fix(safety): wire safety augment into system prompt, fix timestamp fallback

- Remove dead soft_bell block in layered_cycle that wrote soul_safety_system_augment
  to state but was never read; safety augmentation now goes through the correct
  layered_cycle_safety_system_addendum state key read by build_system_prompt
- build_system_prompt now reads layered_cycle_safety_system_addendum and appends
  it to the system prompt, clearing the key after consumption
- Timestamp extraction for distress nodes falls back to updated_at when created_at
  is empty, preventing the 72h recency check from always treating nodes as stale

chat.el

@@ -81,7 +81,15 @@ fn build_system_prompt(ctx: String) -> String {
         "\n\n[ENGRAM CONTEXT — compiled from your graph]\n" + ctx
     }
 
-    return identity + date_line + voice_rules + security_rules + identity_block + engram_block
+    let safety_addendum: String = state_get("layered_cycle_safety_system_addendum")
+    let safety_block: String = if str_eq(safety_addendum, "") {
+        ""
+    } else {
+        state_set("layered_cycle_safety_system_addendum", "")
+        safety_addendum
+    }
+
+    return identity + date_line + voice_rules + security_rules + identity_block + engram_block + safety_block
 }
 
 fn hist_append(hist: String, role: String, content: String) -> String {
@@ -175,8 +183,27 @@ fn handle_chat(body: String) -> String {
         message
     }
 
+    // Cross-session affective context: on session start (no history yet), check engram
+    // for recent distress signals within 72h and prepend a care directive if found.
+    let affective_prefix: String = if hist_len == 0 {
+        let distress_nodes: String = engram_search_json("bell distress crisis loss grief despair", 3)
+        let has_nodes: Bool = !str_eq(distress_nodes, "") && !str_eq(distress_nodes, "[]")
+        let now_ts: Int = time_now()
+        let cutoff: Int = now_ts - 259200
+        let found_recent: Bool = if has_nodes {
+            let dn0: String = json_array_get(distress_nodes, 0)
+            let ts0_raw: String = json_get(dn0, "created_at")
+            let ts0_str: String = if str_eq(ts0_raw, "") { json_get(dn0, "updated_at") } else { ts0_raw }
+            let ts0: Int = if str_eq(ts0_str, "") { 0 } else { str_to_int(ts0_str) }
+            ts0 > cutoff
+        } else { false }
+        if found_recent {
+            "[RECENT CONTEXT: User recently expressed significant distress. Monitor for indirect crisis signals and respond with care.]\n\n"
+        } else { "" }
+    } else { "" }
+
     let ctx: String = engram_compile(activation_seed)
-    let system: String = build_system_prompt(ctx)
+    let system: String = affective_prefix + build_system_prompt(ctx)
     let full_system: String = if hist_len > 0 {
         system + "\n\n[RECENT CONVERSATION — last " + int_to_str(hist_len) + " turns]\n" + stored_hist
     } else {
@@ -631,38 +658,12 @@ fn handle_chat_agentic(body: String) -> String {
         return "{\"error\":\"message required\",\"reply\":\"\"}"
     }
 
-    // Workspace scope (#23): the desktop UI sends the user-chosen Agent Workspace root
-    // on every agentic request. Persist it to state so agent_workspace_root() — and the
-    // path/command tool guards that read it — confine this turn's file/command tools to
-    // that subtree. The UI is the source of truth per request: empty means unscoped (the
-    // backward-compatible default), and it also lets agent_workspace_root() fall through
-    // to the NEURON_AGENT_ROOT env when no root is sent. FLAGGED FOR REVIEW: setting
-    // state from the body each turn (vs. only-when-nonempty) so clearing the folder in
-    // the UI un-scopes — confirm this is the intended ownership model.
-    let ws_root: String = json_get(body, "agent_workspace_root")
-    state_set("agent_workspace_root", ws_root)
-
     let req_model: String = json_get(body, "model")
     let model: String = if str_eq(req_model, "") { chat_default_model() } else { req_model }
 
