrr@10": 0.125,
+   "outranks": true,
+   "rank_correct": 8,
+   "rank_stale": null
+  },
+  {
+   "id": "q38",
+   "category": "superseded",
+   "query": "is MCP still the live integration layer",
+   "returned": [
+    "kn-5584ef9c-7f9d-4d7c-a10a-4ee6bc5cf356",
+    "bl-7328cbe3-0200-43c2-88e7-0a164e15fca4",
+    "bl-c8c19362-430b-4817-9cf4-9e85e0099c64",
+    "7?e?7???\f3?",
+    "mem-101e81b4-8097-4749-8d8d-7bb66de34517",
+    "ctx-3a55",
+    "? ?}&?#??X\b",
+    "4509ed62-9fb2-48b8-9038-ac569fca9604",
+    "bl-4f7b651b-6b33-449c-8a3b-cfce12ce984b",
+    "%???2??jH??"
+   ],
+   "n_returned": 10,
+   "latency_ms": 1040.0,
+   "error": null,
+   "hit@5": 0.0,
+   "recall@5": 0.0,
+   "recall@10": 0.0,
+   "precision@5": 0.0,
+   "mrr@10": 0.0,
+   "outranks": false,
+   "rank_correct": null,
+   "rank_stale": 5
+  }
+ ]
+}