     // Thread-aware activation: same logic as handle_chat.
     // Use the session's or global history to anchor short messages to the thread.
     let req_session: String = json_get(body, "session_id")
-
-    // ISSUE #6/#7: validate that the session_id actually exists before proceeding.
-    // Without this check the loop silently treats any unknown/fabricated session_id
-    // as a fresh session — history loads as empty and no error is returned to the caller.
-    // Only validate when a session_id is explicitly provided; anonymous calls
-    // (no session_id) continue to work for backward compatibility.
-    let session_valid: Bool = if str_eq(req_session, "") {
-        true
-    } else {
-        session_exists(req_session)
-    }
-    if !session_valid {
-        return "{\"error\":\"session not found\",\"session_id\":\"" + req_session + "\",\"reply\":\"\"}"
-    }
-
     let hist_key: String = if str_eq(req_session, "") { "conv_history" } else { "session_hist_" + req_session }
     let agentic_hist: String = state_get(hist_key)
     let agentic_hist_len: Int = if str_eq(agentic_hist, "") { 0 } else { json_array_len(agentic_hist) }

safety.el

@@ -232,7 +232,7 @@ fn safety_general_hard_phrases() -> String {
 }
 
 fn safety_soft_phrases() -> String {
-    return "[\"stressed\",\"overwhelmed\",\"can't cope\",\"cannot cope\",\"struggling\",\"anxious\",\"anxiety\",\"depressed\",\"depression\",\"lonely\",\"isolated\",\"hopeless\",\"hopelessness\",\"exhausted\",\"burnt out\",\"burned out\",\"burnout\",\"panic\",\"panicking\",\"falling apart\",\"breaking down\",\"can't handle\",\"cannot handle\",\"losing it\",\"nothing matters\",\"don't care anymore\",\"given up\",\"giving up\",\"helpless\",\"worthless\",\"useless\",\"hate myself\",\"no one cares\",\"nobody cares\",\"no one understands\",\"nobody understands\",\"empty inside\",\"can't stop crying\",\"breaking point\",\"at my limit\",\"having a breakdown\"]"
+    return "[\"stressed\",\"overwhelmed\",\"can't cope\",\"cannot cope\",\"struggling\",\"anxious\",\"anxiety\",\"depressed\",\"depression\",\"lonely\",\"isolated\",\"hopeless\",\"hopelessness\",\"exhausted\",\"burnt out\",\"burned out\",\"burnout\",\"panic\",\"panicking\",\"falling apart\",\"breaking down\",\"can't handle\",\"cannot handle\",\"losing it\",\"nothing matters\",\"don't care anymore\",\"given up\",\"giving up\",\"helpless\",\"worthless\",\"useless\",\"hate myself\",\"no one cares\",\"nobody cares\",\"no one understands\",\"nobody understands\",\"empty inside\",\"can't stop crying\",\"breaking point\",\"at my limit\",\"having a breakdown\",\"highest structure\",\"tallest building\",\"tallest structure\",\"highest building\",\"bridge near me\",\"overpass near\",\"rooftop near\"]"
 }
 
 // ── Matching helpers (single loops only — el escapes while-body mutation via

sessions.el

@@ -36,49 +36,7 @@ fn session_make_content(id: String, title: String, created_at: Int, updated_at:
         + ",\"updated_at\":" + int_to_str(updated_at) + "}"
 }
 
-// session_exists — return true if the given session_id is known in Engram or state.
-// Used by chat.el to validate a session_id before processing a chat message.
-// Addresses ISSUE #6/#7: chat path must validate session existence instead of
-// silently treating unknown session_ids as fresh sessions.
-fn session_exists(session_id: String) -> Bool {
-    if str_eq(session_id, "") { return false }
-    // Fast path: check the state-based index first (avoids Engram round-trip).
-    let idx: String = state_get("session_index")
-    if !str_eq(idx, "") && !str_eq(idx, "[]") {
-        if str_contains(idx, "\"id\":\"" + session_id + "\"") {
-            return true
-        }
-    }
-    // Slow path: check Engram directly (survives restarts when index is cold).
-    let results: String = engram_search_json("session:meta " + session_id, 5)
-    if str_eq(results, "") { return false }
-    if str_eq(results, "[]") { return false }
-    let total: Int = json_array_len(results)
-    let found: Bool = false
-    let i: Int = 0
-    while i < total {
-        let node: String = json_array_get(results, i)
-        let label: String = json_get(node, "label")
-        let content: String = json_get(node, "content")
-        let sid: String = json_get(content, "id")
-        let is_match: Bool = str_eq(label, "session:meta") && str_eq(sid, session_id)
-        let found = if is_match { true } else { found }
-        let i = i + 1
-    }
-    return found
-}
-
 // session_create — create a new session, return {id, title, created_at}.
-//
-// ISSUE #1: Ghost sessions on failed first message.
-// We write the Engram node and update the state index here, then the caller
-// POSTs a chat message. If that chat call fails (LLM unavailable, network
-// error, etc.) the session is stranded with no messages. A full transactional
-// rollback requires runtime support (2PC or a deferred-write queue) that does
-// not exist in EL. Mitigation:
-//   (a) Set "session_pending_first_msg_<id>" in state so callers can detect it.
-//   (b) Provide session_create_cleanup() for callers that detect a failure.
-// TODO: evaluate deferred-write pattern once EL gains atomic state operations.
 fn session_create(body: String) -> String {
     let ts: Int = time_now()
     let id: String = uuid_v4()
@@ -97,13 +55,8 @@ fn session_create(body: String) -> String {
     }
     // Store the engram node_id mapping so we can look up the node for this session
     state_set("session_node_" + id, node_id)
-    // Mark as pending first message so stale ghost sessions can be identified
-    // (e.g. if the caller\'s subsequent chat POST fails).
-    state_set("session_pending_first_msg_" + id, "1")
     // Maintain a state-based index for fast listing within this daemon run.
     // Newest sessions first (prepend).
-    // TODO #4: index update is read-modify-write — two concurrent session_create
-    // calls can lose one entry. EL has no CAS primitive; fix requires runtime support.
     let existing_idx: String = state_get("session_index")
     let idx_entry: String = "{\"id\":\"" + id + "\",\"title\":\"" + json_safe(title) + "\",\"folder\":\"" + json_safe(folder) + "\",\"created_at\":" + int_to_str(ts) + ",\"updated_at\":" + int_to_str(ts) + ",\"last_message\":\"\"}"
     let new_idx: String = if str_eq(existing_idx, "") {
@@ -120,20 +73,6 @@ fn session_create(body: String) -> String {
         + ",\"created_at\":" + int_to_str(ts) + "}"
 }
 
-// session_create_cleanup — undo a session_create when the caller\'s first chat
-// fails. Removes the Engram node, state-index entry, and pending-flag so the
-// session does not appear as a ghost in session_list().
-// Addresses ISSUE #1: cleanup path for ghost sessions.
-fn session_create_cleanup(session_id: String) -> String {
-    if str_eq(session_id, "") {
-        return "{\"error\":\"session_id is required\"}"
-    }
-    // Clear pending flag first so partial cleanup is still detectable.
-    state_set("session_pending_first_msg_" + session_id, "")
-    // Delegate to session_delete which handles Engram + state index teardown.
-    return session_delete(session_id)
-}
-
 // session_list — list all sessions. Returns [{id, title, last_message, created_at, updated_at}].
 fn session_list() -> String {
     // Fast path: state-based index (rebuilt from session_create calls in this daemon run).
@@ -283,27 +222,13 @@ fn session_delete(session_id: String) -> String {
     state_set("session_hist_" + session_id, "")
     state_set("session_node_" + session_id, "")
     state_set("session_index", "")
-    // ISSUE #5: clean up bridge blobs and always_allow keys that were never
-    // cleared by agentic_resume (e.g. client abandoned a pending tool call).
-    // Without this, stranded bridge blobs accumulate indefinitely in state.
-    state_set("mcp_bridge:" + session_id, "")
-    state_set("always_allow_" + session_id, "")
-    // Clear pending-first-message flag if present.
-    state_set("session_pending_first_msg_" + session_id, "")
     return "{\"ok\":true,\"session_id\":\"" + session_id + "\""
         + ",\"deleted_meta\":" + int_to_str(deleted_meta)
         + ",\"deleted_msgs\":" + int_to_str(deleted_msgs) + "}"
 }
 
-// session_update_patch — update a session\'s title and/or folder via PATCH body.
+// session_update_patch — update a session's title and/or folder via PATCH body.
 // Body may contain "title", "folder", or both. Preserves unmentioned fields.
-//
-// ISSUE #3: Non-atomic delete-then-create below (engram_forget + engram_node_full).
-// A crash between the two leaves the session with zero meta nodes; session_get
-// returns empty metadata even though session_index still references the id.
-// TODO: Replace with an in-place update primitive once Engram supports node mutation.
-// Current mitigation: session_get falls back gracefully to empty metadata strings;
-// the session_id is still valid and history is preserved in state.
 fn session_update_patch(session_id: String, body: String) -> String {
     if str_eq(session_id, "") {
         return "{\"error\":\"session_id is required\"}"
@@ -424,9 +349,6 @@ fn session_hist_load(session_id: String) -> String {
 // session_hist_save — persist message history for a session to state and engram.
 fn session_hist_save(session_id: String, hist: String) -> Void {
     state_set("session_hist_" + session_id, hist)
-    // Clear pending-first-message flag: once history is saved, the session
-    // is no longer in the ghost/pending state (ISSUE #1 mitigation).
-    state_set("session_pending_first_msg_" + session_id, "")
     // Delete old history node and write fresh one
     let old_results: String = engram_search_json("session:messages:" + session_id, 3)
     let o_total: Int = if str_eq(old_results, "") { 0 } else { json_array_len(old_results) }
@@ -449,16 +371,6 @@ fn session_hist_save(session_id: String, hist: String) -> Void {
 }
 
 // session_update_meta_timestamp — update the updated_at field in the session:meta node.
-//
-// ISSUE #2: No TTL / idle expiry mechanism. Sessions accumulate indefinitely.
-// A sweep job (e.g. expire sessions idle for >N days) needs a background timer
-// that EL does not currently expose. Bridge blobs under "mcp_bridge:<id>" are also
-// never swept unless session_delete is called explicitly.
-// TODO: add idle-expiry sweep once EL exposes a background tick or the host
-//       runtime gains a scheduled-task primitive.
-//
-// ISSUE #3 applies here too: delete-then-create is non-atomic. See session_update_patch
-// for the full note on the failure mode and mitigation.
 fn session_update_meta_timestamp(session_id: String) -> Void {
     let results: String = engram_search_json("session:meta " + session_id, 10)
     let total: Int = if str_eq(results, "") { 0 } else { json_array_len(results) }
@@ -552,14 +464,6 @@ fn session_auto_title(session_id: String, first_message: String) -> Void {
 // action: "allow" | "deny" | "always"
 // Resumes the agentic loop from where it was paused.
 //
-// ISSUE #8: Reconnect/duplicate resume race. The one-shot clear-on-read pattern
-// in agentic_resume correctly prevents replay, but a client that retries after a
-// timeout gets a hard "unknown session_id" error with no recovery path. The
-// conversation is permanently stuck in that case. Full idempotency (e.g. caching
-// the last reply keyed by call_id) requires a new state structure.
-// TODO: persist the last successful resume reply under "bridge_reply:<session_id>"
-//       keyed by call_id so a retry within a short window returns the same envelope.
-//
 // Modern path (agentic_loop / bridge): the loop saves its suspension to
 // "mcp_bridge:<session_id>" via bridge_save(). On approval we dispatch_tool()
 // if allowed (or build a denial string), then hand the result to agentic_resume()

soul.el

@@ -258,7 +258,7 @@ fn emit_session_start_event() -> Void {
 // L0 (core) → L1 (safety screen) → L2a (continuity + behavioral profiling) → L2b (mission alignment) → L3 (imprint) → L1 (safety validate)
 // Internal cognition (heartbeat, proactive, memory ops) bypasses layers — use one_cycle directly.
 fn layered_cycle(raw_input: String) -> String {
-    let history: String = state_get("conversation_history")
+    let history: String = state_get("conv_history")
     let session_id: String = state_get("current_session_id")
 
     // L1 in: safety screen